Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_22520 Physcomitrium patens HOM05D005828 ORTHO05D006822 1.3e-48 196.1 98 100.0
Mapoly0038s0094 Marchantia polymorpha HOM05D005828 ORTHO05D006822 2.6e-17 92.0 63 65.1
Prupe.1G501700 Prunus persica HOM05D005828 ORTHO05D006822 1.7e-16 89.4 71 57.7
AUR62011415 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.0e-16 87.8 84 54.8
AUR62022881 Chenopodium quinoa HOM05D005828 ORTHO05D006822 5.0e-16 87.8 84 54.8
EL10Ac9g21807 Beta vulgaris HOM05D005828 ORTHO05D006822 6.5e-16 87.4 76 57.9
CSS0005937 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.1e-15 86.7 83 51.8
Thhalv10009188m.g Eutrema salsugineum HOM05D005828 ORTHO05D006822 1.5e-15 86.3 70 57.1
THA.LOC104810143 Tarenaya hassleriana HOM05D005828 ORTHO05D006822 1.9e-15 85.9 94 48.9
BcaB07g32190 Brassica carinata HOM05D005828 ORTHO05D006822 2.5e-15 85.5 88 48.9
Ah.01g019990 Amaranthus hybridus HOM05D005828 ORTHO05D006822 4.2e-15 84.7 62 62.9
AT3G42150 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 4.2e-15 84.7 70 55.7
BcaB03g14247 Brassica carinata HOM05D005828 ORTHO05D006822 4.2e-15 84.7 92 45.7
CARHR022310 Cardamine hirsuta HOM05D005828 ORTHO05D006822 4.2e-15 84.7 71 54.9
ClCG11G015600 Citrullus lanatus HOM05D005828 ORTHO05D006822 4.2e-15 84.7 71 54.9
Lj1g0023360 Lotus japonicus HOM05D005828 ORTHO05D006822 4.2e-15 84.7 68 57.4
Nn7g37602 Nelumbo nucifera HOM05D005828 ORTHO05D006822 4.2e-15 84.7 71 54.9
PSO170G1674 Papaver somniferum HOM05D005828 ORTHO05D006822 4.2e-15 84.7 88 46.6
Sp1g19470 Schrenkiella parvula HOM05D005828 ORTHO05D006822 4.2e-15 84.7 70 55.7
ATR0021G028 Amborella trichopoda HOM05D005828 ORTHO05D006822 5.5e-15 84.3 74 52.7
BcaC05g26118 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-15 84.3 91 48.4
BcaC05g26120 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-15 84.3 91 48.4
C05p20980 Brassica napus HOM05D005828 ORTHO05D006822 5.5e-15 84.3 91 48.4
BolC5t30796H Brassica oleracea HOM05D005828 ORTHO05D006822 5.5e-15 84.3 91 48.4
Gohir.A06G042500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.5e-15 84.3 87 50.6
Gohir.D06G043500 Gossypium hirsutum HOM05D005828 ORTHO05D006822 5.5e-15 84.3 87 50.6
Gorai.010G048600 Gossypium raimondii HOM05D005828 ORTHO05D006822 5.5e-15 84.3 87 50.6
MD15G1353400 Malus domestica HOM05D005828 ORTHO05D006822 5.5e-15 84.3 70 55.7
Aa31LG7G5940 Aethionema arabicum HOM05D005828 ORTHO05D006822 7.2e-15 84.0 70 55.7
AL1G35150 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.2e-15 84.0 70 55.7
AL1G35290 Arabidopsis lyrata HOM05D005828 ORTHO05D006822 7.2e-15 84.0 70 55.7
AT1G21930 Arabidopsis thaliana HOM05D005828 ORTHO05D006822 7.2e-15 84.0 70 55.7
Carub.0001s2142 Capsella rubella HOM05D005828 ORTHO05D006822 7.2e-15 84.0 70 55.7
A09p42800 Brassica napus HOM05D005828 ORTHO05D006822 9.4e-15 83.6 91 47.3
Ciclev10002958m.g Citrus clementina HOM05D005828 ORTHO05D006822 9.4e-15 83.6 69 56.5
Cc10_g15090 Coffea canephora HOM05D005828 ORTHO05D006822 9.4e-15 83.6 68 57.4
Sed0016516 Sechium edule HOM05D005828 ORTHO05D006822 9.4e-15 83.6 71 53.5
Sc01g0001360 Simmondsia chinensis HOM05D005828 ORTHO05D006822 9.4e-15 83.6 61 63.9
BraA09t39754Z Brassica rapa HOM05D005828 ORTHO05D006822 1.2e-14 83.2 91 47.3
Lsat_1_v5_gn_9_83901 Lactuca sativa HOM05D005828 ORTHO05D006822 1.2e-14 83.2 76 51.3
Lalb_Chr04g0253341 Lupinus albus HOM05D005828 ORTHO05D006822 1.2e-14 83.2 79 51.9
Medtr5g059050 Medicago truncatula HOM05D005828 ORTHO05D006822 1.2e-14 83.2 65 58.5
Os12g0481200 Oryza sativa ssp. japonica HOM05D005828 ORTHO05D006822 1.2e-14 83.2 65 58.5
QL09p036513 Quercus lobata HOM05D005828 ORTHO05D006822 1.2e-14 83.2 65 58.5
GSVIVG01013096001 Vitis vinifera HOM05D005828 ORTHO05D006822 1.2e-14 83.2 71 53.5
Atru.chr13.1407 Acer truncatum HOM05D005828 ORTHO05D006822 1.6e-14 82.8 63 60.3
BolC5t30794H Brassica oleracea HOM05D005828 ORTHO05D006822 1.6e-14 82.8 89 48.3
CAN.G48.25 Capsicum annuum HOM05D005828 ORTHO05D006822 1.6e-14 82.8 73 54.8
Cpa.g.sc70.13 Carica papaya HOM05D005828 ORTHO05D006822 1.6e-14 82.8 71 53.5
Ca_03724_v3 Cicer arietinum L. HOM05D005828 ORTHO05D006822 1.6e-14 82.8 70 55.7
Duzib093G2142 Durio zibethinus HOM05D005828 ORTHO05D006822 1.6e-14 82.8 87 51.7
Hund16842 Selenicereus undatus HOM05D005828 ORTHO05D006822 1.6e-14 82.8 80 52.5
SGA_v2.0_scaffold52G18982 Striga asiatica HOM05D005828 ORTHO05D006822 1.6e-14 82.8 62 61.3
Zm00001eb318220 Zea mays HOM05D005828 ORTHO05D006822 1.6e-14 82.8 65 58.5
Actinidia23063 Actinidia chinensis HOM05D005828 ORTHO05D006822 2.1e-14 82.4 63 58.7
BcaC06g34917 Brassica carinata HOM05D005828 ORTHO05D006822 2.1e-14 82.4 70 54.3
C07p21820 Brassica napus HOM05D005828 ORTHO05D006822 2.1e-14 82.4 70 54.3
BolC7t42713H Brassica oleracea HOM05D005828 ORTHO05D006822 2.1e-14 82.4 70 54.3
Hma1.2p1_0248F.1_g102070 Hydrangea macrophylla HOM05D005828 ORTHO05D006822 2.1e-14 82.4 68 55.9
Nn1g08691 Nelumbo nucifera HOM05D005828 ORTHO05D006822 2.1e-14 82.4 71 53.5
Oeu050902.1 Olea europaea HOM05D005828 ORTHO05D006822 2.1e-14 82.4 62 61.3
Solyc03g093220.3 Solanum lycopersicum HOM05D005828 ORTHO05D006822 2.1e-14 82.4 69 56.5
Sopen03g024020 Solanum pennellii HOM05D005828 ORTHO05D006822 2.1e-14 82.4 69 56.5
Thecc.08G121200 Theobroma cacao HOM05D005828 ORTHO05D006822 2.1e-14 82.4 62 61.3
HPP92_010723 Vanilla planifolia HOM05D005828 ORTHO05D006822 2.1e-14 82.4 87 50.6
Eucgr.F03768 Eucalyptus grandis HOM05D005828 ORTHO05D006822 2.7e-14 82.0 70 54.3
arahy.Tifrunner.gnm1.ann1.IQQ61N Arachis hypogaea HOM05D005828 ORTHO05D006822 3.6e-14 81.6 63 58.7
CDE01G0185 Ceratophyllum demersum HOM05D005828 ORTHO05D006822 3.6e-14 81.6 68 54.4
AUR62016643 Chenopodium quinoa HOM05D005828 ORTHO05D006822 3.6e-14 81.6 52 69.2
Dinv40388 Davidia involucrata HOM05D005828 ORTHO05D006822 3.6e-14 81.6 63 58.7
ECA246G1275 Erigeron canadensis HOM05D005828 ORTHO05D006822 3.6e-14 81.6 69 53.6
Glyma.13G081900 Glycine max HOM05D005828 ORTHO05D006822 3.6e-14 81.6 63 58.7
Glyma.14G162800 Glycine max HOM05D005828 ORTHO05D006822 3.6e-14 81.6 63 58.7
Manes.18G074748 Manihot esculenta HOM05D005828 ORTHO05D006822 3.6e-14 81.6 63 58.7
vmacro15901 Vaccinium macrocarpon HOM05D005828 ORTHO05D006822 3.6e-14 81.6 75 54.7
CANSAT64G1100 Cannabis sativa HOM05D005828 ORTHO05D006822 4.7e-14 81.3 63 58.7
CiPaw.02G169200 Carya illinoinensis HOM05D005828 ORTHO05D006822 4.7e-14 81.3 62 59.7
HanXRQChr12g0379421 Helianthus annuus HOM05D005828 ORTHO05D006822 4.7e-14 81.3 69 52.2
Phvul.008G165500 Phaseolus vulgaris HOM05D005828 ORTHO05D006822 4.7e-14 81.3 63 58.7
Pp3c3_450 Physcomitrium patens HOM05D005828 ORTHO05D006822 4.7e-14 81.3 61 72.1
Rhsim10G0081200 Rhododendron simsii HOM05D005828 ORTHO05D006822 4.7e-14 81.3 63 58.7
TPR.G8500 Trifolium pratense HOM05D005828 ORTHO05D006822 4.7e-14 81.3 63 58.7
TAR628G1302 Trochodendron aralioides HOM05D005828 ORTHO05D006822 4.7e-14 81.3 63 57.1
BcaB07g32192 Brassica carinata HOM05D005828 ORTHO05D006822 6.1e-14 80.9 70 52.9
CsaV3_4G028420 Cucumis sativus L. HOM05D005828 ORTHO05D006822 6.1e-14 80.9 69 52.2
Migut.C01150 Erythranthe guttata HOM05D005828 ORTHO05D006822 6.1e-14 80.9 82 52.4
A07p14860 Brassica napus HOM05D005828 ORTHO05D006822 8.0e-14 80.5 70 52.9
MD08G1168000 Malus domestica HOM05D005828 ORTHO05D006822 8.0e-14 80.5 59 61.0
unitig_22.g6732 Utricularia gibba HOM05D005828 ORTHO05D006822 8.0e-14 80.5 78 48.7
Aqoxy6G00155 Aquilegia oxysepala HOM05D005828 ORTHO05D006822 1.0e-13 80.1 90 45.6
Duzib041G0320 Durio zibethinus HOM05D005828 ORTHO05D006822 1.0e-13 80.1 62 58.1
Migut.G00970 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.0e-13 80.1 62 61.3
Migut.K01196 Erythranthe guttata HOM05D005828 ORTHO05D006822 1.0e-13 80.1 62 61.3
PSO528G0081 Papaver somniferum HOM05D005828 ORTHO05D006822 1.0e-13 80.1 91 44.0
Potri.002G086300 Populus trichocarpa HOM05D005828 ORTHO05D006822 1.0e-13 80.1 63 57.1
PGR042G1795 Punica granatum HOM05D005828 ORTHO05D006822 1.0e-13 80.1 62 59.7
CSS0009962 Camellia sinensis var. sinensis HOM05D005828 ORTHO05D006822 1.8e-13 79.3 67 56.7
Dinv27340 Davidia involucrata HOM05D005828 ORTHO05D006822 1.8e-13 79.3 71 53.5
FAN27G1656 Fragaria x ananassa HOM05D005828 ORTHO05D006822 1.8e-13 79.3 59 57.6
MBI11_g22242_MAGBIO Magnolia biondii HOM05D005828 ORTHO05D006822 1.8e-13 79.3 61 59.0
Rhsim02G0128100 Rhododendron simsii HOM05D005828 ORTHO05D006822 1.8e-13 79.3 59 61.0
MELO3C010460.2 Cucumis melo HOM05D005828 ORTHO05D006822 2.3e-13 79.0 55 63.6
FvH4_2g26520 Fragaria vesca HOM05D005828 ORTHO05D006822 2.3e-13 79.0 62 56.5
FAN24G3109 Fragaria x ananassa HOM05D005828 ORTHO05D006822 2.3e-13 79.0 62 56.5
Peaxi162Scf00241g00022 Petunia axillaris HOM05D005828 ORTHO05D006822 2.3e-13 79.0 61 60.7
Psat2g078520 Pisum sativum HOM05D005828 ORTHO05D006822 2.3e-13 79.0 62 58.1
RcHm_v2.0_Chr6g0295391 Rosa chinensis HOM05D005828 ORTHO05D006822 2.3e-13 79.0 62 56.5
PGSC0003DMG400014827 Solanum tuberosum HOM05D005828 ORTHO05D006822 2.3e-13 79.0 55 63.6
DCAR_014096 Daucus carota HOM05D005828 ORTHO05D006822 3.0e-13 78.6 67 58.2
DCAR_014107 Daucus carota HOM05D005828 ORTHO05D006822 3.0e-13 78.6 84 47.6
TWI56G1238 Tripterygium wilfordii HOM05D005828 ORTHO05D006822 4.0e-13 78.2 68 51.5
Haze_00481 Corylus avellana HOM05D005828 ORTHO05D006822 5.2e-13 77.8 52 65.4
RhsimUnG0054200 Rhododendron simsii HOM05D005828 ORTHO05D006822 5.2e-13 77.8 52 65.4
SalBow1G4500 Salvia bowleyana HOM05D005828 ORTHO05D006822 5.2e-13 77.8 52 67.3
FAN15G3227 Fragaria x ananassa HOM05D005828 ORTHO05D006822 6.8e-13 77.4 61 57.4
Sabra02G0067700 Salix brachista HOM05D005828 ORTHO05D006822 6.8e-13 77.4 52 63.5
Nitab4.5_0010023g0030 Nicotiana tabacum HOM05D005828 ORTHO05D006822 8.8e-13 77.0 61 57.4
SHI08265 Sapria himalayana HOM05D005828 ORTHO05D006822 1.5e-12 76.3 71 53.5
QL09p035324 Quercus lobata HOM05D005828 ORTHO05D006822 2.0e-12 75.9 55 61.8
HPP92_010646 Vanilla planifolia HOM05D005828 ORTHO05D006822 2.0e-12 75.9 87 47.1
Nitab4.5_0002816g0110 Nicotiana tabacum HOM05D005828 ORTHO05D006822 7.5e-12 73.9 61 55.7
AagrBONN_evm.TU.Sc2ySwM_368.871 Anthoceros agrestis HOM05D005828 ORTHO05D006822 2.4e-10 68.9 70 48.6
SEGI_28823 Sequoiadendron giganteum HOM05D005828 ORTHO05D006822 2.9e-08 62.0 49 63.3
SMO232G0111 Selaginella moellendorffii HOM05D005828 ORTHO05D006822 5.0e-08 61.2 47 55.3
BcaC07g42575 Brassica carinata HOM05D005828 ORTHO05D006822 5.5e-07 57.8 64 43.8
Medtr5g058700 Medicago truncatula HOM05D005828 ORTHO05D006822 6.1e-06 54.3 42 59.5


User provided reference genes

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