Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_19160 Physcomitrium patens HOM05D004070 ORTHO05D004904 0.0e+00 1232.2 597 100.0
Aqoxy1G01303 Aquilegia oxysepala HOM05D004070 ORTHO05D004904 1.4e-100 371.3 564 35.1
PSO349G0044 Papaver somniferum HOM05D004070 ORTHO05D004904 2.4e-100 370.5 570 37.0
PSO765G0033 Papaver somniferum HOM05D004070 ORTHO05D004904 3.4e-99 366.7 561 37.8
Lj8A62T48 Lonicera japonica HOM05D004070 ORTHO05D004904 4.4e-99 366.3 565 36.6
DCAR_011846 Daucus carota HOM05D004070 ORTHO05D004904 2.4e-97 360.5 569 36.2
vmacro06948 Vaccinium macrocarpon HOM05D004070 ORTHO05D004904 7.1e-97 359.0 571 35.9
Lj1A961T78 Lonicera japonica HOM05D004070 ORTHO05D004904 9.2e-97 358.6 563 36.9
GSVIVG01032751001 Vitis vinifera HOM05D004070 ORTHO05D004904 1.2e-96 358.2 577 37.3
MD01G1158000 Malus domestica HOM05D004070 ORTHO05D004904 1.6e-96 357.8 568 36.6
Manes.10G008700 Manihot esculenta HOM05D004070 ORTHO05D004904 4.6e-96 356.3 564 35.8
Thecc.10G010900 Theobroma cacao HOM05D004070 ORTHO05D004904 6.0e-96 355.9 563 35.7
Potri.010G184200 Populus trichocarpa HOM05D004070 ORTHO05D004904 2.3e-95 354.0 593 36.6
TWI73G0078 Tripterygium wilfordii HOM05D004070 ORTHO05D004904 2.3e-95 354.0 583 35.5
TAR623G0471 Trochodendron aralioides HOM05D004070 ORTHO05D004904 3.9e-95 353.2 573 35.6
Peaxi162Scf00284g00526 Petunia axillaris HOM05D004070 ORTHO05D004904 6.6e-95 352.4 586 35.7
Rhsim03G0147100 Rhododendron simsii HOM05D004070 ORTHO05D004904 6.6e-95 352.4 586 35.8
RcHm_v2.0_Chr1g0370971 Rosa chinensis HOM05D004070 ORTHO05D004904 1.1e-94 351.7 564 36.9
Prupe.2G256300 Prunus persica HOM05D004070 ORTHO05D004904 1.5e-94 351.3 568 35.7
Nitab4.5_0003710g0040 Nicotiana tabacum HOM05D004070 ORTHO05D004904 1.9e-94 350.9 599 35.1
Duzib128G0764 Durio zibethinus HOM05D004070 ORTHO05D004904 4.3e-94 349.7 555 35.9
Sp3g09370 Schrenkiella parvula HOM05D004070 ORTHO05D004904 4.3e-94 349.7 558 37.1
Eucgr.J00174 Eucalyptus grandis HOM05D004070 ORTHO05D004904 5.6e-94 349.4 594 35.5
Nitab4.5_0000058g0090 Nicotiana tabacum HOM05D004070 ORTHO05D004904 5.6e-94 349.4 578 35.8
Gohir.A05G332000 Gossypium hirsutum HOM05D004070 ORTHO05D004904 9.6e-94 348.6 568 35.0
Os05g0346500 Oryza sativa ssp. japonica HOM05D004070 ORTHO05D004904 1.2e-93 348.2 562 37.0
BraA03t09594Z Brassica rapa HOM05D004070 ORTHO05D004904 1.6e-93 347.8 555 36.4
MD07G1226700 Malus domestica HOM05D004070 ORTHO05D004904 1.6e-93 347.8 577 36.2
C03p02630 Brassica napus HOM05D004070 ORTHO05D004904 2.1e-93 347.4 557 36.3
Phvul.001G245900 Phaseolus vulgaris HOM05D004070 ORTHO05D004904 2.1e-93 347.4 590 35.4
BcaB01g05761 Brassica carinata HOM05D004070 ORTHO05D004904 3.6e-93 346.7 564 36.5
FvH4_7g25120 Fragaria vesca HOM05D004070 ORTHO05D004904 4.7e-93 346.3 561 36.2
Glyma.18G024300 Glycine max HOM05D004070 ORTHO05D004904 6.2e-93 345.9 562 37.0
Psat5g130680 Pisum sativum HOM05D004070 ORTHO05D004904 6.2e-93 345.9 565 35.4
A03p02310 Brassica napus HOM05D004070 ORTHO05D004904 8.1e-93 345.5 557 35.9
AUR62022946 Chenopodium quinoa HOM05D004070 ORTHO05D004904 8.1e-93 345.5 567 36.0
QL08p063798 Quercus lobata HOM05D004070 ORTHO05D004904 1.1e-92 345.1 556 35.8
Carub.0003s1033 Capsella rubella HOM05D004070 ORTHO05D004904 1.8e-92 344.4 568 34.9
BcaB01g05950 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-92 343.6 557 35.7
BcaB04g21158 Brassica carinata HOM05D004070 ORTHO05D004904 3.1e-92 343.6 570 36.3
BolC3t12817H Brassica oleracea HOM05D004070 ORTHO05D004904 3.1e-92 343.6 557 35.7
SalBow3G0248 Salvia bowleyana HOM05D004070 ORTHO05D004904 3.1e-92 343.6 562 35.4
Gorai.012G079500 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.0e-92 343.2 570 34.7
TPR.G27736 Trifolium pratense HOM05D004070 ORTHO05D004904 4.0e-92 343.2 565 35.8
VMungo0647G1128 Vigna mungo HOM05D004070 ORTHO05D004904 5.2e-92 342.8 568 35.6
Ca_15154_v3 Cicer arietinum L. HOM05D004070 ORTHO05D004904 6.9e-92 342.4 553 35.3
Sabra10G0141400 Salix brachista HOM05D004070 ORTHO05D004904 9.0e-92 342.0 595 35.6
Thhalv10012879m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 1.2e-91 341.7 565 35.6
Glyma.11G232700 Glycine max HOM05D004070 ORTHO05D004904 1.2e-91 341.7 560 35.2
Sp6g37380 Schrenkiella parvula HOM05D004070 ORTHO05D004904 1.2e-91 341.7 566 35.5
CARHR085620 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.6e-91 340.5 563 36.4
Lsat_1_v5_gn_2_125521 Lactuca sativa HOM05D004070 ORTHO05D004904 3.4e-91 340.1 570 36.8
SEGI_36115 Sequoiadendron giganteum HOM05D004070 ORTHO05D004904 3.4e-91 340.1 596 34.6
Migut.F00635 Erythranthe guttata HOM05D004070 ORTHO05D004904 4.4e-91 339.7 564 36.0
VMungo1383G0354 Vigna mungo HOM05D004070 ORTHO05D004904 5.8e-91 339.3 595 35.1
Cc02_g06030 Coffea canephora HOM05D004070 ORTHO05D004904 7.6e-91 339.0 562 36.5
SalBow3G2100 Salvia bowleyana HOM05D004070 ORTHO05D004904 7.6e-91 339.0 562 35.1
CAN.G19.7 Capsicum annuum HOM05D004070 ORTHO05D004904 9.9e-91 338.6 573 36.3
Medtr3g071610 Medicago truncatula HOM05D004070 ORTHO05D004904 9.9e-91 338.6 570 35.1
Atru.chr12.102 Acer truncatum HOM05D004070 ORTHO05D004904 1.7e-90 337.8 567 34.6
ECA238G2061 Erigeron canadensis HOM05D004070 ORTHO05D004904 2.2e-90 337.4 573 34.6
CARHR207790 Cardamine hirsuta HOM05D004070 ORTHO05D004904 2.9e-90 337.0 564 34.9
AUR62012305 Chenopodium quinoa HOM05D004070 ORTHO05D004904 2.9e-90 337.0 567 36.0
Solyc06g050930.3 Solanum lycopersicum HOM05D004070 ORTHO05D004904 2.9e-90 337.0 595 35.3
BolC1t05338H Brassica oleracea HOM05D004070 ORTHO05D004904 3.8e-90 336.7 586 35.2
AT3G11040 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 4.9e-90 336.3 555 35.1
Sopen06g016660 Solanum pennellii HOM05D004070 ORTHO05D004904 8.4e-90 335.5 595 35.5
Dinv10587 Davidia involucrata HOM05D004070 ORTHO05D004904 1.1e-89 335.1 569 35.3
FAN03G3092 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.1e-89 335.1 572 34.4
PGR044G0681 Punica granatum HOM05D004070 ORTHO05D004904 1.1e-89 335.1 563 35.7
Lalb_Chr08g0231511 Lupinus albus HOM05D004070 ORTHO05D004904 1.4e-89 334.7 564 33.0
Aa31LG3G4060 Aethionema arabicum HOM05D004070 ORTHO05D004904 2.4e-89 334.0 565 35.8
EL10Ac2g04896 Beta vulgaris HOM05D004070 ORTHO05D004904 2.4e-89 334.0 559 35.2
Duzib106G0498 Durio zibethinus HOM05D004070 ORTHO05D004904 2.4e-89 334.0 559 35.1
Carub.0006s0436 Capsella rubella HOM05D004070 ORTHO05D004904 3.2e-89 333.6 570 35.8
CDE06G0669 Ceratophyllum demersum HOM05D004070 ORTHO05D004904 5.4e-89 332.8 543 35.7
Oeu043174.1 Olea europaea HOM05D004070 ORTHO05D004904 5.4e-89 332.8 600 33.2
AL6G15350 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 7.1e-89 332.4 567 35.1
Ah.16g103890 Amaranthus hybridus HOM05D004070 ORTHO05D004904 1.6e-88 331.3 569 36.2
THA.LOC104816686 Tarenaya hassleriana HOM05D004070 ORTHO05D004904 2.7e-88 330.5 357 44.5
MSTRG.8925 Avicennia marina HOM05D004070 ORTHO05D004904 4.6e-88 329.7 564 34.6
CiPaw.12G018900 Carya illinoinensis HOM05D004070 ORTHO05D004904 4.6e-88 329.7 553 35.6
AT5G05460 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 6.0e-88 329.3 571 34.9
BcaC09g48150 Brassica carinata HOM05D004070 ORTHO05D004904 6.0e-88 329.3 404 41.1
SGA_v2.0_scaffold60G20962 Striga asiatica HOM05D004070 ORTHO05D004904 6.0e-88 329.3 567 34.2
CiPaw.02G195800 Carya illinoinensis HOM05D004070 ORTHO05D004904 7.8e-88 328.9 553 35.4
CANSAT56G1738 Cannabis sativa HOM05D004070 ORTHO05D004904 1.0e-87 328.6 562 35.4
Gohir.D04G070700 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.0e-87 327.0 564 33.9
Thhalv10020200m.g Eutrema salsugineum HOM05D004070 ORTHO05D004904 8.7e-87 325.5 399 41.9
AagrBONN_evm.TU.Sc2ySwM_362.570 Anthoceros agrestis HOM05D004070 ORTHO05D004904 1.5e-86 324.7 529 36.5
ATR0174G011 Amborella trichopoda HOM05D004070 ORTHO05D004904 1.9e-86 324.3 572 35.5
Rhsim03G0146900 Rhododendron simsii HOM05D004070 ORTHO05D004904 1.9e-86 324.3 606 34.8
Glyma.14G056500 Glycine max HOM05D004070 ORTHO05D004904 3.3e-86 323.6 555 35.3
FAN06G4674 Fragaria x ananassa HOM05D004070 ORTHO05D004904 5.6e-86 322.8 601 33.9
Lj6g0014816 Lotus japonicus HOM05D004070 ORTHO05D004904 5.6e-86 322.8 566 34.3
Potri.010G184300 Populus trichocarpa HOM05D004070 ORTHO05D004904 9.6e-86 322.0 563 35.0
CSS0045603 Camellia sinensis var. sinensis HOM05D004070 ORTHO05D004904 1.3e-85 321.6 543 35.4
Mapoly0073s0082 Marchantia polymorpha HOM05D004070 ORTHO05D004904 2.1e-85 320.9 566 37.1
FAN01G1500 Fragaria x ananassa HOM05D004070 ORTHO05D004904 2.8e-85 320.5 584 33.7
Aa31LG11G6530 Aethionema arabicum HOM05D004070 ORTHO05D004904 1.8e-84 317.8 573 34.4
Haze_17281 Corylus avellana HOM05D004070 ORTHO05D004904 1.8e-84 317.8 549 33.3
HanXRQChr17g0536301 Helianthus annuus HOM05D004070 ORTHO05D004904 2.4e-84 317.4 574 32.9
Ciclev10030777m.g Citrus clementina HOM05D004070 ORTHO05D004904 3.1e-84 317.0 568 33.8
Glyma.02G262300 Glycine max HOM05D004070 ORTHO05D004904 6.9e-84 315.8 564 34.4
Glyma.14G056600 Glycine max HOM05D004070 ORTHO05D004904 6.9e-84 315.8 563 34.3
AL3G22590 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 2.0e-83 314.3 565 35.2
Gohir.A10G238300 Gossypium hirsutum HOM05D004070 ORTHO05D004904 3.4e-83 313.5 597 33.0
Gohir.D10G250200 Gossypium hirsutum HOM05D004070 ORTHO05D004904 7.6e-83 312.4 598 32.9
SMO351G0021 Selaginella moellendorffii HOM05D004070 ORTHO05D004904 2.9e-82 310.5 292 52.4
Gorai.011G290600 Gossypium raimondii HOM05D004070 ORTHO05D004904 4.9e-82 309.7 597 32.7
Zm00001eb347620 Zea mays HOM05D004070 ORTHO05D004904 1.4e-81 308.1 541 34.8
Haze_17272 Corylus avellana HOM05D004070 ORTHO05D004904 2.4e-81 307.4 549 33.2
Sed0002479 Sechium edule HOM05D004070 ORTHO05D004904 5.4e-81 306.2 575 35.3
Ciclev10031026m.g Citrus clementina HOM05D004070 ORTHO05D004904 7.1e-81 305.8 566 33.0
CsaV3_5G010510 Cucumis sativus L. HOM05D004070 ORTHO05D004904 9.3e-81 305.4 567 33.7
Sc11g0005320 Simmondsia chinensis HOM05D004070 ORTHO05D004904 2.7e-80 303.9 538 35.9
Migut.F01473 Erythranthe guttata HOM05D004070 ORTHO05D004904 6.0e-80 302.8 560 31.8
arahy.Tifrunner.gnm1.ann1.L3EDXB Arachis hypogaea HOM05D004070 ORTHO05D004904 3.3e-78 297.0 563 32.9
CsaV3_5G010500 Cucumis sativus L. HOM05D004070 ORTHO05D004904 3.3e-78 297.0 565 33.8
Nn2g10988 Nelumbo nucifera HOM05D004070 ORTHO05D004904 4.3e-78 296.6 562 33.1
arahy.Tifrunner.gnm1.ann1.T4ULTV Arachis hypogaea HOM05D004070 ORTHO05D004904 5.6e-78 296.2 563 32.9
ClCG07G004560 Citrullus lanatus HOM05D004070 ORTHO05D004904 2.8e-77 293.9 571 33.5
Manes.10G008500 Manihot esculenta HOM05D004070 ORTHO05D004904 3.7e-77 293.5 556 32.6
FAN10G1680 Fragaria x ananassa HOM05D004070 ORTHO05D004904 1.4e-76 291.6 616 31.5
CBR_g6382 Chara braunii HOM05D004070 ORTHO05D004904 1.8e-76 291.2 290 48.3
ClCG07G004550 Citrullus lanatus HOM05D004070 ORTHO05D004904 5.8e-75 286.2 568 32.4
PSO478G2175 Papaver somniferum HOM05D004070 ORTHO05D004904 1.0e-71 275.4 278 44.2
arahy.Tifrunner.gnm1.ann1.PDR9Z8 Arachis hypogaea HOM05D004070 ORTHO05D004904 3.9e-71 273.5 598 32.6
HPP92_006774 Vanilla planifolia HOM05D004070 ORTHO05D004904 5.1e-71 273.1 575 31.5
arahy.Tifrunner.gnm1.ann1.DADU25 Arachis hypogaea HOM05D004070 ORTHO05D004904 1.6e-69 268.1 601 31.9
PGR142G0892 Punica granatum HOM05D004070 ORTHO05D004904 1.7e-66 258.1 557 31.1
Sabra10G0141500 Salix brachista HOM05D004070 ORTHO05D004904 6.5e-66 256.1 714 28.7
unitig_32.g11775 Utricularia gibba HOM05D004070 ORTHO05D004904 6.5e-66 256.1 524 32.1
COL.COLO4_25787 Corchorus olitorius HOM05D004070 ORTHO05D004904 5.5e-65 253.1 194 59.3
Dinv21779 Davidia involucrata HOM05D004070 ORTHO05D004904 1.3e-63 248.4 214 51.4
AL467U10010 Arabidopsis lyrata HOM05D004070 ORTHO05D004904 3.0e-63 247.3 564 29.8
MELO3C018385.2 Cucumis melo HOM05D004070 ORTHO05D004904 8.7e-63 245.7 259 46.3
BcaC09g48154 Brassica carinata HOM05D004070 ORTHO05D004904 9.7e-62 242.3 206 53.9
Cre13.g582250 Chlamydomonas reinhardtii HOM05D004070 ORTHO05D004904 1.1e-60 238.8 316 42.1
MELO3C018386.2 Cucumis melo HOM05D004070 ORTHO05D004904 2.2e-58 231.1 573 30.0
CANSAT56G2024 Cannabis sativa HOM05D004070 ORTHO05D004904 1.2e-56 225.3 566 29.9
BraA01t04204Z Brassica rapa HOM05D004070 ORTHO05D004904 6.3e-45 186.4 478 29.7
Cpa.g.sc19.130 Carica papaya HOM05D004070 ORTHO05D004904 4.7e-40 170.2 252 35.3
SGA_v2.0_scaffold395G50725 Striga asiatica HOM05D004070 ORTHO05D004904 2.0e-35 154.8 408 28.4
SGA_v2.0_scaffold395G50724 Striga asiatica HOM05D004070 ORTHO05D004904 1.2e-32 145.6 135 48.9
Glyma.02G262251 Glycine max HOM05D004070 ORTHO05D004904 8.8e-31 139.4 386 26.7
MELO3C034437.2 Cucumis melo HOM05D004070 ORTHO05D004904 7.5e-30 136.3 127 50.4
BcaB07g33013 Brassica carinata HOM05D004070 ORTHO05D004904 6.3e-21 106.7 207 31.9
PGSC0003DMG400023947 Solanum tuberosum HOM05D004070 ORTHO05D004904 1.1e-12 79.3 338 25.4
AT3G61010 Arabidopsis thaliana HOM05D004070 ORTHO05D004904 2.5e-09 68.2 202 25.7
Potri.008G073001 Populus trichocarpa HOM05D004070 ORTHO05D004904 1.2e-08 65.9 164 29.9
BcaC06g31359 Brassica carinata HOM05D004070 ORTHO05D000295 1.8e-07 62.0 66 51.5
arahy.Tifrunner.gnm1.ann1.0XTL3F Arachis hypogaea HOM05D004070 ORTHO05D004904 2.3e-07 61.6 133 29.3
BcaB03g16457 Brassica carinata HOM05D004070 ORTHO05D032257 2.3e-07 61.6 58 48.3


User provided reference genes

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