Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_19440 Physcomitrium patens HOM05D019520 ORTHO05D000172 2.1e-208 728.8 367 100.0
SMO358G0538 Selaginella moellendorffii HOM05D000292 ORTHO05D000172 4.8e-11 73.2 85 49.4
Pp3c4_19430 Physcomitrium patens HOM05D019520 ORTHO05D000172 1.4e-10 71.6 186 29.6
Mapoly0102s0042 Marchantia polymorpha HOM05D019520 ORTHO05D000172 2.0e-09 67.8 155 31.6
Medtr7g063920 Medicago truncatula HOM05D000292 ORTHO05D000172 4.5e-09 66.6 194 24.7
CSS0007252 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 7.6e-09 65.9 145 29.0
Rhsim03G0139200 Rhododendron simsii HOM05D000292 ORTHO05D000172 9.9e-09 65.5 83 38.6
SMO172G0091 Selaginella moellendorffii HOM05D019520 ORTHO05D000172 9.9e-09 65.5 125 33.6
AagrBONN_evm.TU.Sc2ySwM_344.847 Anthoceros agrestis HOM05D063874 ORTHO05D000172 1.3e-08 65.1 125 34.4
DCAR_015220 Daucus carota HOM05D000292 ORTHO05D000172 1.3e-08 65.1 158 29.1
Glyma.18G194800 Glycine max HOM05D000292 ORTHO05D000172 1.3e-08 65.1 144 29.2
TAR636G0285 Trochodendron aralioides HOM05D000292 ORTHO05D000172 2.2e-08 64.3 94 34.0
TAR636G2800 Trochodendron aralioides HOM05D000292 ORTHO05D000172 2.2e-08 64.3 94 34.0
Pp3c10_17660 Physcomitrium patens HOM05D019520 ORTHO05D000172 2.9e-08 63.9 156 28.2
Hma1.2p1_1409F.1_g281575 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 3.8e-08 63.5 113 35.4
Hma1.2p1_1970F.1_g309570 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 3.8e-08 63.5 113 35.4
Psat4g099760 Pisum sativum HOM05D000292 ORTHO05D000172 3.8e-08 63.5 89 33.7
TPR.G34874 Trifolium pratense HOM05D000292 ORTHO05D000172 3.8e-08 63.5 82 36.6
VMungo0720G0457 Vigna mungo HOM05D000292 ORTHO05D000172 3.8e-08 63.5 126 28.6
AagrBONN_evm.TU.Sc2ySwM_368.1271 Anthoceros agrestis HOM05D000292 ORTHO05D038389 4.9e-08 63.2 199 30.2
AagrBONN_evm.TU.Sc2ySwM_344.1017 Anthoceros agrestis HOM05D000292 ORTHO05D000172 6.4e-08 62.8 87 39.1
VMungo1383G3045 Vigna mungo HOM05D000292 ORTHO05D000172 6.4e-08 62.8 91 30.8
Glyma.18G194600 Glycine max HOM05D000292 ORTHO05D000172 8.4e-08 62.4 143 28.0
Os01g0153600 Oryza sativa ssp. japonica HOM05D000292 ORTHO05D000172 8.4e-08 62.4 66 42.4
TPR.G18528 Trifolium pratense HOM05D000292 ORTHO05D000172 8.4e-08 62.4 72 37.5
TPR.G34879 Trifolium pratense HOM05D000292 ORTHO05D000172 8.4e-08 62.4 72 37.5
TPR.G16333 Trifolium pratense HOM05D000292 ORTHO05D000172 1.1e-07 62.0 71 35.2
AagrBONN_evm.TU.Sc2ySwM_117.2604 Anthoceros agrestis HOM05D019520 ORTHO05D000172 1.4e-07 61.6 56 46.4
Medtr7g063900 Medicago truncatula HOM05D000292 ORTHO05D000172 1.4e-07 61.6 85 34.1
Prupe.6G064000 Prunus persica HOM05D000292 ORTHO05D000172 1.4e-07 61.6 95 37.9
VMungo1383G1253 Vigna mungo HOM05D000292 ORTHO05D000172 1.4e-07 61.6 214 22.9
SMO171G0113 Selaginella moellendorffii HOM05D000292 ORTHO05D000172 1.9e-07 61.2 127 29.1
TPR.G16319 Trifolium pratense HOM05D000292 ORTHO05D000172 1.9e-07 61.2 147 24.5
Dinv16987 Davidia involucrata HOM05D000292 ORTHO05D000172 2.4e-07 60.8 73 41.1
Dinv42936 Davidia involucrata HOM05D000292 ORTHO05D000172 2.4e-07 60.8 73 41.1
Dinv43164 Davidia involucrata HOM05D000292 ORTHO05D000172 2.4e-07 60.8 73 41.1
Psat3g133240 Pisum sativum HOM05D000292 ORTHO05D000172 2.4e-07 60.8 130 24.6
Psat4g099720 Pisum sativum HOM05D000292 ORTHO05D000172 2.4e-07 60.8 91 35.2
Psat5g041040 Pisum sativum HOM05D000292 ORTHO05D000172 2.4e-07 60.8 91 35.2
TPR.G34864 Trifolium pratense HOM05D000292 ORTHO05D000172 2.4e-07 60.8 205 22.4
TPR.G35785 Trifolium pratense HOM05D000292 ORTHO05D000172 2.4e-07 60.8 90 30.0
CSS0021970 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 3.2e-07 60.5 135 24.4
DCAR_015219 Daucus carota HOM05D000292 ORTHO05D000172 3.2e-07 60.5 130 29.2
Phvul.008G110800 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 3.2e-07 60.5 70 34.3
Psat0s3131g0080 Pisum sativum HOM05D000292 ORTHO05D000172 3.2e-07 60.5 70 35.7
SMO118G0120 Selaginella moellendorffii HOM05D000292 ORTHO05D000172 3.2e-07 60.5 76 38.2
SEGI_11796 Sequoiadendron giganteum HOM05D000292 ORTHO05D000172 3.2e-07 60.5 81 35.8
TAR636G2797 Trochodendron aralioides HOM05D000292 ORTHO05D000172 3.2e-07 60.5 86 33.7
Psat3g147880 Pisum sativum HOM05D000292 ORTHO05D000172 4.2e-07 60.1 72 36.1
VMungo0464G0059 Vigna mungo HOM05D000292 ORTHO05D000172 4.2e-07 60.1 73 34.2
Actinidia39005 Actinidia chinensis HOM05D000292 ORTHO05D000172 5.5e-07 59.7 135 28.1
ECA233G3990 Erigeron canadensis HOM05D000292 ORTHO05D000172 5.5e-07 59.7 132 28.8
Hma1.2p1_0710F.1_g207430 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 5.5e-07 59.7 68 42.6
Medtr7g066490 Medicago truncatula HOM05D000292 ORTHO05D000172 5.5e-07 59.7 75 36.0
Phvul.008G110200 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 5.5e-07 59.7 73 35.6
SHI13488 Sapria himalayana HOM05D000292 ORTHO05D000172 5.5e-07 59.7 74 40.5
TAR636G2636 Trochodendron aralioides HOM05D000292 ORTHO05D000172 5.5e-07 59.7 94 33.0
Ca_07039_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 7.1e-07 59.3 88 31.8
Dinv34322 Davidia involucrata HOM05D000292 ORTHO05D000172 7.1e-07 59.3 96 38.5
FvH4_6g48430 Fragaria vesca HOM05D000292 ORTHO05D000172 7.1e-07 59.3 85 30.6
Lj3g0027479 Lotus japonicus HOM05D000292 ORTHO05D000172 7.1e-07 59.3 84 35.7
Medtr7g063660 Medicago truncatula HOM05D000292 ORTHO05D000172 7.1e-07 59.3 92 32.6
Medtr7g063830 Medicago truncatula HOM05D000292 ORTHO05D000172 7.1e-07 59.3 73 34.2
Medtr7g066410 Medicago truncatula HOM05D000292 ORTHO05D000172 7.1e-07 59.3 73 37.0
Phvul.008G110100 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 7.1e-07 59.3 127 28.3
Psat0s3131g0040 Pisum sativum HOM05D000292 ORTHO05D000172 7.1e-07 59.3 112 30.4
SMO330G0054 Selaginella moellendorffii HOM05D000292 ORTHO05D000172 7.1e-07 59.3 82 36.6
SEGI_26972 Sequoiadendron giganteum HOM05D000292 ORTHO05D000172 7.1e-07 59.3 81 35.8
TPR.G16347 Trifolium pratense HOM05D000292 ORTHO05D000172 7.1e-07 59.3 84 31.0
CSS0014923 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 9.3e-07 58.9 185 25.9
Lj1g0016229 Lotus japonicus HOM05D000292 ORTHO05D000172 9.3e-07 58.9 84 33.3
Phvul.008G110500 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 9.3e-07 58.9 71 35.2
Prupe.6G064300 Prunus persica HOM05D000292 ORTHO05D000172 9.3e-07 58.9 100 31.0
CANSAT78G2067 Cannabis sativa HOM05D000292 ORTHO05D000172 1.2e-06 58.5 126 32.5
Lj8C90T3 Lonicera japonica HOM05D000292 ORTHO05D000172 1.2e-06 58.5 93 33.3
Medtr7g063880 Medicago truncatula HOM05D000292 ORTHO05D000172 1.2e-06 58.5 86 34.9
RcHm_v2.0_Chr5g0067841 Rosa chinensis HOM05D000292 ORTHO05D000172 1.2e-06 58.5 85 31.8
RcHm_v2.0_Chr5g0067891 Rosa chinensis HOM05D000292 ORTHO05D000172 1.2e-06 58.5 84 32.1
Actinidia37210 Actinidia chinensis HOM05D000292 ORTHO05D000172 1.6e-06 58.2 115 29.6
Duzib168G0276 Durio zibethinus HOM05D000292 ORTHO05D000172 1.6e-06 58.2 77 40.3
Lalb_Chr03g0042891 Lupinus albus HOM05D000292 ORTHO05D000172 1.6e-06 58.2 71 29.6
RcHm_v2.0_Chr5g0067691 Rosa chinensis HOM05D000292 ORTHO05D000172 1.6e-06 58.2 84 32.1
TPR.G16339 Trifolium pratense HOM05D000292 ORTHO05D000172 1.6e-06 58.2 90 31.1
TPR.G34876 Trifolium pratense HOM05D000292 ORTHO05D000172 1.6e-06 58.2 115 28.7
CiPaw.14G069300 Carya illinoinensis HOM05D000292 ORTHO05D000172 2.1e-06 57.8 89 37.1
COL.COLO4_10946 Corchorus olitorius HOM05D000292 ORTHO05D000172 2.1e-06 57.8 88 40.9
FvH4_7g21610 Fragaria vesca HOM05D000292 ORTHO05D000172 2.1e-06 57.8 74 37.8
FAN10G0906 Fragaria x ananassa HOM05D000292 ORTHO05D000172 2.1e-06 57.8 68 38.2
Manes.10G038100 Manihot esculenta HOM05D000292 ORTHO05D000172 2.1e-06 57.8 96 36.5
Medtr7g012680 Medicago truncatula HOM05D000292 ORTHO05D000172 2.1e-06 57.8 84 32.1
RcHm_v2.0_Chr3g0490491 Rosa chinensis HOM05D000292 ORTHO05D000172 2.1e-06 57.8 84 32.1
RcHm_v2.0_Chr5g0067411 Rosa chinensis HOM05D000292 ORTHO05D000172 2.1e-06 57.8 71 32.4
RcHm_v2.0_Chr5g0067491 Rosa chinensis HOM05D000292 ORTHO05D000172 2.1e-06 57.8 71 32.4
TPR.G15602 Trifolium pratense HOM05D000292 ORTHO05D000172 2.1e-06 57.8 71 32.4
TPR.G29509 Trifolium pratense HOM05D000292 ORTHO05D000172 2.1e-06 57.8 71 32.4
COL.COLO4_19078 Corchorus olitorius HOM05D000292 ORTHO05D000172 2.7e-06 57.4 85 38.8
Dinv20936 Davidia involucrata HOM05D000292 ORTHO05D000172 2.7e-06 57.4 134 29.1
Dinv21007 Davidia involucrata HOM05D000292 ORTHO05D000172 2.7e-06 57.4 134 29.1
FvH4_7g21310 Fragaria vesca HOM05D000292 ORTHO05D000172 2.7e-06 57.4 74 37.8
FAN21G0995 Fragaria x ananassa HOM05D000292 ORTHO05D000172 2.7e-06 57.4 85 29.4
HanXRQChr12g0370581 Helianthus annuus HOM05D000292 ORTHO05D000172 2.7e-06 57.4 84 36.9
Lj8C89T9 Lonicera japonica HOM05D000292 ORTHO05D000172 2.7e-06 57.4 86 34.9
Lj3g0008222 Lotus japonicus HOM05D000292 ORTHO05D000172 2.7e-06 57.4 83 36.1
Lalb_Chr03g0042911 Lupinus albus HOM05D000292 ORTHO05D000172 2.7e-06 57.4 71 29.6
Thecc.09G308800 Theobroma cacao HOM05D000292 ORTHO05D000172 2.7e-06 57.4 156 25.0
TPR.G18393 Trifolium pratense HOM05D000292 ORTHO05D000172 2.7e-06 57.4 85 35.3
AagrBONN_evm.TU.Sc2ySwM_362.1980 Anthoceros agrestis HOM05D022237 ORTHO05D000172 3.5e-06 57.0 70 40.0
AL6G11090 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.5e-06 57.0 85 30.6
CiPaw.14G081700 Carya illinoinensis HOM05D000292 ORTHO05D000172 3.5e-06 57.0 67 41.8
Ca_07038_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 3.5e-06 57.0 71 33.8
Ca_09161_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 3.5e-06 57.0 79 35.4
COL.COLO4_14884 Corchorus olitorius HOM05D000292 ORTHO05D000172 3.5e-06 57.0 212 26.9
Dinv17079 Davidia involucrata HOM05D000292 ORTHO05D000172 3.5e-06 57.0 134 28.4
Dinv43023 Davidia involucrata HOM05D000292 ORTHO05D000172 3.5e-06 57.0 134 28.4
Dinv43075 Davidia involucrata HOM05D000292 ORTHO05D000172 3.5e-06 57.0 134 28.4
Eucgr.J00056 Eucalyptus grandis HOM05D000292 ORTHO05D000172 3.5e-06 57.0 88 37.5
FAN03G0479 Fragaria x ananassa HOM05D001370 ORTHO05D002518 3.5e-06 57.0 68 39.7
RcHm_v2.0_Chr1g0365721 Rosa chinensis HOM05D000292 ORTHO05D000172 3.5e-06 57.0 80 36.2
RcHm_v2.0_Chr5g0055481 Rosa chinensis HOM05D000292 ORTHO05D000172 3.5e-06 57.0 84 32.1
CiPaw.14G069200 Carya illinoinensis HOM05D000292 ORTHO05D000172 4.6e-06 56.6 67 43.3
Ca_20099_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 4.6e-06 56.6 85 35.3
DCAR_015216 Daucus carota HOM05D000292 ORTHO05D000172 4.6e-06 56.6 76 36.8
Gohir.D10G219964 Gossypium hirsutum HOM05D000292 ORTHO05D000172 4.6e-06 56.6 86 37.2
Lj8C89T11 Lonicera japonica HOM05D000292 ORTHO05D000172 4.6e-06 56.6 86 34.9
Medtr7g062280 Medicago truncatula HOM05D000292 ORTHO05D000172 4.6e-06 56.6 84 32.1
Medtr7g066480 Medicago truncatula HOM05D000292 ORTHO05D000172 4.6e-06 56.6 69 34.8
Medtr7g066570 Medicago truncatula HOM05D000292 ORTHO05D000172 4.6e-06 56.6 96 29.2
Psat7g244440 Pisum sativum HOM05D000292 ORTHO05D000172 4.6e-06 56.6 89 30.3
Rhsim09G0162500 Rhododendron simsii HOM05D000292 ORTHO05D000172 4.6e-06 56.6 118 31.4
SMO222G0012 Selaginella moellendorffii HOM05D000292 ORTHO05D000172 4.6e-06 56.6 101 36.6
Thecc.09G308900 Theobroma cacao HOM05D000292 ORTHO05D000172 4.6e-06 56.6 96 38.5
AagrBONN_evm.TU.Sc2ySwM_117.351 Anthoceros agrestis HOM05D000292 ORTHO05D000172 6.0e-06 56.2 121 25.6
CiPaw.02G180500 Carya illinoinensis HOM05D000292 ORTHO05D000172 6.0e-06 56.2 101 36.6
Migut.N02553 Erythranthe guttata HOM05D000292 ORTHO05D000172 6.0e-06 56.2 88 36.4
Gohir.A10G212000 Gossypium hirsutum HOM05D000292 ORTHO05D000172 6.0e-06 56.2 66 39.4
MD11G1083300 Malus domestica HOM05D000292 ORTHO05D000172 6.0e-06 56.2 87 39.1
Medtr4g017830 Medicago truncatula HOM05D000292 ORTHO05D000172 6.0e-06 56.2 81 38.3
Medtr7g063820 Medicago truncatula HOM05D000292 ORTHO05D000172 6.0e-06 56.2 85 34.1
Phvul.008G110600 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 6.0e-06 56.2 65 33.8
Phvul.008G110700 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 6.0e-06 56.2 65 33.8
Potri.010G210800 Populus trichocarpa HOM05D000292 ORTHO05D000172 6.0e-06 56.2 131 32.1
Rhsim09G0159500 Rhododendron simsii HOM05D000292 ORTHO05D000172 6.0e-06 56.2 92 34.8
SalBow7G1680 Salvia bowleyana HOM05D000292 ORTHO05D000172 6.0e-06 56.2 123 26.8
SalBow7G4257 Salvia bowleyana HOM05D000292 ORTHO05D000172 6.0e-06 56.2 71 35.2
TPR.G18392 Trifolium pratense HOM05D000292 ORTHO05D000172 6.0e-06 56.2 81 37.0
TPR.G8199 Trifolium pratense HOM05D000292 ORTHO05D000172 6.0e-06 56.2 85 34.1
TAR629G0505 Trochodendron aralioides HOM05D000292 ORTHO05D000172 6.0e-06 56.2 79 32.9
VMungo0331G0650 Vigna mungo HOM05D000292 ORTHO05D000172 6.0e-06 56.2 131 25.2
AagrBONN_evm.TU.Sc2ySwM_368.1270 Anthoceros agrestis HOM05D000292 ORTHO05D000172 7.9e-06 55.8 66 40.9
AagrBONN_evm.TU.Sc2ySwM_368.1272 Anthoceros agrestis HOM05D000292 ORTHO05D000172 7.9e-06 55.8 64 43.8
arahy.Tifrunner.gnm1.ann1.L6Q662 Arachis hypogaea HOM05D000292 ORTHO05D000172 7.9e-06 55.8 87 34.5
arahy.Tifrunner.gnm1.ann1.ZC3BE2 Arachis hypogaea HOM05D000292 ORTHO05D000172 7.9e-06 55.8 69 36.2
COL.COLO4_10953 Corchorus olitorius HOM05D000292 ORTHO05D000172 7.9e-06 55.8 112 34.8
DCAR_015218 Daucus carota HOM05D000292 ORTHO05D000172 7.9e-06 55.8 76 34.2
Duzib170G0100 Durio zibethinus HOM05D000292 ORTHO05D000172 7.9e-06 55.8 94 34.0
Eucgr.J00057 Eucalyptus grandis HOM05D000292 ORTHO05D000172 7.9e-06 55.8 68 36.8
Gohir.D10G220000 Gossypium hirsutum HOM05D000292 ORTHO05D000172 7.9e-06 55.8 66 39.4
HanXRQChr12g0370571 Helianthus annuus HOM05D000292 ORTHO05D000172 7.9e-06 55.8 84 36.9
MD03G1079700 Malus domestica HOM05D000292 ORTHO05D000172 7.9e-06 55.8 101 36.6
Medtr1g014060 Medicago truncatula HOM05D000292 ORTHO05D000172 7.9e-06 55.8 58 39.7
Medtr3g007740 Medicago truncatula HOM05D000292 ORTHO05D000172 7.9e-06 55.8 90 26.7
Medtr7g058700 Medicago truncatula HOM05D000834 ORTHO05D000909 7.9e-06 55.8 72 37.5
Prupe.6G063700 Prunus persica HOM05D000292 ORTHO05D000172 7.9e-06 55.8 102 32.4
Rhsim09G0158900 Rhododendron simsii HOM05D000292 ORTHO05D000172 7.9e-06 55.8 92 33.7
Rhsim11G0123400 Rhododendron simsii HOM05D000292 ORTHO05D000172 7.9e-06 55.8 136 27.9
SEGI_17194 Sequoiadendron giganteum HOM05D000292 ORTHO05D000172 7.9e-06 55.8 81 34.6
TPR.G34863 Trifolium pratense HOM05D000292 ORTHO05D000172 7.9e-06 55.8 73 34.2
TPR.G9003 Trifolium pratense HOM05D000292 ORTHO05D000172 7.9e-06 55.8 130 27.7


User provided reference genes

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