Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.5e-118 427.6 203 100.0
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 5.5e-118 427.6 203 100.0
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.0e-59 233.0 206 64.1
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 3.4e-59 232.3 206 64.1
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-58 228.8 203 63.1
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-58 228.8 203 63.1
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.4e-58 228.0 206 62.1
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 8.4e-58 227.6 205 63.4
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.1e-57 227.3 205 62.0
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 1.9e-57 226.5 202 63.4
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 1.9e-57 226.5 204 63.7
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.2e-56 223.8 205 62.4
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 4.6e-56 221.9 202 61.9
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 6.0e-56 221.5 206 62.1
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 6.0e-56 221.5 199 62.3
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 2.3e-55 219.5 202 61.9
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 3.0e-55 219.2 202 61.4
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 3.9e-55 218.8 205 61.5
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 3.9e-55 218.8 203 62.1
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 3.9e-55 218.8 203 62.1
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.9e-55 218.8 203 62.1
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.9e-55 218.8 203 62.1
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-55 218.8 205 61.5
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-55 218.8 205 61.5
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 3.9e-55 218.8 205 61.5
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 5.1e-55 218.4 206 61.2
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 6.6e-55 218.0 206 61.2
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 6.6e-55 218.0 206 61.2
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.5e-54 216.9 205 60.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.9e-54 216.5 199 61.8
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 3.3e-54 215.7 205 58.0
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 3.3e-54 215.7 205 58.0
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 5.6e-54 214.9 199 61.8
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-53 213.4 205 60.0
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-53 213.4 205 60.0
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-53 213.4 205 60.0
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 6.2e-53 211.5 202 60.4
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 8.1e-53 211.1 203 60.6
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 2.4e-52 209.5 198 59.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 4.0e-52 208.8 192 62.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.0e-52 207.6 200 59.5
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 1.2e-51 207.2 205 58.5
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 3.4e-51 205.7 178 64.6
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.4e-50 201.4 202 57.9
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 5.4e-49 198.4 183 62.3
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 4.6e-48 195.3 203 55.7
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 1.1e-46 190.7 179 60.9
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 2.5e-46 189.5 205 55.6
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 1.3e-45 187.2 185 58.9
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 8.1e-45 184.5 204 54.4
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 1.1e-44 184.1 160 63.8
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.2e-42 176.4 162 61.1
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 3.8e-42 175.6 161 62.1
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.8e-42 175.6 163 60.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.2e-41 172.6 160 60.0
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 5.5e-41 171.8 163 59.5
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 9.3e-41 171.0 168 57.7
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 1.6e-40 170.2 166 57.8
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 2.7e-40 169.5 182 56.0
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 3.0e-39 166.0 203 48.8
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.4e-36 156.4 186 49.5
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 6.5e-34 148.3 142 56.3
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 2.1e-32 143.3 138 58.7
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 1.0e-31 141.0 142 57.0
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-30 137.5 150 54.7
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 1.4e-28 130.6 143 57.3
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-27 127.5 125 56.0
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-27 126.7 154 52.6
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.4e-27 125.9 91 69.2
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 4.5e-27 125.6 126 61.1
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 1.4e-25 120.6 118 58.5
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 5.5e-25 118.6 167 49.1
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 1.8e-20 103.6 58 81.0
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 2.9e-18 96.3 72 68.1
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 1.1e-09 67.8 66 56.1
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 9.4e-09 64.7 53 56.6
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-08 64.3 75 44.0
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 4.7e-08 62.4 72 50.0
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 5.1e-07 58.9 58 50.0
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 5.1e-07 58.9 125 36.0
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 2.0e-06 57.0 42 66.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 2.6e-06 56.6 37 64.9


User provided reference genes

Program Settings