Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_2100 Physcomitrium patens HOM05D003221 ORTHO05D004432 6.2e-88 327.4 161 100.0
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.3e-50 203.4 178 64.0
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 4.5e-46 188.3 178 58.4
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 1.5e-38 163.3 168 54.8
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 4.5e-38 161.8 168 51.8
AagrBONN_evm.TU.Sc2ySwM_344.2231 Anthoceros agrestis HOM05D003221 ORTHO05D004432 5.8e-38 161.4 178 52.2
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 5.8e-38 161.4 167 53.9
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 1.0e-37 160.6 168 54.2
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 1.3e-37 160.2 168 54.2
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 4.9e-37 158.3 168 52.4
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 4.9e-37 158.3 168 53.6
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 8.4e-37 157.5 168 53.0
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 1.4e-36 156.8 168 52.4
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 1.9e-36 156.4 168 52.4
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 3.2e-36 155.6 178 48.9
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 4.2e-36 155.2 178 50.6
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 5.5e-36 154.8 168 51.8
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 7.1e-36 154.5 168 52.4
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 9.3e-36 154.1 168 50.6
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 9.3e-36 154.1 186 47.3
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 1.2e-35 153.7 168 52.4
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 1.2e-35 153.7 168 51.2
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 51.8
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 50.6
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 50.6
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 50.6
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 50.6
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 1.6e-35 153.3 168 50.6
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 2.1e-35 152.9 168 51.2
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.1e-35 152.9 168 50.6
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 2.1e-35 152.9 168 51.2
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 2.1e-35 152.9 168 50.0
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 2.7e-35 152.5 168 51.2
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 2.7e-35 152.5 168 50.6
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 3.5e-35 152.1 168 51.2
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 3.5e-35 152.1 168 51.2
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 4.6e-35 151.8 168 51.8
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 4.6e-35 151.8 168 52.4
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 6.0e-35 151.4 168 50.6
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 6.0e-35 151.4 168 50.6
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 6.0e-35 151.4 168 50.6
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 6.0e-35 151.4 168 50.6
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 6.0e-35 151.4 168 50.6
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 7.9e-35 151.0 168 50.6
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 7.9e-35 151.0 168 50.0
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 7.9e-35 151.0 168 50.6
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 7.9e-35 151.0 168 50.6
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.0e-34 150.6 167 49.7
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 1.0e-34 150.6 168 50.0
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 1.3e-34 150.2 168 50.0
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 1.3e-34 150.2 168 48.8
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 1.3e-34 150.2 168 50.6
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 1.3e-34 150.2 142 56.3
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 1.8e-34 149.8 168 51.8
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.8e-34 149.8 168 50.0
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.8e-34 149.8 168 50.0
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 1.8e-34 149.8 181 47.0
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 49.4
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 50.0
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 50.0
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 50.0
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 49.4
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 2.3e-34 149.4 167 49.1
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 2.3e-34 149.4 167 49.1
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 50.0
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 2.3e-34 149.4 168 50.0
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 3.0e-34 149.1 168 50.6
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 3.0e-34 149.1 168 50.6
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 3.9e-34 148.7 168 52.4
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 6.7e-34 147.9 168 49.4
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 8.7e-34 147.5 168 49.4
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.1e-33 147.1 178 46.1
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.1e-33 147.1 178 46.1
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 1.1e-33 147.1 181 45.9
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.5e-33 146.7 178 46.1
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 1.5e-33 146.7 181 45.3
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 1.9e-33 146.4 168 50.0
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 1.9e-33 146.4 168 50.0
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 1.9e-33 146.4 168 48.2
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 2.5e-33 146.0 168 49.4
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 2.5e-33 146.0 177 50.3
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 2.5e-33 146.0 168 48.2
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 3.3e-33 145.6 168 48.2
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 3.3e-33 145.6 168 49.4
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 3.3e-33 145.6 178 46.6
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 4.3e-33 145.2 168 48.8
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 5.7e-33 144.8 184 46.7
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 5.7e-33 144.8 168 47.6
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 9.7e-33 144.1 169 48.5
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 9.7e-33 144.1 168 48.8
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 1.6e-32 143.3 168 48.8
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 1.6e-32 143.3 168 48.8
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 2.2e-32 142.9 168 47.0
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 4.8e-32 141.7 168 48.2
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 6.3e-32 141.4 168 47.6
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.4e-31 140.2 178 44.4
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-31 140.2 178 44.4
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 1.4e-31 140.2 168 48.2
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 1.4e-31 140.2 168 47.6
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 1.4e-31 140.2 168 47.6
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 1.4e-31 140.2 168 47.6
Gohir.A12G188100 Gossypium hirsutum HOM05D003221 ORTHO05D004432 2.4e-31 139.4 178 44.9
CAN.G5443.1 Capsicum annuum HOM05D003221 ORTHO05D004432 4.1e-31 138.7 168 47.6
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 5.3e-31 138.3 168 45.2
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 5.3e-31 138.3 168 45.8
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 5.3e-31 138.3 168 45.8
Mapoly0014s0216 Marchantia polymorpha HOM05D003221 ORTHO05D004432 6.9e-31 137.9 189 46.6
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 2.0e-30 136.3 186 43.5
Zm00001eb246330 Zea mays HOM05D003221 ORTHO05D004432 2.6e-30 136.0 168 45.2
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 5.9e-30 134.8 186 41.9
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 1.3e-29 133.7 168 47.0
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 1.3e-29 133.7 168 45.8
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 1.7e-29 133.3 181 43.6
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 8.5e-29 131.0 168 45.2
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 2.5e-28 129.4 168 45.2
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 3.6e-27 125.6 168 45.2
QL05p040991 Quercus lobata HOM05D003221 ORTHO05D004432 3.6e-27 125.6 168 44.6
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 4.6e-27 125.2 181 40.9
SHI33980 Sapria himalayana HOM05D003221 ORTHO05D004432 2.3e-26 122.9 168 41.1
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 8.8e-26 120.9 168 42.9
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 1.1e-25 120.6 168 44.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 2.5e-25 119.4 135 50.4
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 2.5e-25 119.4 155 45.2
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 4.3e-25 118.6 168 42.3
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 9.7e-25 117.5 171 42.7
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 1.7e-24 116.7 168 41.1
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 2.8e-24 115.9 168 42.3
Actinidia25611 Actinidia chinensis HOM05D003221 ORTHO05D004432 3.7e-24 115.5 151 48.3
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 1.8e-23 113.2 168 42.3
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 5.3e-23 111.7 168 42.3
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 9.1e-23 110.9 168 41.1
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 1.5e-22 110.2 181 38.7
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 3.4e-22 109.0 168 39.3
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 4.5e-22 108.6 168 40.5
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 5.9e-22 108.2 154 41.6
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 1.0e-21 107.5 167 41.3
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 2.9e-21 105.9 172 41.3
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 1.1e-20 104.0 168 39.9
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 1.1e-20 104.0 168 39.9
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 1.1e-20 104.0 148 45.9
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 1.9e-20 103.2 167 40.1
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 3.2e-20 102.4 169 40.8
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 5.5e-20 101.7 168 39.3
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 9.4e-20 100.9 168 39.9
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 1.6e-19 100.1 175 35.4
CSS0008999 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 2.1e-19 99.8 109 51.4
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 1.4e-18 97.1 169 37.9
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 1.8e-18 96.7 168 37.5
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 3.9e-18 95.5 168 36.9
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 6.7e-18 94.7 168 36.9
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 2.0e-17 93.2 168 38.1
Oeu011575.1 Olea europaea HOM05D003221 ORTHO05D004432 2.6e-17 92.8 102 52.0
Zm00001eb079270 Zea mays HOM05D003221 ORTHO05D004432 4.4e-17 92.0 138 40.6
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 1.7e-16 90.1 101 52.5
COL.COLO4_22963 Corchorus olitorius HOM05D003221 ORTHO05D004432 2.8e-16 89.4 84 57.1
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis HOM05D003221 ORTHO05D004432 4.8e-16 88.6 48 83.3
MBI06_g05239_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 2.4e-15 86.3 48 77.1
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 5.3e-15 85.1 48 77.1
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 5.3e-15 85.1 48 77.1
Psat4g064960 Pisum sativum HOM05D003221 ORTHO05D004432 9.1e-15 84.3 48 77.1
Medtr8g464820 Medicago truncatula HOM05D003221 ORTHO05D004432 7.7e-14 81.3 48 75.0
CAN.G990.4 Capsicum annuum HOM05D003221 ORTHO05D004432 1.0e-13 80.9 48 75.0
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 1.9e-12 76.6 183 32.8
SEGI_29907 Sequoiadendron giganteum HOM05D003221 ORTHO05D016442 1.9e-12 76.6 68 51.5
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 4.2e-12 75.5 140 35.7
TAR626G0734 Trochodendron aralioides HOM05D003221 ORTHO05D004432 7.2e-12 74.7 44 72.7
CiPaw.11G011900 Carya illinoinensis HOM05D003221 ORTHO05D004432 9.4e-12 74.3 50 68.0
FvH4_5g07210 Fragaria vesca HOM05D003221 ORTHO05D029578 1.2e-11 73.9 43 72.1
MD06G1156100 Malus domestica HOM05D003221 ORTHO05D004432 3.6e-11 72.4 81 46.9
A09p13870 Brassica napus HOM05D003221 ORTHO05D016442 3.9e-10 68.9 68 51.5
Medtr8g046560 Medicago truncatula HOM05D003221 ORTHO05D004432 3.9e-10 68.9 94 46.8
HPP92_024650 Vanilla planifolia HOM05D003221 ORTHO05D016442 2.6e-09 66.2 68 50.0
CSS0004138 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 4.4e-09 65.5 48 62.5
PGSC0003DMG401024210 Solanum tuberosum HOM05D003221 ORTHO05D016442 7.4e-09 64.7 76 42.1
Psat0s5008g0040 Pisum sativum HOM05D003221 ORTHO05D016442 4.8e-08 62.0 67 43.3
CAN.G990.3 Capsicum annuum HOM05D003221 ORTHO05D016442 1.1e-07 60.8 67 44.8
QL10p005029 Quercus lobata HOM05D003221 ORTHO05D004432 1.4e-07 60.5 93 43.0
Oeu058314.2 Olea europaea HOM05D003221 ORTHO05D016442 1.8e-07 60.1 67 46.3
CSS0000758 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.1e-07 59.3 94 43.6
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 3.1e-07 59.3 44 54.5
CSS0000638 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.2e-06 57.4 167 32.3
CSS0035074 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.6e-06 57.0 100 41.0
CSS0006566 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 2.0e-06 56.6 100 42.0
MBI06_g43853_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 2.0e-06 56.6 105 41.0
Actinidia25612 Actinidia chinensis HOM05D003221 ORTHO05D016442 5.9e-06 55.1 68 45.6


User provided reference genes

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