Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 3.1e-252 874.8 484 100.0
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 4.9e-72 276.2 317 50.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 4.9e-72 276.2 314 50.0
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 8.6e-69 265.4 497 42.3
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 1.5e-68 264.6 311 48.9
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.5e-68 264.6 314 50.0
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 1.5e-68 264.6 314 50.0
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 2.5e-68 263.8 317 50.5
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 7.3e-68 262.3 348 47.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 7.3e-68 262.3 349 46.1
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 9.5e-68 261.9 317 50.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.1e-67 260.8 314 48.7
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 2.1e-67 260.8 310 49.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.8e-67 260.4 321 48.9
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 3.6e-67 260.0 399 41.1
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 4.7e-67 259.6 317 47.6
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 4.7e-67 259.6 348 44.5
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 6.2e-67 259.2 312 48.7
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 8.1e-67 258.8 317 48.6
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 8.1e-67 258.8 314 48.7
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 8.1e-67 258.8 316 48.4
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 8.1e-67 258.8 319 47.0
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 1.1e-66 258.5 316 46.8
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 1.1e-66 258.5 316 47.8
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.4e-66 258.1 321 46.1
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.4e-66 258.1 316 48.7
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 2.4e-66 257.3 315 48.3
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 4.0e-66 256.5 284 51.4
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.0e-66 256.5 320 48.4
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 4.0e-66 256.5 315 48.6
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 5.2e-66 256.1 351 44.7
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 5.2e-66 256.1 321 47.0
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 5.2e-66 256.1 317 48.3
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 1.2e-65 255.0 345 45.2
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 1.5e-65 254.6 324 47.8
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 2.6e-65 253.8 317 48.9
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 3.4e-65 253.4 317 47.6
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 3.4e-65 253.4 320 46.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 4.4e-65 253.1 324 47.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.8e-65 252.7 314 46.2
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 5.8e-65 252.7 312 47.8
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 5.8e-65 252.7 317 46.1
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 9.9e-65 251.9 320 45.3
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 1.7e-64 251.1 320 47.2
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.7e-64 251.1 316 47.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.2e-64 250.8 316 45.9
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.8e-64 250.0 315 45.7
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 4.9e-64 249.6 352 44.6
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 4.9e-64 249.6 472 37.7
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 8.4e-64 248.8 314 45.2
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 8.4e-64 248.8 334 45.2
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 1.1e-63 248.4 474 38.6
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 1.4e-63 248.1 344 44.2
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.9e-63 247.7 315 46.0
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.4e-63 247.3 318 46.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.4e-63 247.3 314 46.8
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 4.2e-63 246.5 313 45.7
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.4e-63 246.1 341 43.7
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 7.1e-63 245.7 331 46.8
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.2e-63 245.4 313 45.7
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.2e-62 245.0 314 46.5
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 1.2e-62 245.0 353 44.8
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 1.2e-62 245.0 318 45.9
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.6e-62 244.6 284 48.6
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 4.6e-62 243.0 315 46.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.0e-62 242.7 316 47.5
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 6.0e-62 242.7 319 44.2
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.0e-61 241.9 314 45.5
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 3.0e-61 240.4 311 46.0
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 2.5e-60 237.3 357 44.3
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 3.6e-59 233.4 346 44.2
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 6.2e-59 232.6 323 42.1
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.8e-58 231.1 313 45.7
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-58 231.1 323 43.3
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 4.0e-58 229.9 318 46.5
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 9.0e-58 228.8 351 41.6
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.2e-57 228.4 305 44.9
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.4e-57 226.9 307 45.3
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 4.4e-57 226.5 454 37.7
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 8.4e-56 222.2 348 43.1
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 1.1e-55 221.9 313 43.1
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.1e-55 221.9 345 41.7
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 1.9e-55 221.1 316 43.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.6e-54 218.0 345 40.0
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.7e-54 217.2 299 46.5
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 6.0e-54 216.1 313 42.2
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 7.8e-54 215.7 321 41.4
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 1.0e-53 215.3 345 40.0
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.0e-53 215.3 296 45.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 2.3e-53 214.2 330 41.5
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 5.1e-53 213.0 313 41.2
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 1.1e-52 211.8 318 40.6
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 1.1e-52 211.8 316 40.5
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 1.1e-52 211.8 312 41.7
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.6e-51 208.0 288 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 2.1e-51 207.6 427 40.0
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 4.8e-51 206.5 324 40.1
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 8.1e-51 205.7 344 40.1
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.1e-50 205.3 350 38.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 2.4e-50 204.1 320 41.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.1e-50 203.8 314 42.0
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 6.9e-50 202.6 416 35.6
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 6.9e-50 202.6 293 42.3
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 5.8e-49 199.5 320 41.9
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 1.3e-48 198.4 315 39.4
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-48 197.2 277 46.6
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.3e-44 183.7 318 40.6
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.9e-42 176.0 256 43.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 2.9e-40 170.6 446 35.0
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 4.9e-40 169.9 318 38.4
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 9.3e-39 165.6 330 36.7
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 3.0e-37 160.6 318 38.4
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-36 158.3 259 43.6
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 7.4e-36 156.0 280 38.6
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.4e-34 151.8 189 47.6
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 6.9e-34 149.4 268 39.6
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 1.2e-30 138.7 313 34.2
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 6.7e-29 132.9 145 55.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.5e-28 131.7 401 30.7
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.0e-24 119.0 289 32.2
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 7.2e-23 112.8 142 44.4
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 7.2e-23 112.8 142 44.4
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.8e-21 108.2 86 52.3
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.0e-16 92.4 280 33.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.5e-15 87.8 186 35.5
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 1.6e-14 85.1 96 56.2
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.7e-11 75.1 72 56.9
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 4.1e-10 70.5 93 45.2
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 1.5e-09 68.6 39 69.2
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.5e-07 62.0 98 40.8
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 3.6e-06 57.4 65 49.2


User provided reference genes

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