Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 3.0e-93 345.1 167 100.0
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 9.9e-81 303.5 171 86.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 3.3e-76 288.5 171 78.9
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 1.6e-75 286.2 171 79.5
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 4.4e-73 278.1 171 78.4
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.1e-71 273.5 171 74.3
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 3.5e-70 268.5 172 75.0
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 7.8e-70 267.3 171 73.7
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 3.0e-69 265.4 172 73.3
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 1.1e-68 263.5 178 71.9
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 1.5e-68 263.1 178 71.9
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.9e-68 262.7 172 73.3
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 3.3e-68 261.9 171 73.7
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 3.3e-68 261.9 172 72.1
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 5.6e-68 261.2 172 72.7
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 7.3e-68 260.8 178 71.3
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 9.6e-68 260.4 172 72.7
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.6e-67 259.6 172 72.1
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 1.6e-67 259.6 172 72.1
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.6e-67 259.6 171 73.1
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 2.1e-67 259.2 172 72.1
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 2.1e-67 259.2 172 72.1
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 2.8e-67 258.8 171 72.5
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.8e-67 258.8 172 71.5
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 3.6e-67 258.5 178 70.2
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 6.2e-67 257.7 172 72.1
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 8.1e-67 257.3 172 70.9
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 1.4e-66 256.5 172 70.9
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 1.4e-66 256.5 172 70.9
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.4e-66 256.5 172 70.9
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 1.8e-66 256.1 172 72.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 1.8e-66 256.1 177 69.5
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 3.1e-66 255.4 171 71.3
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 3.1e-66 255.4 171 71.9
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.0e-66 255.0 173 69.4
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.0e-66 255.0 172 70.3
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 4.0e-66 255.0 172 70.3
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 5.3e-66 254.6 172 70.9
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 5.3e-66 254.6 171 70.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 6.9e-66 254.2 171 71.9
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 6.9e-66 254.2 172 70.3
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 6.9e-66 254.2 172 69.8
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 1.2e-65 253.4 172 69.2
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.2e-65 253.4 172 69.8
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 1.2e-65 253.4 171 70.8
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 1.5e-65 253.1 171 70.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.5e-65 253.1 171 70.2
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 2.0e-65 252.7 178 68.0
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.0e-65 252.7 171 70.2
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.6e-65 252.3 172 70.9
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 3.4e-65 251.9 172 68.6
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 3.4e-65 251.9 172 70.9
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.4e-65 251.9 172 69.8
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 3.4e-65 251.9 172 69.8
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 4.5e-65 251.5 171 70.8
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 4.5e-65 251.5 172 69.8
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 5.8e-65 251.1 172 68.6
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 5.8e-65 251.1 181 66.9
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 7.6e-65 250.8 170 68.2
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 9.9e-65 250.4 172 69.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 9.9e-65 250.4 170 70.0
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.9e-65 250.4 171 69.6
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 9.9e-65 250.4 172 69.8
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 9.9e-65 250.4 171 71.3
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 9.9e-65 250.4 172 69.2
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 1.3e-64 250.0 172 69.2
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.3e-64 250.0 172 69.2
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.3e-64 250.0 172 69.8
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 1.7e-64 249.6 171 68.4
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 1.7e-64 249.6 171 70.2
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 2.2e-64 249.2 172 68.6
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 2.2e-64 249.2 171 70.2
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.2e-64 249.2 171 69.6
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.2e-64 249.2 172 69.2
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 2.9e-64 248.8 172 68.6
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 3.8e-64 248.4 172 68.0
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 3.8e-64 248.4 171 68.4
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 3.8e-64 248.4 172 69.2
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 3.8e-64 248.4 171 70.2
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 3.8e-64 248.4 172 68.6
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 4.9e-64 248.1 172 68.0
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 4.9e-64 248.1 172 68.0
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.9e-64 248.1 171 67.8
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 4.9e-64 248.1 171 69.6
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 4.9e-64 248.1 171 69.6
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 4.9e-64 248.1 171 69.6
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 4.9e-64 248.1 171 69.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 6.4e-64 247.7 172 69.2
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 6.4e-64 247.7 172 69.2
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 8.4e-64 247.3 172 68.6
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 1.1e-63 246.9 171 69.0
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.4e-63 246.5 171 69.0
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.4e-63 246.5 172 68.6
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.9e-63 246.1 172 68.0
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.4e-63 245.7 172 67.4
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 2.4e-63 245.7 171 69.0
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 2.4e-63 245.7 172 68.6
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.2e-63 245.0 171 68.4
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 9.3e-63 243.8 172 68.6
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 9.3e-63 243.8 171 69.0
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.6e-62 243.0 195 62.6
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 2.1e-62 242.7 178 65.2
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 2.7e-62 242.3 172 66.3
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 2.7e-62 242.3 172 66.9
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.7e-62 242.3 172 67.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 6.0e-62 241.1 171 69.0
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 7.9e-62 240.7 172 66.3
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 7.9e-62 240.7 199 60.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 7.9e-62 240.7 172 67.4
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 2.3e-61 239.2 172 65.7
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 5.1e-61 238.0 178 65.7
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 6.7e-61 237.7 172 67.4
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 4.8e-59 231.5 152 73.7
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 4.0e-58 228.4 151 72.2
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 9.0e-58 227.3 151 72.2
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.2e-57 226.9 172 64.0
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 9.9e-57 223.8 172 63.4
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 4.2e-55 218.4 164 64.6
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 4.2e-55 218.4 217 53.9
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.6e-54 216.5 258 47.3
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.5e-49 198.4 131 72.5
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 3.5e-46 188.7 131 68.7
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 6.7e-45 184.5 131 67.2
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 1.5e-44 183.3 121 73.6
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 2.4e-42 176.0 99 78.8
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 3.2e-39 165.6 110 70.9
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 1.0e-37 160.6 387 31.0
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 3.3e-36 155.6 146 56.8
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 5.7e-36 154.8 167 46.1
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.2e-33 147.1 136 61.0
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 4.5e-33 145.2 157 48.4
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 1.4e-31 140.2 152 48.0
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 7.2e-31 137.9 173 47.4
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.4e-26 122.9 73 75.3
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 1.8e-21 106.7 79 69.6
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 2.0e-20 103.2 60 75.0
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.1e-15 87.4 65 63.1
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.9e-15 86.7 64 65.6
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 1.8e-10 70.1 40 80.0
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 3.5e-09 65.9 50 64.0
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 6.5e-08 61.6 42 61.9
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 3.2e-07 59.3 51 51.0
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 6.1e-06 55.1 40 60.0


User provided reference genes

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