Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 5.9e-278 960.3 506 100.0
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.3e-171 607.1 521 65.6
Pp3c10_2450 Physcomitrium patens HOM05D027689 ORTHO05D018028 7.8e-20 102.8 141 39.0
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 6.8e-16 89.7 90 48.9
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 1.2e-15 89.0 89 46.1
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 2.0e-15 88.2 88 47.7
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 4.4e-15 87.0 100 41.0
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 2.2e-14 84.7 93 45.2
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 2.2e-14 84.7 108 41.7
Pp3c14_2500 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.9e-14 84.3 126 38.9
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 2.9e-14 84.3 90 42.2
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.7e-14 84.0 100 41.0
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 3.7e-14 84.0 86 43.0
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 8.3e-14 82.8 126 39.7
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.3e-14 82.8 123 35.0
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 8.3e-14 82.8 88 44.3
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 1.1e-13 82.4 117 39.3
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.4e-13 82.0 100 40.0
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 1.8e-13 81.6 87 43.7
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.8e-13 81.6 90 43.3
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.8e-13 81.6 90 43.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 2.4e-13 81.3 123 35.0
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 3.2e-13 80.9 89 41.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.2e-13 80.9 89 43.8
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 4.1e-13 80.5 88 45.5
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 4.1e-13 80.5 117 36.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 5.4e-13 80.1 86 43.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 9.2e-13 79.3 85 43.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 9.2e-13 79.3 87 44.8
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 1.2e-12 79.0 86 43.0
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.2e-12 79.0 90 44.4
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.6e-12 78.6 121 40.5
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.6e-12 78.6 120 41.7
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-12 78.2 89 43.8
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.0e-12 78.2 91 45.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 2.0e-12 78.2 92 44.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.7e-12 77.8 89 43.8
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.7e-12 77.8 89 43.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 2.7e-12 77.8 120 40.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 3.5e-12 77.4 91 42.9
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 3.5e-12 77.4 106 37.7
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.6e-12 77.0 124 31.5
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 5.9e-12 76.6 89 43.8
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 5.9e-12 76.6 108 37.0
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 5.9e-12 76.6 90 43.3
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 5.9e-12 76.6 86 43.0
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 7.8e-12 76.3 100 37.0
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 1.0e-11 75.9 89 43.8
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.0e-11 75.9 89 44.9
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 1.0e-11 75.9 102 39.2
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 1.0e-11 75.9 91 40.7
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 1.0e-11 75.9 86 44.2
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.0e-11 75.9 90 43.3
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 1.3e-11 75.5 89 44.9
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-11 75.5 88 42.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.3e-11 75.5 86 44.2
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.7e-11 75.1 95 42.1
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.7e-11 75.1 90 43.3
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.7e-11 75.1 85 44.7
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.7e-11 75.1 86 43.0
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 2.3e-11 74.7 90 43.3
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 2.3e-11 74.7 88 42.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.0e-11 74.3 88 38.6
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.0e-11 74.3 90 37.8
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 3.0e-11 74.3 88 39.8
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.9e-11 73.9 86 40.7
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 3.9e-11 73.9 88 39.8
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 3.9e-11 73.9 89 42.7
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 3.9e-11 73.9 87 41.4
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.9e-11 73.9 118 37.3
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 5.0e-11 73.6 90 41.1
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.0e-11 73.6 89 42.7
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 5.0e-11 73.6 114 35.1
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 5.0e-11 73.6 83 41.0
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 5.0e-11 73.6 89 39.3
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 5.0e-11 73.6 89 43.8
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 5.0e-11 73.6 111 36.0
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 6.6e-11 73.2 85 42.4
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 6.6e-11 73.2 136 33.1
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 6.6e-11 73.2 100 38.0
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 6.6e-11 73.2 269 27.9
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.6e-11 73.2 85 42.4
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 8.6e-11 72.8 124 30.6
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 8.6e-11 72.8 87 42.5
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 1.1e-10 72.4 196 27.6
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.1e-10 72.4 139 31.7
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.1e-10 72.4 96 38.5
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.1e-10 72.4 95 41.1
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-10 72.4 86 37.2
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 1.5e-10 72.0 89 40.4
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 1.5e-10 72.0 89 40.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 1.5e-10 72.0 89 40.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.5e-10 72.0 67 50.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.5e-10 72.0 90 40.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 1.9e-10 71.6 108 35.2
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 2.5e-10 71.2 87 43.7
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 2.5e-10 71.2 90 35.6
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 2.5e-10 71.2 123 32.5
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.3e-10 70.9 89 41.6
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 3.3e-10 70.9 85 37.6
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 3.3e-10 70.9 106 36.8
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.3e-10 70.5 91 41.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 5.6e-10 70.1 90 42.2
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.6e-10 70.1 251 29.9
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 5.6e-10 70.1 251 29.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 5.6e-10 70.1 257 25.7
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 7.3e-10 69.7 92 31.5
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 7.3e-10 69.7 108 35.2
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 7.3e-10 69.7 87 40.2
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 9.5e-10 69.3 82 45.1
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 9.5e-10 69.3 82 45.1
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 1.2e-09 68.9 89 37.1
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 1.2e-09 68.9 89 37.1
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 1.2e-09 68.9 90 35.6
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.2e-09 68.9 87 41.4
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 1.6e-09 68.6 87 39.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.1e-09 68.2 87 37.9
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.8e-09 67.8 107 35.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.8e-09 67.8 86 43.0
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 4.7e-09 67.0 145 30.3
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.7e-09 67.0 86 38.4
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 6.2e-09 66.6 87 37.9
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.2e-09 66.6 86 38.4
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 8.0e-09 66.2 113 33.6
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.0e-08 65.9 87 36.8
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 1.0e-08 65.9 367 24.3
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 1.8e-08 65.1 67 46.3
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 5.2e-08 63.5 89 33.7
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.2e-08 63.5 267 24.7
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 5.8e-07 60.1 77 41.6
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 7.5e-07 59.7 261 25.3
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 8.3e-06 56.2 282 26.2


User provided reference genes

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