Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 8.6e-82 307.0 160 100.0
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 3.9e-18 95.5 96 51.0
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 2.1e-16 89.7 62 75.8
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 1.8e-15 86.7 80 51.2
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.4e-15 86.3 100 49.0
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 4.5e-14 82.0 94 47.9
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 1.7e-13 80.1 109 43.1
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 2.9e-13 79.3 100 46.0
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 2.9e-13 79.3 122 43.4
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 3.8e-13 79.0 87 49.4
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 3.8e-13 79.0 87 49.4
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 3.8e-13 79.0 96 45.8
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 3.8e-13 79.0 87 49.4
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 3.8e-13 79.0 96 45.8
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 3.8e-13 79.0 87 48.3
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 3.8e-13 79.0 87 49.4
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 4.9e-13 78.6 91 49.5
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.9e-13 78.6 104 44.2
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 6.5e-13 78.2 87 49.4
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 6.5e-13 78.2 87 49.4
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 6.5e-13 78.2 87 49.4
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 8.4e-13 77.8 92 45.7
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 8.4e-13 77.8 84 50.0
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 8.4e-13 77.8 92 47.8
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 8.4e-13 77.8 104 44.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 8.4e-13 77.8 104 44.2
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 1.4e-12 77.0 104 42.3
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.9e-12 76.6 84 50.0
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 4.2e-12 75.5 70 54.3
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 4.2e-12 75.5 92 45.7
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 4.2e-12 75.5 112 44.6
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 5.5e-12 75.1 76 52.6
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 5.5e-12 75.1 91 47.3
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.2e-11 73.9 76 56.6
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 2.1e-11 73.2 85 49.4
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 2.1e-11 73.2 77 54.5
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 2.1e-11 73.2 117 41.0
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 2.7e-11 72.8 63 60.3
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.7e-11 72.8 63 60.3
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 3.5e-11 72.4 91 47.3
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 3.5e-11 72.4 70 52.9
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 3.5e-11 72.4 72 54.2
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 3.5e-11 72.4 69 52.2
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.6e-11 72.0 76 50.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 4.6e-11 72.0 76 50.0
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 4.6e-11 72.0 85 45.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.6e-11 72.0 79 49.4
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 6.1e-11 71.6 87 48.3
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 6.1e-11 71.6 89 46.1
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 6.1e-11 71.6 63 58.7
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 6.1e-11 71.6 104 45.2
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 7.9e-11 71.2 75 54.7
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 7.9e-11 71.2 88 47.7
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 7.9e-11 71.2 89 46.1
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 7.9e-11 71.2 89 46.1
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 7.9e-11 71.2 63 58.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 7.9e-11 71.2 136 40.4
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 7.9e-11 71.2 73 52.1
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 7.9e-11 71.2 76 53.9
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 7.9e-11 71.2 76 53.9
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 7.9e-11 71.2 60 61.7
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 1.0e-10 70.9 84 47.6
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 1.0e-10 70.9 59 59.3
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.0e-10 70.9 82 50.0
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.3e-10 70.5 77 53.2
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 1.3e-10 70.5 77 53.2
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 1.3e-10 70.5 80 50.0
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 1.3e-10 70.5 129 38.8
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 1.8e-10 70.1 95 44.2
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.3e-10 69.7 77 53.2
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 2.3e-10 69.7 74 51.4
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 2.3e-10 69.7 63 58.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 2.3e-10 69.7 94 42.6
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 2.3e-10 69.7 132 40.2
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 3.0e-10 69.3 54 61.1
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 3.9e-10 68.9 76 48.7
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 3.9e-10 68.9 105 41.9
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 3.9e-10 68.9 72 50.0
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 5.1e-10 68.6 75 52.0
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 5.1e-10 68.6 76 52.6
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 5.1e-10 68.6 91 50.5
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 6.7e-10 68.2 79 50.6
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 6.7e-10 68.2 134 38.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 8.7e-10 67.8 117 43.6
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 8.7e-10 67.8 72 51.4
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.1e-09 67.4 104 41.3
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 1.1e-09 67.4 116 38.8
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.1e-09 67.4 77 51.9
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 1.5e-09 67.0 52 59.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.5e-09 67.0 80 48.8
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.5e-09 67.0 90 43.3
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.5e-09 67.0 155 34.2
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.9e-09 66.6 50 64.0
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 3.3e-09 65.9 77 49.4
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 4.3e-09 65.5 50 64.0
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.7e-09 65.1 94 44.7
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 9.7e-09 64.3 50 58.0
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 8.2e-08 61.2 58 55.2
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 2.4e-07 59.7 56 55.4
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 3.1e-07 59.3 68 50.0
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 3.4e-06 55.8 149 32.2
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 5.9e-06 55.1 58 50.0


User provided reference genes

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