Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_27660 Physcomitrium patens HOM05D006056 ORTHO05D007136 3.6e-80 301.6 159 100.0
Pp3c1_18440 Physcomitrium patens HOM05D006056 ORTHO05D007136 3.9e-26 122.1 201 47.8
Mapoly0006s0285 Marchantia polymorpha HOM05D006056 ORTHO05D007136 4.4e-22 108.6 65 83.1
AagrBONN_evm.TU.Sc2ySwM_117.3107 Anthoceros agrestis HOM05D006056 ORTHO05D007136 2.2e-21 106.3 65 81.5
CBR_g51450 Chara braunii HOM05D006056 ORTHO05D007136 1.6e-16 90.1 65 66.2
SMO146G0323 Selaginella moellendorffii HOM05D006056 ORTHO05D007136 4.9e-13 78.6 67 55.2
FAN01G1581 Fragaria x ananassa HOM05D006056 ORTHO05D007136 6.4e-13 78.2 66 53.0
MD02G1283300 Malus domestica HOM05D006056 ORTHO05D007136 6.4e-13 78.2 66 53.0
MD07G1048800 Malus domestica HOM05D006056 ORTHO05D007136 6.4e-13 78.2 66 53.0
FAN03G2563 Fragaria x ananassa HOM05D006056 ORTHO05D007136 8.4e-13 77.8 66 53.0
FAN10G2490 Fragaria x ananassa HOM05D006056 ORTHO05D007136 8.4e-13 77.8 66 53.0
PSO384G1577 Papaver somniferum HOM05D006056 ORTHO05D007136 8.4e-13 77.8 66 54.5
FvH4_7g03410 Fragaria vesca HOM05D006056 ORTHO05D007136 1.1e-12 77.4 66 53.0
Nn2g14790 Nelumbo nucifera HOM05D006056 ORTHO05D007136 1.1e-12 77.4 66 53.0
PSO339G3509 Papaver somniferum HOM05D006056 ORTHO05D007136 1.1e-12 77.4 66 54.5
Prupe.2G039200 Prunus persica HOM05D006056 ORTHO05D007136 1.9e-12 76.6 66 53.0
RcHm_v2.0_Chr1g0325731 Rosa chinensis HOM05D006056 ORTHO05D007136 1.9e-12 76.6 66 53.0
Lalb_Chr04g0264131 Lupinus albus HOM05D006056 ORTHO05D007136 3.2e-12 75.9 66 53.0
Ca_12968_v3 Cicer arietinum L. HOM05D006056 ORTHO05D007136 4.2e-12 75.5 66 51.5
Lj3g0018945 Lotus japonicus HOM05D006056 ORTHO05D007136 4.2e-12 75.5 66 53.0
Sed0016890 Sechium edule HOM05D006056 ORTHO05D007136 4.2e-12 75.5 66 50.0
Cpa.g.sc2293.2 Carica papaya HOM05D006056 ORTHO05D007136 5.4e-12 75.1 66 51.5
Medtr1g037680 Medicago truncatula HOM05D006056 ORTHO05D007136 5.4e-12 75.1 66 51.5
Psat5g221760 Pisum sativum HOM05D006056 ORTHO05D007136 7.1e-12 74.7 66 51.5
CDE05G0697 Ceratophyllum demersum HOM05D006056 ORTHO05D007136 9.3e-12 74.3 65 53.8
ClCG08G010680 Citrullus lanatus HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 50.0
Cc08_g11260 Coffea canephora HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 53.0
Glyma.04G135300 Glycine max HOM05D006056 ORTHO05D007136 9.3e-12 74.3 65 52.3
Glyma.11G156500 Glycine max HOM05D006056 ORTHO05D007136 9.3e-12 74.3 65 52.3
Manes.04G158100 Manihot esculenta HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 51.5
Phvul.005G025600 Phaseolus vulgaris HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 50.0
QL04p017566 Quercus lobata HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 50.0
TPR.G1448 Trifolium pratense HOM05D006056 ORTHO05D007136 9.3e-12 74.3 66 51.5
COL.COLO4_20678 Corchorus olitorius HOM05D006056 ORTHO05D007136 1.2e-11 73.9 65 50.8
FAN06G0497 Fragaria x ananassa HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 50.0
Gohir.D10G193500 Gossypium hirsutum HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 50.0
Gorai.011G216600 Gossypium raimondii HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 50.0
MCO07G215 Micromonas commoda HOM05D006056 ORTHO05D007136 1.2e-11 73.9 62 56.5
Nn7g36738 Nelumbo nucifera HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 51.5
Potri.001G028500 Populus trichocarpa HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 51.5
TWI38G2317 Tripterygium wilfordii HOM05D006056 ORTHO05D007136 1.2e-11 73.9 66 53.0
CsaV3_6G035850 Cucumis sativus L. HOM05D006056 ORTHO05D007136 2.1e-11 73.2 66 48.5
Hma1.2p1_0837F.1_g226040 Hydrangea macrophylla HOM05D006056 ORTHO05D007136 2.1e-11 73.2 66 50.0
Os08g0378900 Oryza sativa ssp. japonica HOM05D006056 ORTHO05D007136 2.1e-11 73.2 66 53.0
EL10Ac2g02787 Beta vulgaris HOM05D006056 ORTHO05D007136 2.7e-11 72.8 66 48.5
Lalb_Chr01g0014891 Lupinus albus HOM05D006056 ORTHO05D007136 2.7e-11 72.8 66 51.5
Solyc01g096480.2 Solanum lycopersicum HOM05D006056 ORTHO05D007136 2.7e-11 72.8 66 50.0
Sopen01g040210 Solanum pennellii HOM05D006056 ORTHO05D007136 2.7e-11 72.8 66 50.0
Atru.chr12.1257 Acer truncatum HOM05D006056 ORTHO05D007136 3.5e-11 72.4 66 50.0
Carub.0003s0627 Capsella rubella HOM05D006056 ORTHO05D007136 3.5e-11 72.4 66 50.0
Dinv32019 Davidia involucrata HOM05D006056 ORTHO05D007136 3.5e-11 72.4 65 50.8
Lsat_1_v5_gn_9_40260 Lactuca sativa HOM05D006056 ORTHO05D007136 3.5e-11 72.4 71 46.5
MBI13_g23031_MAGBIO Magnolia biondii HOM05D006056 ORTHO05D007136 3.5e-11 72.4 65 50.8
PGR044G1154 Punica granatum HOM05D006056 ORTHO05D007136 3.5e-11 72.4 66 48.5
vmacro13759 Vaccinium macrocarpon HOM05D006056 ORTHO05D007136 3.5e-11 72.4 66 48.5
BcaC05g30553 Brassica carinata HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 48.5
BNapus_Darmor_BZH_scaffold_117p00040 Brassica napus HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 48.5
BraA01t04419Z Brassica rapa HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 48.5
CAN.G1045.19 Capsicum annuum HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 50.0
Ciclev10002629m.g Citrus clementina HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 50.0
Eucgr.G03224 Eucalyptus grandis HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 48.5
Sabra01G0020900 Salix brachista HOM05D006056 ORTHO05D007136 4.6e-11 72.0 65 50.8
PGSC0003DMG400005407 Solanum tuberosum HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 50.0
GSVIVG01036664001 Vitis vinifera HOM05D006056 ORTHO05D007136 4.6e-11 72.0 66 50.0
ATR0782G243 Amborella trichopoda HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 48.5
Haze_03016 Corylus avellana HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 50.0
Haze_03023 Corylus avellana HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 50.0
Duzib114G0422 Durio zibethinus HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 48.5
Nitab4.5_0003481g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 50.0
Sp3g05700 Schrenkiella parvula HOM05D006056 ORTHO05D007136 6.0e-11 71.6 66 48.5
arahy.Tifrunner.gnm1.ann1.6DS776 Arachis hypogaea HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 50.0
arahy.Tifrunner.gnm1.ann1.X1BBAM Arachis hypogaea HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 50.0
MSTRG.16982 Avicennia marina HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 47.0
A05p41340 Brassica napus HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 48.5
BolC5t34710H Brassica oleracea HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 48.5
BraA05t22856Z Brassica rapa HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 48.5
CANSAT56G1604 Cannabis sativa HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 50.0
Hund13373 Selenicereus undatus HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 47.0
Thecc.10G150600 Theobroma cacao HOM05D006056 ORTHO05D007136 7.9e-11 71.2 66 48.5
Aa31LG5G17320 Aethionema arabicum HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 48.5
CiPaw.13G014800 Carya illinoinensis HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 50.0
Migut.B01239 Erythranthe guttata HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 47.0
Nitab4.5_0005808g0070 Nicotiana tabacum HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 50.0
Peaxi162Scf00082g00120 Petunia axillaris HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 50.0
SGA_v2.0_scaffold124G33607 Striga asiatica HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 48.5
THA.LOC104826732 Tarenaya hassleriana HOM05D006056 ORTHO05D007136 1.0e-10 70.9 66 50.0
Actinidia06230 Actinidia chinensis HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
C05p60560 Brassica napus HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
CSS0027846 Camellia sinensis var. sinensis HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
CARHR081330 Cardamine hirsuta HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
DCAR_031839 Daucus carota HOM05D006056 ORTHO05D007136 1.3e-10 70.5 69 44.9
Thhalv10021607m.g Eutrema salsugineum HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
Gohir.A10G186600 Gossypium hirsutum HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 47.0
HanXRQChr11g0341201 Helianthus annuus HOM05D006056 ORTHO05D007136 1.3e-10 70.5 66 48.5
HPP92_023265 Vanilla planifolia HOM05D002937 ORTHO05D003063 1.3e-10 70.5 59 54.2
HPP92_023300 Vanilla planifolia HOM05D002937 ORTHO05D003063 1.3e-10 70.5 59 54.2
Aqoxy1G00370 Aquilegia oxysepala HOM05D006056 ORTHO05D007136 1.7e-10 70.1 64 51.6
Dinv44692 Davidia involucrata HOM05D006056 ORTHO05D007136 1.7e-10 70.1 66 48.5
Actinidia10152 Actinidia chinensis HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 47.0
AL3G17840 Arabidopsis lyrata HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 48.5
AT3G06730 Arabidopsis thaliana HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 48.5
BolC1t05590H Brassica oleracea HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 47.0
Duzib106G1426 Durio zibethinus HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 47.0
Rhsim07G0067800 Rhododendron simsii HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 48.5
TAR633G2798 Trochodendron aralioides HOM05D006056 ORTHO05D007136 2.3e-10 69.7 66 47.0
unitig_736.g22224 Utricularia gibba HOM05D006056 ORTHO05D007136 2.3e-10 69.7 65 47.7
BcaC09g47915 Brassica carinata HOM05D006056 ORTHO05D007136 3.0e-10 69.3 66 45.5
MELO3C011393.2 Cucumis melo HOM05D006056 ORTHO05D007136 3.0e-10 69.3 68 48.5
Duzib106G0937 Durio zibethinus HOM05D006056 ORTHO05D007136 6.6e-10 68.2 66 47.0
Duzib106G1601 Durio zibethinus HOM05D006056 ORTHO05D007136 8.7e-10 67.8 66 45.5
CiPaw.14G008500 Carya illinoinensis HOM05D006056 ORTHO05D007136 1.9e-09 66.6 66 47.0
Lj9A658G61 Lonicera japonica HOM05D006056 ORTHO05D007136 5.6e-09 65.1 66 43.9
Gorai.011G216500 Gossypium raimondii HOM05D006056 ORTHO05D007136 1.3e-08 63.9 65 46.2
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 4.8e-08 62.0 56 50.0
Cre02.g142800 Chlamydomonas reinhardtii HOM05D006056 ORTHO05D007136 1.5e-06 57.0 61 42.6


User provided reference genes

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