Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 0.0e+00 1121.7 585 100.0
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 9.0e-254 880.2 590 80.3
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 1.4e-209 733.4 551 70.6
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 2.8e-207 725.7 538 70.3
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 1.7e-204 716.5 488 74.0
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 1.1e-203 713.8 500 73.4
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 3.2e-203 712.2 490 74.5
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 6.1e-202 708.0 505 72.5
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 3.0e-201 705.7 485 73.4
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 6.7e-201 704.5 497 72.0
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 2.0e-200 703.0 467 75.2
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.4e-200 701.8 517 70.0
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 5.7e-200 701.4 488 73.8
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 5.7e-200 701.4 545 68.6
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 7.4e-200 701.0 480 74.0
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 9.7e-200 700.7 570 65.1
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 9.7e-200 700.7 501 72.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 1.3e-199 700.3 566 65.4
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-199 700.3 578 64.5
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-199 700.3 578 64.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.3e-199 700.3 552 67.2
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 1.7e-199 699.9 575 64.5
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.7e-199 699.9 565 66.2
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 1.7e-199 699.9 563 65.9
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 3.7e-199 698.7 570 64.9
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 4.8e-199 698.4 570 64.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.8e-199 698.4 486 72.8
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 4.8e-199 698.4 472 75.4
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 1.4e-198 696.8 493 71.0
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.8e-198 696.4 522 67.8
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 1.8e-198 696.4 485 73.2
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 3.1e-198 695.7 470 75.1
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 5.3e-198 694.9 524 67.9
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 5.3e-198 694.9 486 71.4
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 7.0e-198 694.5 484 72.1
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 7.0e-198 694.5 491 71.9
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 7.0e-198 694.5 502 70.3
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.0e-198 694.5 476 74.4
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 7.0e-198 694.5 475 73.3
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 9.1e-198 694.1 467 75.2
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 9.1e-198 694.1 477 73.4
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.2e-197 693.7 486 72.2
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.2e-197 693.7 522 67.4
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 1.6e-197 693.3 470 74.3
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.6e-197 693.3 535 67.9
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.5e-197 692.2 526 66.9
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 3.5e-197 692.2 474 73.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 4.5e-197 691.8 484 71.7
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 5.9e-197 691.4 565 65.8
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 5.9e-197 691.4 474 72.4
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 7.7e-197 691.0 555 66.8
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 7.7e-197 691.0 484 71.9
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.0e-196 690.6 541 67.3
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 1.3e-196 690.3 519 68.4
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.2e-196 689.5 509 69.4
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.9e-196 689.1 475 74.3
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 2.9e-196 689.1 526 67.7
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 3.8e-196 688.7 505 69.5
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 5.0e-196 688.3 581 64.0
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 6.5e-196 688.0 472 74.2
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 6.5e-196 688.0 489 71.2
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 8.5e-196 687.6 511 69.9
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 8.5e-196 687.6 472 72.7
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.1e-195 687.2 486 71.2
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 1.1e-195 687.2 516 68.8
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 1.1e-195 687.2 523 68.3
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 1.1e-195 687.2 472 72.7
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 1.5e-195 686.8 484 71.7
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 1.5e-195 686.8 484 71.7
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 1.5e-195 686.8 470 73.0
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 1.9e-195 686.4 484 71.5
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 2.5e-195 686.0 472 73.1
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 4.2e-195 685.3 545 65.5
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.2e-194 683.7 525 66.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 1.6e-194 683.3 545 65.5
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.6e-194 683.3 545 65.5
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 1.6e-194 683.3 498 70.5
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 2.7e-194 682.6 571 64.1
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 3.6e-194 682.2 480 71.9
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 1.0e-193 680.6 523 68.3
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 1.4e-193 680.2 519 69.0
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 1.8e-193 679.9 571 64.8
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 3.0e-193 679.1 515 67.8
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 3.0e-193 679.1 557 65.5
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 5.2e-193 678.3 471 73.2
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 6.7e-193 677.9 488 71.5
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 2.6e-192 676.0 519 68.4
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 5.7e-192 674.9 500 70.0
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 7.5e-192 674.5 512 68.6
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 2.8e-191 672.5 509 67.6
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.7e-191 672.2 511 68.3
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 4.8e-191 671.8 454 74.0
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.8e-191 671.8 470 71.7
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.4e-190 669.5 470 71.5
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 9.1e-190 667.5 493 67.7
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.2e-189 667.2 531 66.1
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 5.9e-189 664.8 524 66.0
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 1.0e-188 664.1 510 68.8
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 2.2e-188 662.9 518 67.4
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 2.2e-188 662.9 462 72.7
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 5.0e-188 661.8 484 70.2
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 2.5e-187 659.4 516 67.1
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 3.0e-185 652.5 465 70.3
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.0e-185 652.1 505 66.9
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 7.5e-184 647.9 493 68.0
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 1.7e-180 636.7 488 67.0
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.5e-179 633.6 443 73.8
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 1.0e-177 627.5 418 75.8
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 2.0e-176 623.2 416 75.5
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.4e-174 616.3 422 74.2
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 7.0e-174 614.8 475 65.9
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 6.6e-172 608.2 416 73.8
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 3.2e-166 589.3 410 74.1
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 9.2e-166 587.8 675 50.7
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 5.6e-163 578.6 470 63.8
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 6.8e-161 571.6 536 58.8
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 8.9e-161 571.2 431 68.7
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 2.4e-158 563.1 417 69.8
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.3e-156 557.4 419 67.8
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 6.6e-156 555.1 419 67.5
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 6.2e-154 548.5 374 74.1
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.1e-153 547.7 418 66.0
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 3.7e-151 539.3 391 69.8
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 3.0e-148 529.6 389 68.9
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 3.6e-146 522.7 422 65.4
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 2.9e-135 486.5 463 57.0
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 2.3e-132 476.9 570 49.3
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 1.1e-123 448.0 485 54.4
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 6.2e-122 442.2 310 72.6
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 2.4e-121 440.3 440 56.4
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 4.0e-121 439.5 583 45.1
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 1.4e-118 431.0 348 62.9
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 5.6e-115 419.1 327 66.7
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 1.6e-114 417.5 298 70.8
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 7.9e-109 398.7 358 61.7
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 4.5e-104 382.9 282 68.8
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.2e-103 380.6 258 72.9
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 2.1e-101 374.0 253 74.3
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.6e-96 357.1 239 74.1
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.0e-76 292.0 213 70.0
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.2e-66 257.7 294 50.3
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 1.7e-63 248.1 186 67.2
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.6e-61 241.5 293 50.2
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 5.9e-56 223.0 196 58.2
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 5.9e-56 223.0 189 61.9
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 1.7e-55 221.5 517 33.3
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 7.5e-51 206.1 217 53.9
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 2.2e-50 204.5 141 73.8
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 1.9e-41 174.9 115 74.8
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 1.1e-33 149.1 116 65.5
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 6.6e-31 139.8 110 64.5
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 4.7e-29 133.7 109 67.9
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.1e-29 132.9 96 69.8
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 1.1e-28 132.5 88 71.6
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 4.6e-24 117.1 93 65.6
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 6.0e-24 116.7 131 52.7
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 3.9e-23 114.0 78 74.4
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 1.9e-22 111.7 69 75.4
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-21 109.0 94 62.8
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 3.0e-15 87.8 81 56.8
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.1e-13 81.6 61 63.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 2.1e-13 81.6 63 68.3
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 7.6e-11 73.2 148 33.8
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 3.8e-10 70.9 58 58.6
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 4.9e-10 70.5 43 76.7
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 2.4e-09 68.2 91 47.3
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 1.5e-06 58.9 35 85.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 4.3e-06 57.4 51 51.0


User provided reference genes

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