Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.3e-178 628.2 311 100.0
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 3.3e-178 628.2 311 100.0
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 8.4e-134 480.7 274 88.0
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 2.4e-133 479.2 274 87.6
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.2e-133 478.4 274 87.6
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 5.4e-133 478.0 274 87.2
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.2e-132 476.9 274 87.2
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 6.0e-132 474.6 274 86.9
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 9.6e-130 467.2 274 86.5
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 9.0e-128 460.7 274 85.4
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 85.0
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 2.6e-127 459.1 274 84.7
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 2.2e-126 456.1 274 84.7
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 3.8e-126 455.3 274 84.7
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.4e-126 454.1 274 84.3
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-124 449.1 274 83.9
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-124 449.1 274 83.9
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 2.7e-124 449.1 274 83.9
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 6.0e-124 448.0 274 83.6
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.3e-123 446.8 274 83.2
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 1.8e-123 446.4 274 82.8
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 2.3e-123 446.0 274 83.2
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 8.7e-123 444.1 274 83.2
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 8.7e-123 444.1 274 83.2
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 8.7e-123 444.1 274 83.2
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-122 443.7 267 84.3
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 6.2e-121 438.0 274 82.5
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 1.4e-120 436.8 274 81.4
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 2.0e-119 433.0 274 81.4
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.6e-119 432.6 274 81.0
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 8.7e-115 417.5 245 84.9
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.3e-113 413.7 245 84.9
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 4.8e-113 411.8 246 84.6
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 5.3e-112 408.3 274 78.1
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 7.7e-111 404.4 274 78.5
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 3.8e-110 402.1 245 83.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.2e-109 398.7 245 82.9
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 3.6e-108 395.6 274 76.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 1.8e-107 393.3 274 76.6
CAN.G1167.11 Capsicum annuum HOM05D004537 ORTHO05D005492 2.8e-105 386.0 274 75.2
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 1.1e-104 384.0 274 74.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 5.0e-102 375.2 236 80.9
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.9e-101 373.2 274 73.7
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 7.9e-100 367.9 274 73.0
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 1.4e-99 367.1 274 72.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.9e-99 365.5 265 74.3
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.5e-98 363.6 264 74.2
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 3.7e-97 359.0 255 73.7
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-96 357.5 275 70.5
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.1e-93 347.4 274 69.0
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.4e-91 340.5 239 74.1
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.7e-90 335.1 274 66.1
BraSC159t45726Z Brassica rapa HOM05D004537 ORTHO05D005492 1.1e-88 330.9 182 91.8
BolSC28t60311H Brassica oleracea HOM05D004537 ORTHO05D005492 4.1e-88 328.9 181 91.7
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 2.9e-78 296.2 180 82.2
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-77 294.3 274 60.6
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-74 282.3 180 80.0
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-74 282.3 180 80.0
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 4.4e-74 282.3 180 80.0
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 2.7e-71 273.1 180 77.2
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.3e-70 270.8 274 57.7
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-70 269.2 203 70.4
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 5.4e-64 248.8 251 56.6
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 8.6e-62 241.5 164 73.2
PGSC0003DMG400002971 Solanum tuberosum HOM05D004537 ORTHO05D005492 2.2e-57 226.9 131 90.1
COL.COLO4_04173 Corchorus olitorius HOM05D004537 ORTHO05D005492 4.9e-57 225.7 124 90.3
TAR022G0004 Trochodendron aralioides HOM05D004537 ORTHO05D005492 1.1e-53 214.5 140 73.6
MELO3C027747.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-52 211.1 124 87.9
Nitab4.5_0000866g0210 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.6e-52 210.7 146 77.4
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 6.2e-52 208.8 247 51.0
Haze_27101 Corylus avellana HOM05D004537 ORTHO05D005492 4.0e-51 206.1 269 42.0
MELO3C021523.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.2e-50 204.5 152 73.0
SHI20135 Sapria himalayana HOM05D004537 ORTHO05D005492 2.9e-49 199.9 180 61.7
Haze_27145 Corylus avellana HOM05D004537 ORTHO05D005492 7.1e-48 195.3 204 53.4
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 3.3e-45 186.4 222 52.7
SHI27475 Sapria himalayana HOM05D004537 ORTHO05D005492 4.4e-42 176.0 180 57.8
BraSC48t46324Z Brassica rapa HOM05D004537 ORTHO05D005492 1.2e-39 167.9 226 50.4
HanXRQChr05g0159721 Helianthus annuus HOM05D004537 ORTHO05D005492 7.8e-39 165.2 109 73.4
Nitab4.5_0000592g0100 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.6e-36 157.5 213 47.9
Solyc11g063610.3 Solanum lycopersicum HOM05D004537 ORTHO05D005492 3.6e-36 156.4 93 84.9
SMO053G0009 Selaginella moellendorffii HOM05D004537 ORTHO05D005492 2.4e-35 153.7 220 48.2
Migut.E01634 Erythranthe guttata HOM05D004537 ORTHO05D005492 3.1e-35 153.3 86 89.5
Migut.E00896 Erythranthe guttata HOM05D004537 ORTHO05D005492 4.4e-34 149.4 85 89.4
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 2.9e-33 146.7 90 77.8
Lalb_Chr11g0071071 Lupinus albus HOM05D004537 ORTHO05D005492 1.2e-31 141.4 93 78.5
SHI27476 Sapria himalayana HOM05D004537 ORTHO05D005492 3.0e-30 136.7 89 76.4
SHI01747 Sapria himalayana HOM05D004537 ORTHO05D005492 5.1e-30 136.0 166 54.8
CAN.G60.10 Capsicum annuum HOM05D004537 ORTHO05D005492 3.6e-28 129.8 93 72.0
SHI26666 Sapria himalayana HOM05D004537 ORTHO05D005492 6.2e-28 129.0 103 67.0
CAN.G999.40 Capsicum annuum HOM05D004537 ORTHO05D005492 2.6e-26 123.6 76 81.6
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 4.9e-25 119.4 214 40.7
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 8.4e-25 118.6 76 75.0
MD13G1127000 Malus domestica HOM05D004537 ORTHO05D005492 5.4e-24 115.9 105 65.7
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 5.4e-24 115.9 80 71.2
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 2.7e-23 113.6 79 70.9
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 3.5e-23 113.2 84 66.7
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-21 108.2 97 61.9
ClCG09G001530 Citrullus lanatus HOM05D004537 ORTHO05D005492 8.1e-20 102.1 68 76.5
Mapoly0006s0021 Marchantia polymorpha HOM05D004537 ORTHO05D005492 3.1e-19 100.1 51 96.1
LjContig00315g0010412 Lotus japonicus HOM05D004537 ORTHO05D005492 4.0e-19 99.8 62 83.9
HanXRQChr16g0503301 Helianthus annuus HOM05D004537 ORTHO05D005492 1.5e-18 97.8 108 52.8
Medtr8g106255 Medicago truncatula HOM05D004537 ORTHO05D005492 1.5e-18 97.8 56 87.5
GSVIVG01012277001 Vitis vinifera HOM05D004537 ORTHO05D005492 9.9e-18 95.1 76 67.1
Lsat_1_v5_gn_4_114400 Lactuca sativa HOM05D004537 ORTHO05D005492 3.2e-16 90.1 76 64.5
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 4.2e-16 89.7 95 55.8
ECA240G1937 Erigeron canadensis HOM05D004537 ORTHO05D011667 1.2e-15 88.2 53 84.9
GSVIVG01020676001 Vitis vinifera HOM05D004537 ORTHO05D005492 4.6e-15 86.3 49 85.7
SHI20134 Sapria himalayana HOM05D004537 ORTHO05D005492 7.4e-13 79.0 50 74.0
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 8.1e-12 75.5 53 66.0
Glyma.03G094400 Glycine max HOM05D004537 ORTHO05D005492 1.8e-11 74.3 46 80.4
Nitab4.5_0003938g0030 Nicotiana tabacum HOM05D004537 ORTHO05D005492 2.0e-10 70.9 61 60.7
MELO3C021574.2 Cucumis melo HOM05D004537 ORTHO05D005492 1.3e-09 68.2 56 67.9
Haze_27411 Corylus avellana HOM05D004537 ORTHO05D005492 1.4e-08 64.7 44 75.0
HanXRQChr04g0127221 Helianthus annuus HOM05D004537 ORTHO05D005492 3.2e-08 63.5 44 79.5
Ah.03g142980 Amaranthus hybridus HOM05D001159 ORTHO05D005492 9.3e-08 62.0 40 82.5


User provided reference genes

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