Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 0.0e+00 1407.5 750 100.0
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.9e-301 1038.9 725 75.4
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.9e-301 1038.9 725 75.4
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 8.8e-153 545.0 569 53.6
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 2.3e-145 520.4 740 44.7
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.6e-133 480.3 451 56.5
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 1.5e-131 474.6 606 47.7
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 2.3e-129 467.2 745 42.7
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.5e-128 464.5 754 41.8
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 2.6e-128 463.8 613 46.3
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 3.3e-128 463.4 747 42.0
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 3.3e-128 463.4 759 41.1
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 4.4e-128 463.0 609 46.5
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.2e-127 460.7 748 40.4
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.2e-127 460.7 754 41.5
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 2.8e-127 460.3 603 46.8
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 8.2e-127 458.8 740 41.4
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 8.2e-127 458.8 749 41.8
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 1.1e-126 458.4 755 40.8
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 1.1e-126 458.4 737 41.2
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 1.1e-126 458.4 602 47.0
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 1.4e-126 458.0 605 46.1
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 1.8e-126 457.6 753 41.2
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.4e-126 457.2 754 41.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 4.1e-126 456.4 754 41.4
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.1e-126 456.4 618 47.1
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 4.1e-126 456.4 603 47.1
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 5.3e-126 456.1 755 41.3
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 7.0e-126 455.7 599 47.2
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 9.1e-126 455.3 613 45.4
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.6e-125 454.5 749 41.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 2.0e-125 454.1 756 40.3
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 2.7e-125 453.8 749 41.7
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 3.5e-125 453.4 766 41.1
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 5.9e-125 452.6 741 41.2
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 7.7e-125 452.2 766 41.5
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 7.7e-125 452.2 750 41.6
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.0e-124 451.8 608 46.1
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.3e-124 451.4 749 40.7
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 1.7e-124 451.1 613 46.3
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 1.7e-124 451.1 775 40.4
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 1.7e-124 451.1 773 40.8
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.2e-124 450.7 595 46.7
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 2.2e-124 450.7 606 46.5
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 2.9e-124 450.3 774 40.4
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.9e-124 450.3 599 46.1
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 3.8e-124 449.9 595 46.6
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 5.0e-124 449.5 614 44.8
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 6.5e-124 449.1 612 46.7
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.5e-124 448.7 738 41.3
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 8.5e-124 448.7 747 41.0
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 1.1e-123 448.4 776 40.2
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 1.5e-123 448.0 777 40.2
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.9e-123 447.6 588 46.6
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.9e-123 447.6 777 39.3
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.9e-123 447.6 617 45.9
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.9e-123 447.6 612 46.2
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 2.5e-123 447.2 775 40.1
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 2.5e-123 447.2 748 42.6
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 3.2e-123 446.8 748 40.8
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 4.2e-123 446.4 777 39.4
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.2e-123 446.4 608 44.7
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.2e-123 446.4 759 40.7
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.5e-123 446.0 752 40.7
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 9.4e-123 445.3 779 39.5
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.6e-122 444.5 777 39.9
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.6e-122 444.5 773 40.1
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.6e-122 444.5 773 40.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.6e-122 444.5 773 40.9
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.1e-122 444.1 758 39.7
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.7e-122 443.7 616 45.8
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 2.7e-122 443.7 760 40.5
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 2.7e-122 443.7 772 40.9
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 3.6e-122 443.4 763 40.0
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.0e-121 441.8 772 40.2
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 1.0e-121 441.8 605 44.6
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 1.0e-121 441.8 615 45.4
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 1.4e-121 441.4 765 40.3
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 2.3e-121 440.7 772 40.0
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.3e-121 440.7 742 40.2
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 2.3e-121 440.7 772 40.4
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 4.0e-121 439.9 760 39.6
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 4.0e-121 439.9 761 39.6
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 5.2e-121 439.5 612 45.1
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 5.2e-121 439.5 612 45.4
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 6.8e-121 439.1 515 48.7
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 6.8e-121 439.1 736 40.6
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.2e-120 438.3 607 45.5
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.5e-120 438.0 495 49.9
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 2.0e-120 437.6 747 40.0
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 2.0e-120 437.6 592 45.4
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.0e-120 437.6 737 41.1
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 2.0e-120 437.6 614 44.0
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.4e-120 436.4 746 40.5
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.4e-120 436.4 753 39.8
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 5.7e-120 436.0 606 45.0
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 5.7e-120 436.0 608 44.6
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.5e-120 435.6 609 44.2
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.3e-119 434.9 614 44.3
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.3e-119 434.9 604 45.9
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.2e-119 434.1 735 40.4
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 2.8e-119 433.7 738 39.2
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 6.3e-119 432.6 593 45.4
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 6.3e-119 432.6 747 40.0
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 6.3e-119 432.6 617 43.9
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 8.3e-119 432.2 590 44.4
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.1e-118 431.8 608 44.9
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.1e-118 430.3 607 45.3
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.1e-118 430.3 591 44.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.1e-118 429.9 757 40.3
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 5.4e-118 429.5 589 44.7
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 9.1e-118 428.7 593 45.7
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.2e-117 428.3 705 41.1
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 1.2e-117 428.3 705 41.1
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.6e-117 427.9 742 39.8
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.0e-117 427.6 609 44.8
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.7e-117 427.2 503 49.1
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.5e-117 426.8 615 45.5
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.0e-116 425.2 628 43.9
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.3e-116 424.9 609 44.2
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.7e-116 424.5 631 44.1
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.7e-116 424.5 433 54.7
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 5.0e-116 422.9 762 38.7
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 4.2e-115 419.9 622 42.8
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 5.5e-115 419.5 606 45.0
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 9.5e-115 418.7 599 43.9
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 2.1e-114 417.5 730 39.6
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 2.8e-114 417.2 585 44.4
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 3.6e-114 416.8 640 42.5
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 6.1e-114 416.0 766 39.0
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 8.0e-114 415.6 664 41.7
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.6e-112 410.6 654 42.2
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.6e-112 410.6 627 42.1
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 4.4e-112 409.8 737 39.5
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.8e-111 407.1 595 43.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.4e-110 404.8 807 37.2
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 5.4e-110 402.9 585 44.6
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 5.4e-110 402.9 654 41.6
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.2e-109 401.7 791 37.4
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.3e-103 381.7 756 37.0
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.2e-103 380.9 625 40.0
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 2.9e-103 380.6 749 37.5
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 8.6e-100 369.0 366 54.9
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 6.2e-90 336.3 496 40.7
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 2.3e-89 334.3 378 51.3
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.3e-84 317.8 365 49.6
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 3.9e-84 317.0 778 33.9
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 3.1e-81 307.4 637 35.5
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 2.2e-79 301.2 573 38.6
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 1.4e-78 298.5 422 44.5
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.9e-75 288.1 393 45.3
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 1.2e-72 278.9 502 39.2
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.5e-64 251.9 636 34.1
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 1.2e-61 242.3 302 48.3
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 6.7e-52 209.9 260 48.1
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.6e-45 187.2 250 48.4
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 2.5e-43 181.4 137 70.8
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 4.3e-43 180.6 185 57.3
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 1.2e-32 146.0 253 36.0
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 2.7e-29 134.8 98 64.3
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 3.1e-25 121.3 190 41.1
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 1.7e-23 115.5 304 31.9
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 1.7e-23 115.5 418 26.6
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 8.2e-18 96.7 74 70.3
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 1.8e-17 95.5 93 55.9
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 4.1e-17 94.4 146 43.2
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 7.0e-17 93.6 93 46.2
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 2.6e-16 91.7 50 84.0
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 8.5e-15 86.7 57 66.7
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-14 86.3 71 53.5
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.1e-14 86.3 71 53.5
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 2.7e-13 81.6 61 60.7
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 2.7e-13 81.6 61 60.7
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 1.2e-11 76.3 63 57.1
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 3.4e-11 74.7 375 25.1
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 4.1e-09 67.8 54 64.8
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 2.0e-08 65.5 57 52.6
SEGI_23209 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 5.9e-08 63.9 307 28.0


User provided reference genes

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