Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.2e-235 817.4 428 100.0
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 5.1e-174 614.8 429 74.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.0e-105 387.9 301 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.1e-96 357.8 309 57.3
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 5.3e-94 349.0 350 52.9
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 1.4e-91 340.9 342 50.0
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.7e-89 334.0 343 50.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 2.3e-89 333.6 309 53.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 5.1e-89 332.4 308 53.6
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 5.1e-89 332.4 308 53.6
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 5.1e-89 332.4 316 51.9
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.6e-89 332.0 346 50.0
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 6.6e-89 332.0 308 53.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.3e-87 327.8 342 50.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.6e-87 327.4 348 49.7
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.1e-87 327.0 316 53.2
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 2.8e-87 326.6 344 49.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 3.6e-87 326.2 322 50.9
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.8e-87 325.9 316 50.6
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 8.1e-87 325.1 347 48.4
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 1.1e-86 324.7 348 48.6
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 4.0e-86 322.8 362 47.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 4.0e-86 322.8 349 49.6
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 6.9e-86 322.0 305 51.8
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 6.9e-86 322.0 319 50.8
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 9.0e-86 321.6 343 49.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.2e-85 321.2 309 50.5
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.2e-85 321.2 335 49.3
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.2e-85 321.2 346 46.8
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.5e-85 320.9 316 51.3
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 1.5e-85 320.9 341 48.4
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 1.5e-85 320.9 349 49.6
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 2.0e-85 320.5 315 51.1
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 2.6e-85 320.1 348 48.0
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.5e-85 319.3 357 46.5
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.8e-85 318.9 340 48.5
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 5.8e-85 318.9 339 48.1
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 9.9e-85 318.2 343 46.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.3e-84 317.8 356 46.9
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 2.2e-84 317.0 319 50.2
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.9e-84 316.6 335 49.0
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 4.9e-84 315.8 359 45.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 8.4e-84 315.1 335 48.1
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 8.4e-84 315.1 292 53.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.9e-83 313.9 356 46.3
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 4.2e-83 312.8 304 51.6
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 4.2e-83 312.8 371 44.5
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 7.1e-83 312.0 292 53.8
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-82 311.2 349 48.7
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 2.1e-82 310.5 330 49.4
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.1e-82 310.5 338 47.6
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 2.7e-82 310.1 341 48.7
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 3.5e-82 309.7 308 49.4
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 4.6e-82 309.3 315 49.2
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.0e-82 308.9 344 47.4
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 6.0e-82 308.9 315 49.2
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 1.3e-81 307.8 344 47.1
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 2.3e-81 307.0 357 48.2
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 2.3e-81 307.0 291 52.2
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-80 304.3 344 47.1
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 2.5e-80 303.5 291 50.5
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.5e-80 303.5 321 47.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.5e-80 303.5 348 45.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.5e-80 303.5 330 46.4
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.6e-80 302.4 281 52.7
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 5.6e-80 302.4 314 49.4
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 5.6e-80 302.4 316 48.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 7.4e-80 302.0 344 45.1
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 7.4e-80 302.0 338 46.7
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 7.4e-80 302.0 308 49.7
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.6e-79 300.8 341 45.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 2.8e-79 300.1 313 49.2
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 6.2e-79 298.9 308 48.4
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.2e-79 298.9 301 50.2
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 8.1e-79 298.5 337 46.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.1e-78 298.1 287 50.2
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-78 297.4 338 46.7
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.4e-78 297.0 337 46.0
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 2.4e-78 297.0 291 49.8
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 3.1e-78 296.6 338 46.4
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 9.0e-78 295.0 320 46.9
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 1.2e-77 294.7 366 43.2
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.0e-77 293.9 296 50.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 7.6e-77 292.0 291 48.5
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.7e-76 290.8 292 48.3
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.8e-76 289.7 298 48.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 6.4e-76 288.9 330 45.2
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 8.4e-76 288.5 343 44.6
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.1e-75 288.1 343 44.6
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-75 287.7 332 44.9
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.2e-75 286.6 346 43.6
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 7.1e-75 285.4 330 46.1
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 3.5e-74 283.1 288 47.6
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 7.9e-74 282.0 304 47.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 1.3e-73 281.2 357 44.8
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.3e-73 281.2 216 61.6
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.3e-73 281.2 344 44.5
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 8.7e-73 278.5 299 46.2
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.5e-72 277.7 316 45.3
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.9e-72 277.3 216 59.3
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 3.3e-72 276.6 265 52.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.3e-72 276.2 360 42.2
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 5.7e-72 275.8 324 44.8
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.4e-72 275.4 316 45.3
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.6e-71 274.2 337 44.5
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.1e-70 271.6 363 41.6
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-70 271.6 291 48.5
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-70 271.6 291 48.5
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 1.1e-70 271.6 291 48.5
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-70 271.6 291 48.5
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 1.1e-70 271.6 291 48.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 4.0e-70 269.6 327 42.5
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 6.9e-70 268.9 354 42.9
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.9e-70 268.9 337 44.8
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 1.2e-69 268.1 291 47.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 1.5e-69 267.7 394 39.3
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.5e-69 267.7 337 44.5
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-69 267.3 291 47.4
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.8e-69 265.8 348 42.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 5.8e-69 265.8 254 50.8
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.0e-68 265.0 291 48.1
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.0e-68 265.0 291 48.1
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.3e-68 264.6 291 48.1
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.7e-68 264.2 365 40.5
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 2.9e-68 263.5 291 48.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 6.5e-68 262.3 291 47.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.2e-67 259.6 270 48.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 7.1e-67 258.8 288 45.8
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 3.5e-66 256.5 341 42.2
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-65 254.2 227 55.9
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 5.1e-65 252.7 435 34.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-64 251.5 290 46.6
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.5e-64 251.1 285 44.9
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 1.5e-64 251.1 273 48.0
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 2.5e-64 250.4 277 47.3
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 9.7e-64 248.4 309 43.7
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 2.2e-63 247.3 223 52.0
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 1.0e-60 238.4 345 37.7
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 1.4e-59 234.6 315 40.3
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.5e-59 233.8 330 41.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 8.2e-55 218.8 270 45.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 4.1e-54 216.5 309 41.7
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 5.9e-53 212.6 180 55.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.3e-49 200.7 254 44.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-47 194.9 346 35.3
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.8e-46 191.0 134 67.2
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-43 181.4 355 36.1
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 1.0e-41 175.3 243 38.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 3.9e-41 173.3 259 39.4
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 4.1e-38 163.3 227 40.1
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 7.2e-35 152.5 190 40.0
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 3.8e-28 130.2 172 40.7
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.9e-27 127.9 95 58.9
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 5.0e-20 103.2 73 65.8
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 4.2e-19 100.1 175 40.0
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.4e-17 95.1 76 53.9
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 2.4e-14 84.3 314 24.5
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 1.6e-13 81.6 158 35.4
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 8.6e-12 75.9 176 33.5
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 9.5e-11 72.4 60 56.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 1.1e-06 58.9 55 43.6
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 9.2e-06 55.8 72 40.3


User provided reference genes

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