Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_21870 Physcomitrium patens HOM05D012251 ORTHO05D012302 3.0e-136 488.4 235 100.0
Pp3c3_2190 Physcomitrium patens HOM05D012251 ORTHO05D012302 2.5e-77 292.7 234 60.7
Pp3c13_5590 Physcomitrium patens HOM05D012251 ORTHO05D012302 2.6e-71 272.7 234 59.0
Pp3c24_13210 Physcomitrium patens HOM05D012251 ORTHO05D012302 1.5e-37 160.6 152 55.9
Mapoly0053s0029 Marchantia polymorpha HOM05D012251 ORTHO05D012302 1.4e-16 90.9 229 31.9
Pp3c3_2160 Physcomitrium patens HOM05D028196 ORTHO05D012302 1.6e-15 87.4 212 33.0
CDE06G2562 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 1.6e-12 77.4 92 45.7
TAR371G1012 Trochodendron aralioides HOM05D012251 ORTHO05D012302 2.1e-12 77.0 107 41.1
CDE02G0472 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 6.2e-12 75.5 86 46.5
SEGI_36930 Sequoiadendron giganteum HOM05D012251 ORTHO05D012302 8.0e-12 75.1 147 34.7
Mapoly0013s0104 Marchantia polymorpha HOM05D062711 ORTHO05D012302 1.0e-11 74.7 93 43.0
ATR0582G277 Amborella trichopoda HOM05D012251 ORTHO05D012302 2.6e-10 70.1 94 40.4
PSO339G0033 Papaver somniferum HOM05D001767 ORTHO05D001714 3.7e-09 66.2 62 45.2
PSO384G2891 Papaver somniferum HOM05D001767 ORTHO05D001714 3.7e-09 66.2 62 45.2
Pp3c23_10020 Physcomitrium patens HOM05D028196 ORTHO05D012302 3.7e-09 66.2 108 34.3
Nn3g16173 Nelumbo nucifera HOM05D012251 ORTHO05D012302 6.4e-09 65.5 151 29.8
Glyma.14G199900 Glycine max HOM05D001767 ORTHO05D001714 8.3e-09 65.1 66 43.9
CSS0019780 Camellia sinensis var. sinensis HOM05D001767 ORTHO05D001714 1.4e-08 64.3 62 41.9
Ca_15012_v3 Cicer arietinum L. HOM05D001767 ORTHO05D001714 1.4e-08 64.3 76 39.5
Manes.18G145405 Manihot esculenta HOM05D001767 ORTHO05D001714 1.9e-08 63.9 66 40.9
SEGI_39353 Sequoiadendron giganteum HOM05D001767 ORTHO05D001714 1.9e-08 63.9 62 43.5
CANSAT54G2108 Cannabis sativa HOM05D001767 ORTHO05D001714 2.4e-08 63.5 62 41.9
CDE02G3644 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 2.4e-08 63.5 73 43.8
CDE09G0490 Ceratophyllum demersum HOM05D012251 ORTHO05D012302 3.2e-08 63.2 73 43.8
Oeu050020.1 Olea europaea HOM05D001767 ORTHO05D001714 3.2e-08 63.2 82 40.2
Phvul.008G251500 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 4.1e-08 62.8 68 42.6
TPR.G25323 Trifolium pratense HOM05D001767 ORTHO05D001714 4.1e-08 62.8 62 41.9
Sed0020267 Sechium edule HOM05D001767 ORTHO05D001714 5.4e-08 62.4 81 35.8
CsaV3_6G018940 Cucumis sativus L. HOM05D001767 ORTHO05D001714 7.0e-08 62.0 80 37.5
DCAR_012266 Daucus carota HOM05D001767 ORTHO05D001714 7.0e-08 62.0 62 40.3
Glyma.11G163800 Glycine max HOM05D001767 ORTHO05D001714 7.0e-08 62.0 62 41.9
Glyma.18G057000 Glycine max HOM05D001767 ORTHO05D001714 7.0e-08 62.0 62 41.9
Pp3c2_3800 Physcomitrium patens HOM05D023407 ORTHO05D025815 7.0e-08 62.0 78 37.2
Sp4g12810 Schrenkiella parvula HOM05D001767 ORTHO05D001714 7.0e-08 62.0 62 41.9
arahy.Tifrunner.gnm1.ann1.ADC2ZV Arachis hypogaea HOM05D001767 ORTHO05D001714 9.2e-08 61.6 66 39.4
arahy.Tifrunner.gnm1.ann1.K9E1NX Arachis hypogaea HOM05D001767 ORTHO05D001714 9.2e-08 61.6 66 39.4
Eucgr.B04008 Eucalyptus grandis HOM05D001767 ORTHO05D001714 9.2e-08 61.6 66 42.4
Glyma.02G232500 Glycine max HOM05D001767 ORTHO05D001714 9.2e-08 61.6 66 40.9
Nn1g09120 Nelumbo nucifera HOM05D001767 ORTHO05D001714 9.2e-08 61.6 68 41.2
THA.LOC104800766 Tarenaya hassleriana HOM05D001767 ORTHO05D001714 9.2e-08 61.6 62 40.3
A09p66640 Brassica napus HOM05D001767 ORTHO05D001714 1.2e-07 61.2 95 33.7
CARHR006650 Cardamine hirsuta HOM05D001767 ORTHO05D001714 1.2e-07 61.2 62 41.9
MELO3C025688.2 Cucumis melo HOM05D001767 ORTHO05D001714 1.2e-07 61.2 80 36.2
Mapoly0212s0004 Marchantia polymorpha HOM05D023407 ORTHO05D025815 1.2e-07 61.2 75 38.7
Medtr5g074290 Medicago truncatula HOM05D001767 ORTHO05D001714 1.2e-07 61.2 62 40.3
Sed0010690 Sechium edule HOM05D001767 ORTHO05D001714 1.2e-07 61.2 66 40.9
SEGI_39227 Sequoiadendron giganteum HOM05D028090 ORTHO05D012302 1.2e-07 61.2 80 40.0
THA.LOC104826272 Tarenaya hassleriana HOM05D001767 ORTHO05D001714 1.2e-07 61.2 76 36.8
VMungo0647G1881 Vigna mungo HOM05D001767 ORTHO05D001714 1.2e-07 61.2 113 31.0
BcaB02g10309 Brassica carinata HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 40.3
BcaC07g42552 Brassica carinata HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 41.9
Cpa.g.sc2.349 Carica papaya HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 40.3
Duzib168G0893 Durio zibethinus HOM05D001767 ORTHO05D001714 1.6e-07 60.8 80 35.0
Lsat_1_v5_gn_9_14641 Lactuca sativa HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 40.3
Nn2g13272 Nelumbo nucifera HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 40.3
Psat0s3744g0040 Pisum sativum HOM05D001767 ORTHO05D001714 1.6e-07 60.8 62 40.3
GSVIVG01024628001 Vitis vinifera HOM05D001767 ORTHO05D001714 1.6e-07 60.8 66 39.4
Ca_05675_v3 Cicer arietinum L. HOM05D001767 ORTHO05D001714 2.0e-07 60.5 66 39.4
ClCG02G019220 Citrullus lanatus HOM05D001767 ORTHO05D001714 2.0e-07 60.5 66 39.4
HanXRQChr08g0228601 Helianthus annuus HOM05D001767 ORTHO05D001714 2.0e-07 60.5 62 40.3
Aa31LG5G6480 Aethionema arabicum HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
AL4G25060 Arabidopsis lyrata HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
BcaC02g08037 Brassica carinata HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
BcaC02g11109 Brassica carinata HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
A03p16890 Brassica napus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
A04p23020 Brassica napus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
A05p15220 Brassica napus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
C04p20270 Brassica napus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
C04p59140 Brassica napus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
BolC4t27425H Brassica oleracea HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
BraA03t10977Z Brassica rapa HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
BraA05t20440Z Brassica rapa HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
Carub.0004s1139 Capsella rubella HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
COL.COLO4_11161 Corchorus olitorius HOM05D001767 ORTHO05D001714 2.7e-07 60.1 66 39.4
Thhalv10017978m.g Eutrema salsugineum HOM05D001767 ORTHO05D001714 2.7e-07 60.1 62 40.3
Lalb_Chr18g0051411 Lupinus albus HOM05D001767 ORTHO05D001714 2.7e-07 60.1 66 39.4
Oeu007789.1 Olea europaea HOM05D001767 ORTHO05D001714 2.7e-07 60.1 66 40.9
PGR119G0485 Punica granatum HOM05D001767 ORTHO05D001714 2.7e-07 60.1 68 44.1
Aa31LG1G8010 Aethionema arabicum HOM05D001767 ORTHO05D001714 3.5e-07 59.7 62 40.3
BcaB06g28352 Brassica carinata HOM05D001767 ORTHO05D001714 3.5e-07 59.7 62 40.3
BcaC07g42033 Brassica carinata HOM05D001767 ORTHO05D001714 3.5e-07 59.7 96 32.3
C08p50870 Brassica napus HOM05D001767 ORTHO05D001714 3.5e-07 59.7 96 32.3
BolC8t52615H Brassica oleracea HOM05D001767 ORTHO05D001714 3.5e-07 59.7 96 32.3
Ciclev10003692m.g Citrus clementina HOM05D001767 ORTHO05D001714 3.5e-07 59.7 66 39.4
HanXRQChr17g0565091 Helianthus annuus HOM05D001767 ORTHO05D001714 3.5e-07 59.7 97 36.1
Lalb_Chr10g0103631 Lupinus albus HOM05D001767 ORTHO05D001714 3.5e-07 59.7 66 39.4
Mapoly0171s0007 Marchantia polymorpha HOM05D018206 ORTHO05D013164 3.5e-07 59.7 81 38.3
Nn2g11025 Nelumbo nucifera HOM05D001767 ORTHO05D001714 3.5e-07 59.7 62 38.7
RcHm_v2.0_Chr5g0071711 Rosa chinensis HOM05D001767 ORTHO05D001714 3.5e-07 59.7 62 38.7
TAR633G0198 Trochodendron aralioides HOM05D001767 ORTHO05D001714 3.5e-07 59.7 62 40.3
CARHR123530 Cardamine hirsuta HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
FvH4_3g39820 Fragaria vesca HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
FAN11G3179 Fragaria x ananassa HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
FAN16G1848 Fragaria x ananassa HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
FAN21G2420 Fragaria x ananassa HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
FAN25G0410 Fragaria x ananassa HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
Lsat_1_v5_gn_5_174081 Lactuca sativa HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
Peaxi162Scf00053g00082 Petunia axillaris HOM05D001767 ORTHO05D001714 4.6e-07 59.3 62 40.3
Aqoxy2G00765 Aquilegia oxysepala HOM05D001767 ORTHO05D001714 6.0e-07 58.9 67 38.8
MSTRG.7411 Avicennia marina HOM05D001767 ORTHO05D001714 6.0e-07 58.9 67 40.3
BraA04t17835Z Brassica rapa HOM05D001767 ORTHO05D001714 7.8e-07 58.5 62 40.3
FvH4_4g07400 Fragaria vesca HOM05D006970 ORTHO05D008332 7.8e-07 58.5 68 47.1
FAN12G3539 Fragaria x ananassa HOM05D006970 ORTHO05D008332 7.8e-07 58.5 68 47.1
Aqoxy1G01274 Aquilegia oxysepala HOM05D001767 ORTHO05D001714 1.0e-06 58.2 62 38.7
BcaB03g13412 Brassica carinata HOM05D001767 ORTHO05D001714 1.0e-06 58.2 62 40.3
CiPaw.13G068600 Carya illinoinensis HOM05D001767 ORTHO05D001714 1.0e-06 58.2 118 32.2
FAN07G0294 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.0e-06 58.2 68 47.1
FAN22G0526 Fragaria x ananassa HOM05D006970 ORTHO05D008332 1.0e-06 58.2 68 47.1
Pp3c4_21860 Physcomitrium patens HOM05D028196 ORTHO05D012302 1.0e-06 58.2 73 41.1
GSVIVG01021218001 Vitis vinifera HOM05D001767 ORTHO05D001714 1.0e-06 58.2 66 39.4
AT2G30230 Arabidopsis thaliana HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
A08p35820 Brassica napus HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
C08p02770 Brassica napus HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
BolC8t47072H Brassica oleracea HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
BraA08t35489Z Brassica rapa HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
Nn1g04422 Nelumbo nucifera HOM05D001767 ORTHO05D001714 1.3e-06 57.8 69 39.1
Peaxi162Scf00055g00161 Petunia axillaris HOM05D001767 ORTHO05D001714 1.3e-06 57.8 63 41.3
TWI79G1459 Tripterygium wilfordii HOM05D001767 ORTHO05D001714 1.3e-06 57.8 62 38.7
Cfa013442 Carpinus fangiana HOM05D006970 ORTHO05D008332 1.7e-06 57.4 77 40.3
DCAR_005215 Daucus carota HOM05D001767 ORTHO05D001714 1.7e-06 57.4 68 39.7
ECA248G1839 Erigeron canadensis HOM05D001767 ORTHO05D001714 1.7e-06 57.4 62 38.7
QL02p047741 Quercus lobata HOM05D006970 ORTHO05D008332 1.7e-06 57.4 78 41.0
SEGI_35510 Sequoiadendron giganteum HOM05D001767 ORTHO05D001714 1.7e-06 57.4 214 25.2
TAR623G0326 Trochodendron aralioides HOM05D001767 ORTHO05D001714 1.7e-06 57.4 69 37.7
BcaC01g06022 Brassica carinata HOM05D001767 ORTHO05D001714 2.3e-06 57.0 62 38.7
C03p19870 Brassica napus HOM05D001767 ORTHO05D001714 2.3e-06 57.0 62 38.7
BolC3t14365H Brassica oleracea HOM05D001767 ORTHO05D001714 2.3e-06 57.0 62 38.7
Duzib168G1189 Durio zibethinus HOM05D006970 ORTHO05D008332 2.3e-06 57.0 81 37.0
FAN17G1729 Fragaria x ananassa HOM05D006970 ORTHO05D008332 2.3e-06 57.0 68 47.1
Potri.019G123900 Populus trichocarpa HOM05D001767 ORTHO05D001714 2.3e-06 57.0 62 40.3
SalBow8G3465 Salvia bowleyana HOM05D001767 ORTHO05D001714 2.3e-06 57.0 66 39.4
BolC4t23566H Brassica oleracea HOM05D001767 ORTHO05D001714 3.0e-06 56.6 63 39.7
Manes.16G040300 Manihot esculenta HOM05D001767 ORTHO05D001714 3.0e-06 56.6 67 37.3
Sc12g0001940 Simmondsia chinensis HOM05D001767 ORTHO05D001714 3.0e-06 56.6 62 38.7
Duzib192G0143 Durio zibethinus HOM05D001767 ORTHO05D001714 3.9e-06 56.2 67 38.8
Glyma.13G229500 Glycine max HOM05D001767 ORTHO05D001714 3.9e-06 56.2 68 38.2
Gohir.A03G025200 Gossypium hirsutum HOM05D001767 ORTHO05D001714 3.9e-06 56.2 62 37.1
MBI15_g28867_MAGBIO Magnolia biondii HOM05D001767 ORTHO05D001714 3.9e-06 56.2 62 38.7
Os01g0758500 Oryza sativa ssp. japonica HOM05D001767 ORTHO05D001714 3.9e-06 56.2 72 36.1
Zm00001eb013820 Zea mays HOM05D001767 ORTHO05D001714 3.9e-06 56.2 74 35.1
Eucgr.C00123 Eucalyptus grandis HOM05D006970 ORTHO05D008332 5.0e-06 55.8 78 41.0
Glyma.15G083000 Glycine max HOM05D001767 ORTHO05D001714 5.0e-06 55.8 68 38.2
Gohir.D03G143300 Gossypium hirsutum HOM05D001767 ORTHO05D001714 5.0e-06 55.8 62 37.1
Gorai.003G150600 Gossypium raimondii HOM05D001767 ORTHO05D001714 5.0e-06 55.8 62 37.1
Phvul.006G175900 Phaseolus vulgaris HOM05D001767 ORTHO05D001714 5.0e-06 55.8 68 36.8
Thecc.06G170200 Theobroma cacao HOM05D001767 ORTHO05D001714 5.0e-06 55.8 67 37.3
ClCG03G007660 Citrullus lanatus HOM05D001767 ORTHO05D001714 6.6e-06 55.5 77 31.2
Duzib160G0244 Durio zibethinus HOM05D001767 ORTHO05D001714 6.6e-06 55.5 67 35.8
Os03g0298100 Oryza sativa ssp. japonica HOM05D001767 ORTHO05D001714 6.6e-06 55.5 74 35.1
Sed0022533 Sechium edule HOM05D001767 ORTHO05D001714 6.6e-06 55.5 67 37.3
Solyc06g007370.1 Solanum lycopersicum HOM05D001767 ORTHO05D001714 6.6e-06 55.5 63 39.7
Sopen06g002300 Solanum pennellii HOM05D001767 ORTHO05D001714 6.6e-06 55.5 63 39.7
PGSC0003DMG400020549 Solanum tuberosum HOM05D001767 ORTHO05D001714 6.6e-06 55.5 63 39.7
Dinv41166 Davidia involucrata HOM05D006970 ORTHO05D008332 8.6e-06 55.1 131 28.2
Duzib235G0814 Durio zibethinus HOM05D001767 ORTHO05D001714 8.6e-06 55.1 67 37.3
Migut.M01036 Erythranthe guttata HOM05D001767 ORTHO05D001714 8.6e-06 55.1 67 35.8
Eucgr.D00486 Eucalyptus grandis HOM05D001767 ORTHO05D001714 8.6e-06 55.1 70 34.3
RcHm_v2.0_Chr5g0010861 Rosa chinensis HOM05D001767 ORTHO05D001714 8.6e-06 55.1 70 38.6
Thecc.09G184400 Theobroma cacao HOM05D006970 ORTHO05D008332 8.6e-06 55.1 89 32.6
TAR452G0002 Trochodendron aralioides HOM05D001767 ORTHO05D001714 8.6e-06 55.1 69 37.7
VMungo0540G2071 Vigna mungo HOM05D001767 ORTHO05D001714 8.6e-06 55.1 68 36.8


User provided reference genes

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