Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 0.0e+00 2002.6 1030 100.0
Mapoly0016s0037 Marchantia polymorpha HOM05D006140 ORTHO05D007834 5.7e-70 270.4 919 27.7
AagrBONN_evm.TU.Sc2ySwM_344.4141 Anthoceros agrestis HOM05D006140 ORTHO05D007834 1.4e-44 186.0 763 25.8
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 9.8e-38 163.3 836 24.3
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.2e-29 135.6 833 23.2
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 1.4e-28 132.9 686 23.0
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 8.6e-26 123.6 608 24.3
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.1e-25 123.2 624 25.3
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 4.3e-25 121.3 608 24.3
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 5.6e-25 120.9 608 23.7
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 2.8e-24 118.6 576 26.0
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.4e-22 111.7 634 23.2
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 5.8e-22 110.9 615 22.6
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.3e-21 109.8 634 23.0
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 1.7e-21 109.4 620 22.4
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.9e-21 108.6 629 22.6
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 6.4e-21 107.5 630 22.7
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 1.4e-20 106.3 616 21.9
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 2.4e-20 105.5 753 22.8
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 2.4e-20 105.5 430 25.1
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 2.4e-20 105.5 600 23.7
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.2e-20 105.1 632 23.6
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 4.2e-20 104.8 429 24.5
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 1.2e-19 103.2 425 24.9
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.3e-18 99.8 619 20.7
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 1.7e-18 99.4 637 22.6
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 2.3e-18 99.0 598 19.6
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 3.0e-18 98.6 433 23.6
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 3.9e-18 98.2 685 22.3
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 8.7e-18 97.1 754 23.1
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.9e-17 95.9 570 20.5
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.9e-17 95.9 425 24.0
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 3.3e-17 95.1 616 23.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 4.3e-17 94.7 609 22.2
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 5.6e-17 94.4 611 23.7
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.3e-16 93.2 612 21.1
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 1.6e-16 92.8 591 22.7
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 3.6e-16 91.7 608 21.4
CBR_g24386 Chara braunii HOM05D006140 ORTHO05D007834 6.2e-16 90.9 383 25.3
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.4e-15 89.7 632 23.1
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 1.8e-15 89.4 419 23.2
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 2.4e-15 89.0 430 22.8
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.4e-15 89.0 530 23.4
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 3.1e-15 88.6 636 21.1
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.1e-15 88.6 520 22.7
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 3.1e-15 88.6 432 23.1
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 5.3e-15 87.8 423 22.5
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 5.3e-15 87.8 423 22.5
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 5.3e-15 87.8 423 22.5
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 5.3e-15 87.8 603 21.1
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 1.2e-14 86.7 638 22.4
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 1.2e-14 86.7 356 25.0
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 2.0e-14 85.9 415 23.1
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 2.6e-14 85.5 547 23.4
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 7.6e-14 84.0 521 23.8
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 9.9e-14 83.6 421 23.8
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 9.9e-14 83.6 421 23.8
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 2.9e-13 82.0 491 23.4
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 3.8e-13 81.6 424 24.1
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 6.4e-13 80.9 603 19.6
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 6.4e-13 80.9 441 23.8
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 8.4e-13 80.5 614 20.8
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 3.2e-12 78.6 349 24.4
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 3.2e-12 78.6 398 24.1
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 3.2e-12 78.6 590 22.2
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 3.2e-12 78.6 389 23.7
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 5.4e-12 77.8 495 22.2
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 9.3e-12 77.0 611 22.9
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.2e-11 76.6 436 22.7
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 2.1e-11 75.9 634 20.7
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 4.6e-11 74.7 204 27.9
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 6.0e-11 74.3 809 21.8
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 3.9e-10 71.6 348 23.0
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 1.9e-09 69.3 348 22.4
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 1.9e-09 69.3 808 20.2
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 2.5e-09 68.9 431 21.3
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 5.6e-09 67.8 297 25.3
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 7.3e-09 67.4 348 21.8
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.6e-08 66.2 190 27.4
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.8e-08 65.5 351 22.8
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 3.6e-08 65.1 370 23.2
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 3.6e-08 65.1 370 23.2
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 6.2e-08 64.3 343 23.3
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 1.4e-07 63.2 357 20.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 1.4e-07 63.2 351 22.2
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 1.8e-07 62.8 418 19.4
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.8e-07 62.8 179 30.2
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.2e-06 60.1 172 27.3
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 2.0e-06 59.3 331 23.0
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 3.4e-06 58.5 177 27.1
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 9.9e-06 57.0 195 26.2


User provided reference genes

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