Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_17220 Physcomitrium patens HOM05D002665 ORTHO05D002991 4.0e-193 678.3 452 100.0
Pp3c26_6710 Physcomitrium patens HOM05D002665 ORTHO05D002991 7.1e-65 252.3 458 49.8
ATR0626G381 Amborella trichopoda HOM05D002665 ORTHO05D002991 1.4e-25 121.7 424 32.5
Potri.006G276900 Populus trichocarpa HOM05D002665 ORTHO05D002991 1.3e-23 115.2 438 29.9
CANSAT25G0789 Cannabis sativa HOM05D002665 ORTHO05D002991 3.3e-22 110.5 304 38.8
MSTRG.11823 Avicennia marina HOM05D002665 ORTHO05D002991 4.3e-22 110.2 340 32.4
SGA_v2.0_scaffold27G11647 Striga asiatica HOM05D002665 ORTHO05D002991 2.8e-21 107.5 345 31.3
Migut.E01410 Erythranthe guttata HOM05D002665 ORTHO05D002991 8.2e-21 105.9 436 31.4
AT2G24420 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 1.1e-20 105.5 267 39.0
Ca_15631_v3 Cicer arietinum L. HOM05D002665 ORTHO05D002991 1.1e-20 105.5 278 38.1
Gorai.009G069200 Gossypium raimondii HOM05D002665 ORTHO05D002991 1.8e-20 104.8 432 30.3
Pp3c15_14170 Physcomitrium patens HOM05D002665 ORTHO05D002991 1.8e-20 104.8 455 29.9
Duzib168G2001 Durio zibethinus HOM05D002665 ORTHO05D002991 2.4e-20 104.4 453 32.9
MD08G1121400 Malus domestica HOM05D002665 ORTHO05D002991 2.4e-20 104.4 307 35.2
Prupe.1G455000 Prunus persica HOM05D002665 ORTHO05D002991 3.1e-20 104.0 291 37.1
TPR.G1355 Trifolium pratense HOM05D002665 ORTHO05D002991 4.1e-20 103.6 240 44.6
Aqoxy7G02750 Aquilegia oxysepala HOM05D002665 ORTHO05D002991 5.3e-20 103.2 455 30.1
Potri.018G003700 Populus trichocarpa HOM05D002665 ORTHO05D002991 5.3e-20 103.2 281 36.3
GSVIVG01035555001 Vitis vinifera HOM05D002665 ORTHO05D002991 5.3e-20 103.2 263 35.4
MSTRG.1740 Avicennia marina HOM05D002665 ORTHO05D002991 1.5e-19 101.7 358 32.7
Migut.A00460 Erythranthe guttata HOM05D002665 ORTHO05D002991 1.5e-19 101.7 322 32.3
Gohir.D05G068300 Gossypium hirsutum HOM05D002665 ORTHO05D002991 1.5e-19 101.7 326 32.8
Gohir.A05G065951 Gossypium hirsutum HOM05D002665 ORTHO05D002991 2.6e-19 100.9 325 32.9
Thecc.09G004300 Theobroma cacao HOM05D002665 ORTHO05D002991 2.6e-19 100.9 344 32.6
Aa31LG7G11370 Aethionema arabicum HOM05D002665 ORTHO05D002991 5.9e-19 99.8 254 38.2
Solyc07g008970.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 5.9e-19 99.8 388 29.4
THA.LOC104803590 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 1.0e-18 99.0 265 44.9
THA.LOC104819928 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 1.0e-18 99.0 275 39.6
Eucgr.C02115 Eucalyptus grandis HOM05D002665 ORTHO05D002991 1.3e-18 98.6 327 32.4
Manes.03G002000 Manihot esculenta HOM05D002665 ORTHO05D002991 2.2e-18 97.8 261 36.4
Medtr3g109330 Medicago truncatula HOM05D002665 ORTHO05D002991 3.8e-18 97.1 256 39.8
MD15G1100200 Malus domestica HOM05D002665 ORTHO05D002991 5.0e-18 96.7 282 36.2
TWI63G0924 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 5.0e-18 96.7 269 36.1
Cfa013322 Carpinus fangiana HOM05D002665 ORTHO05D002991 6.5e-18 96.3 265 34.7
Hma1.2p1_0891F.1_g233110 Hydrangea macrophylla HOM05D002665 ORTHO05D002991 8.5e-18 95.9 300 37.7
MBI13_g31541_MAGBIO Magnolia biondii HOM05D002665 ORTHO05D002991 8.5e-18 95.9 342 32.2
Phvul.009G104300 Phaseolus vulgaris HOM05D002665 ORTHO05D002991 8.5e-18 95.9 329 37.1
AL4G14850 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 1.1e-17 95.5 351 31.9
Lalb_Chr23g0269331 Lupinus albus HOM05D002665 ORTHO05D002991 1.1e-17 95.5 324 35.2
RcHm_v2.0_Chr6g0305521 Rosa chinensis HOM05D002665 ORTHO05D002991 1.1e-17 95.5 278 41.7
VMungo1309G0855 Vigna mungo HOM05D002665 ORTHO05D002991 1.1e-17 95.5 266 36.8
CSS0018914 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.4e-17 95.1 315 31.7
FAN27G0789 Fragaria x ananassa HOM05D002665 ORTHO05D002991 1.4e-17 95.1 340 36.2
Lalb_Chr11g0064281 Lupinus albus HOM05D002665 ORTHO05D002991 1.4e-17 95.1 332 36.7
Sp7g29200 Schrenkiella parvula HOM05D002665 ORTHO05D002991 1.9e-17 94.7 260 41.5
Sabra18G0001800 Salix brachista HOM05D002665 ORTHO05D002991 2.5e-17 94.4 359 31.5
SalBow8G3867 Salvia bowleyana HOM05D002665 ORTHO05D002991 2.5e-17 94.4 414 30.0
BcaC09g51913 Brassica carinata HOM05D002665 ORTHO05D002991 3.2e-17 94.0 340 32.9
Pp3c16_21550 Physcomitrium patens HOM05D002665 ORTHO05D002991 3.2e-17 94.0 456 30.7
arahy.Tifrunner.gnm1.ann1.D04E55 Arachis hypogaea HOM05D002665 ORTHO05D002991 4.2e-17 93.6 351 34.5
PSO144G0166 Papaver somniferum HOM05D002665 ORTHO05D002991 4.2e-17 93.6 416 31.7
PSO170G0184 Papaver somniferum HOM05D002665 ORTHO05D002991 4.2e-17 93.6 415 31.8
Carub.0007s0922 Capsella rubella HOM05D002665 ORTHO05D002991 5.5e-17 93.2 340 33.8
arahy.Tifrunner.gnm1.ann1.DQG69K Arachis hypogaea HOM05D002665 ORTHO05D002991 7.2e-17 92.8 345 34.8
Carub.0004s0377 Capsella rubella HOM05D002665 ORTHO05D002991 7.2e-17 92.8 335 33.7
Oeu026032.1 Olea europaea HOM05D002665 ORTHO05D002991 7.2e-17 92.8 276 33.3
PGR044G2224 Punica granatum HOM05D002665 ORTHO05D002991 7.2e-17 92.8 275 31.3
unitig_747.g21906 Utricularia gibba HOM05D002665 ORTHO05D002991 7.2e-17 92.8 438 30.6
A01p06970 Brassica napus HOM05D002665 ORTHO05D002991 9.4e-17 92.4 340 32.6
ECA240G1424 Erigeron canadensis HOM05D002665 ORTHO05D002991 9.4e-17 92.4 243 37.0
BcaNung05320 Brassica carinata HOM05D002665 ORTHO05D002991 1.2e-16 92.0 342 32.5
FvH4_2g36360 Fragaria vesca HOM05D002665 ORTHO05D002991 1.2e-16 92.0 335 38.8
BolC1t00751H Brassica oleracea HOM05D002665 ORTHO05D002991 1.6e-16 91.7 411 31.6
Glyma.06G080100 Glycine max HOM05D002665 ORTHO05D002991 1.6e-16 91.7 248 41.1
Ah.11g044010 Amaranthus hybridus HOM05D002665 ORTHO05D002991 2.1e-16 91.3 391 31.7
Lj1g0017245 Lotus japonicus HOM05D002665 ORTHO05D002991 2.1e-16 91.3 264 34.5
TAR625G0782 Trochodendron aralioides HOM05D002665 ORTHO05D002991 2.1e-16 91.3 344 36.0
Thhalv10025225m.g Eutrema salsugineum HOM05D002665 ORTHO05D002991 2.7e-16 90.9 396 32.1
SGA_v2.0_scaffold169G38589 Striga asiatica HOM05D000033 ORTHO05D001317 2.7e-16 90.9 265 34.3
Zm00001eb102150 Zea mays HOM05D002665 ORTHO05D002991 2.7e-16 90.9 439 31.0
Dinv13248 Davidia involucrata HOM05D002665 ORTHO05D002991 4.6e-16 90.1 279 34.1
Dinv36353 Davidia involucrata HOM05D002665 ORTHO05D002991 6.1e-16 89.7 254 38.2
CARHR117640 Cardamine hirsuta HOM05D002665 ORTHO05D002991 1.0e-15 89.0 322 32.0
AT4G31340 Arabidopsis thaliana HOM05D002665 ORTHO05D002991 1.4e-15 88.6 257 35.4
CDE06G0091 Ceratophyllum demersum HOM05D002665 ORTHO05D002991 1.8e-15 88.2 423 30.0
Peaxi162Scf00045g01455 Petunia axillaris HOM05D002665 ORTHO05D002991 2.3e-15 87.8 264 34.5
TAR383G0456 Trochodendron aralioides HOM05D002665 ORTHO05D002991 2.3e-15 87.8 317 30.6
Sc09g0007840 Simmondsia chinensis HOM05D002665 ORTHO05D002991 3.9e-15 87.0 440 30.2
C07p58550 Brassica napus HOM05D002665 ORTHO05D002991 5.1e-15 86.7 324 31.8
BolC7t46310H Brassica oleracea HOM05D002665 ORTHO05D002991 5.1e-15 86.7 324 31.8
EL10Ac2g03706 Beta vulgaris HOM05D002665 ORTHO05D002991 8.8e-15 85.9 253 36.0
C01p07700 Brassica napus HOM05D002665 ORTHO05D002991 1.1e-14 85.5 343 32.1
BraA01t00645Z Brassica rapa HOM05D002665 ORTHO05D002991 1.1e-14 85.5 437 31.1
Os09g0497700 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 1.1e-14 85.5 260 31.9
SEGI_19030 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 1.1e-14 85.5 243 35.4
AL7G20740 Arabidopsis lyrata HOM05D002665 ORTHO05D002991 1.5e-14 85.1 275 33.8
Ciclev10008249m.g Citrus clementina HOM05D002665 ORTHO05D002991 2.0e-14 84.7 283 37.8
Solyc08g006030.4 Solanum lycopersicum HOM05D002665 ORTHO05D002991 2.0e-14 84.7 241 44.0
Sopen08g002000 Solanum pennellii HOM05D002665 ORTHO05D002991 4.3e-14 83.6 241 43.6
Lalb_Chr08g0243391 Lupinus albus HOM05D002665 ORTHO05D002991 5.7e-14 83.2 295 38.0
CiPaw.08G022000 Carya illinoinensis HOM05D002665 ORTHO05D002991 7.4e-14 82.8 269 33.8
AUR62020636 Chenopodium quinoa HOM05D002665 ORTHO05D002991 9.7e-14 82.4 439 29.2
BolC8t51501H Brassica oleracea HOM05D002665 ORTHO05D002991 1.3e-13 82.0 260 30.8
CSS0011343 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.3e-13 82.0 315 31.1
Sopen07g004920 Solanum pennellii HOM05D002665 ORTHO05D002991 1.3e-13 82.0 302 30.5
C08p39280 Brassica napus HOM05D002665 ORTHO05D002991 1.7e-13 81.6 260 30.8
Hund03271 Selenicereus undatus HOM05D002665 ORTHO05D002991 1.7e-13 81.6 435 28.0
BcaC07g40934 Brassica carinata HOM05D002665 ORTHO05D002991 2.2e-13 81.3 261 30.7
Nitab4.5_0006603g0020 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.2e-13 81.3 253 33.2
HPP92_004710 Vanilla planifolia HOM05D002665 ORTHO05D002991 2.2e-13 81.3 325 29.5
Manes.16G136900 Manihot esculenta HOM05D002665 ORTHO05D002991 2.8e-13 80.9 268 29.1
THA.LOC104803883 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 2.8e-13 80.9 254 40.6
Zm00001eb035730 Zea mays HOM05D002665 ORTHO05D002991 2.8e-13 80.9 324 30.9
A03p60640 Brassica napus HOM05D002665 ORTHO05D002991 3.7e-13 80.5 406 29.6
CiPaw.07G208800 Carya illinoinensis HOM05D002665 ORTHO05D002991 3.7e-13 80.5 251 34.7
COL.COLO4_18617 Corchorus olitorius HOM05D002665 ORTHO05D002991 3.7e-13 80.5 441 28.3
Oeu002014.1 Olea europaea HOM05D002665 ORTHO05D002991 3.7e-13 80.5 437 28.1
AUR62038745 Chenopodium quinoa HOM05D002665 ORTHO05D002991 4.8e-13 80.1 436 27.8
Dinv26437 Davidia involucrata HOM05D002665 ORTHO05D002991 4.8e-13 80.1 423 28.1
Nn8g40895 Nelumbo nucifera HOM05D002665 ORTHO05D002991 4.8e-13 80.1 278 32.7
DCAR_019798 Daucus carota HOM05D002665 ORTHO05D002991 6.3e-13 79.7 426 27.0
Pp3c25_13760 Physcomitrium patens HOM05D002665 ORTHO05D002991 6.3e-13 79.7 313 31.3
ECA246G1443 Erigeron canadensis HOM05D002665 ORTHO05D002991 8.2e-13 79.3 326 27.6
Lsat_1_v5_gn_3_24601 Lactuca sativa HOM05D002665 ORTHO05D002991 1.4e-12 78.6 447 27.3
Nn2g12753 Nelumbo nucifera HOM05D002665 ORTHO05D002991 1.4e-12 78.6 439 26.0
Nitab4.5_0000919g0110 Nicotiana tabacum HOM05D002665 ORTHO05D002991 2.4e-12 77.8 314 29.9
SMO356G0475 Selaginella moellendorffii HOM05D002665 ORTHO05D002991 2.4e-12 77.8 364 32.1
CARHR239220 Cardamine hirsuta HOM05D002665 ORTHO05D002991 3.1e-12 77.4 323 29.4
Lsat_1_v5_gn_7_55401 Lactuca sativa HOM05D002665 ORTHO05D002991 4.1e-12 77.0 377 27.6
Sopen08g022940 Solanum pennellii HOM05D002665 ORTHO05D002991 4.1e-12 77.0 245 32.2
CAN.G195.4 Capsicum annuum HOM05D002665 ORTHO05D002991 5.3e-12 76.6 244 32.4
FAN15G1304 Fragaria x ananassa HOM05D002665 ORTHO05D002991 5.3e-12 76.6 335 34.9
Cc06_g21730 Coffea canephora HOM05D002665 ORTHO05D002991 6.9e-12 76.3 314 29.9
Sabra06G0214600 Salix brachista HOM05D002665 ORTHO05D002991 6.9e-12 76.3 393 29.3
BraA04t17483Z Brassica rapa HOM05D002665 ORTHO05D002991 9.1e-12 75.9 354 29.9
QL12p026047 Quercus lobata HOM05D002665 ORTHO05D002991 9.1e-12 75.9 261 34.9
PGSC0003DMG400028754 Solanum tuberosum HOM05D002665 ORTHO05D002991 9.1e-12 75.9 428 27.6
Solyc08g074290.3 Solanum lycopersicum HOM05D002665 ORTHO05D002991 1.2e-11 75.5 239 32.6
PGSC0003DMG400014854 Solanum tuberosum HOM05D002665 ORTHO05D002991 1.2e-11 75.5 269 39.0
AagrBONN_evm.TU.Sc2ySwM_228.402 Anthoceros agrestis HOM05D001333 ORTHO05D001208 1.5e-11 75.1 394 28.2
A04p18730 Brassica napus HOM05D002665 ORTHO05D002991 1.5e-11 75.1 260 34.2
HanXRQChr17g0537281 Helianthus annuus HOM05D002665 ORTHO05D002991 1.5e-11 75.1 445 24.9
Cc00_g12740 Coffea canephora HOM05D002665 ORTHO05D002991 2.0e-11 74.7 229 33.6
MELO3C003595.2 Cucumis melo HOM05D002665 ORTHO05D002991 2.6e-11 74.3 352 30.4
HanXRQChr03g0082951 Helianthus annuus HOM05D002665 ORTHO05D002991 2.6e-11 74.3 341 29.0
C04p54020 Brassica napus HOM05D002665 ORTHO05D002991 3.4e-11 73.9 257 34.6
BraA03t15106Z Brassica rapa HOM05D002665 ORTHO05D002991 3.4e-11 73.9 402 28.1
BolC4t26954H Brassica oleracea HOM05D002665 ORTHO05D002991 4.5e-11 73.6 409 30.1
DCAR_000689 Daucus carota HOM05D002665 ORTHO05D002991 4.5e-11 73.6 242 30.6
CAN.G940.9 Capsicum annuum HOM05D002665 ORTHO05D002991 5.9e-11 73.2 248 35.1
CsaV3_3G047330 Cucumis sativus L. HOM05D002665 ORTHO05D002991 5.9e-11 73.2 361 29.9
HanXRQChr17g0538701 Helianthus annuus HOM05D002665 ORTHO05D002991 5.9e-11 73.2 249 31.3
Zm00001eb174670 Zea mays HOM05D002665 ORTHO05D002991 7.7e-11 72.8 290 30.3
Sc06g0001220 Simmondsia chinensis HOM05D002665 ORTHO05D002991 1.0e-10 72.4 391 29.2
Aa31LG2G19020 Aethionema arabicum HOM05D002665 ORTHO05D002991 1.3e-10 72.0 275 32.0
CSS0015738 Camellia sinensis var. sinensis HOM05D002665 ORTHO05D002991 1.3e-10 72.0 294 31.0
Sp4g03440 Schrenkiella parvula HOM05D002665 ORTHO05D002991 2.9e-10 70.9 272 33.5
CDE02G3722 Ceratophyllum demersum HOM05D003490 ORTHO05D004835 3.8e-10 70.5 399 28.6
Mapoly0004s0241 Marchantia polymorpha HOM05D002665 ORTHO05D002991 5.0e-10 70.1 453 25.8
TWI34G1233 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 5.0e-10 70.1 258 33.3
BcaC02g08462 Brassica carinata HOM05D002665 ORTHO05D002991 6.5e-10 69.7 236 35.2
ECA240G2840 Erigeron canadensis HOM05D002665 ORTHO05D002991 6.5e-10 69.7 428 26.6
Os08g0519400 Oryza sativa ssp. japonica HOM05D002665 ORTHO05D002991 6.5e-10 69.7 235 32.8
Peaxi162Scf00213g00118 Petunia axillaris HOM05D002665 ORTHO05D002991 8.5e-10 69.3 279 30.5
Actinidia01290 Actinidia chinensis HOM05D002665 ORTHO05D002991 1.1e-09 68.9 430 26.7
THA.LOC104814666 Tarenaya hassleriana HOM05D002665 ORTHO05D002991 1.4e-09 68.6 379 21.6
Thecc.09G183600 Theobroma cacao HOM05D002665 ORTHO05D002991 1.4e-09 68.6 451 20.4
A09p56320 Brassica napus HOM05D002665 ORTHO05D002991 1.9e-09 68.2 258 32.6
MD15G1100300 Malus domestica HOM05D002665 ORTHO05D002991 4.2e-09 67.0 124 35.5
BcaC02g08457 Brassica carinata HOM05D002665 ORTHO05D002991 7.2e-09 66.2 398 29.1
ClCG11G013940 Citrullus lanatus HOM05D002665 ORTHO05D002991 2.1e-08 64.7 321 29.9
SMO356G0135 Selaginella moellendorffii HOM05D002665 ORTHO05D002991 2.1e-08 64.7 258 40.3
MSTRG.19380 Avicennia marina HOM05D002665 ORTHO05D002991 1.0e-07 62.4 250 27.2
Sed0013595 Sechium edule HOM05D002665 ORTHO05D002991 1.4e-07 62.0 346 29.5
HanXRQChr13g0411771 Helianthus annuus HOM05D002665 ORTHO05D002991 2.3e-07 61.2 230 31.7
Nitab4.5_0001392g0090 Nicotiana tabacum HOM05D002665 ORTHO05D002991 3.0e-07 60.8 438 25.3
BcaB06g27967 Brassica carinata HOM05D002665 ORTHO05D002991 8.8e-07 59.3 80 40.0
HPP92_010794 Vanilla planifolia HOM05D002665 ORTHO05D002991 8.8e-07 59.3 393 19.6
Lsat_1_v5_gn_5_59921 Lactuca sativa HOM05D002665 ORTHO05D002991 1.1e-06 58.9 242 30.6
SEGI_07372 Sequoiadendron giganteum HOM05D002665 ORTHO05D002991 3.3e-06 57.4 163 28.2
TWI32G0516 Tripterygium wilfordii HOM05D002665 ORTHO05D002991 4.4e-06 57.0 252 32.9
BcaNung01529 Brassica carinata HOM05D002665 ORTHO05D002684 5.7e-06 56.6 118 50.8


User provided reference genes

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