Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 1.2e-273 946.0 513 100.0
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 2.2e-155 553.1 523 62.1
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 3.4e-140 502.7 512 54.9
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 8.4e-139 498.0 509 53.6
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 1.7e-136 490.3 509 52.7
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.3e-136 490.0 510 54.1
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 3.9e-136 489.2 508 53.1
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 5.1e-136 488.8 510 51.8
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 1.9e-135 486.9 510 52.9
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 2.5e-135 486.5 472 59.3
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 4.3e-135 485.7 509 52.8
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 9.6e-135 484.6 508 53.9
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 9.6e-135 484.6 508 50.6
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 1.6e-134 483.8 508 52.2
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 6.2e-134 481.9 509 53.2
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 8.1e-134 481.5 509 53.8
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 1.1e-133 481.1 508 51.6
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 1.1e-133 481.1 508 50.8
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 1.4e-133 480.7 508 53.3
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 1.4e-133 480.7 509 51.9
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 1.8e-133 480.3 507 54.2
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 4.0e-133 479.2 509 51.9
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 6.9e-133 478.4 510 52.0
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 6.9e-133 478.4 511 52.3
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 1.2e-132 477.6 506 52.0
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.5e-132 477.2 508 55.1
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 2.0e-132 476.9 513 52.8
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 2.0e-132 476.9 508 53.3
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 3.4e-132 476.1 508 54.5
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 4.5e-132 475.7 509 52.3
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 5.8e-132 475.3 508 51.0
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 7.6e-132 474.9 509 51.7
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 7.6e-132 474.9 507 51.7
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 7.6e-132 474.9 506 50.8
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 1.7e-131 473.8 506 52.8
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 1.7e-131 473.8 508 50.6
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 3.8e-131 472.6 508 50.6
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 4.9e-131 472.2 509 52.5
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 6.4e-131 471.9 508 52.8
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 8.4e-131 471.5 510 52.2
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 8.4e-131 471.5 508 51.0
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 1.1e-130 471.1 508 55.3
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 1.4e-130 470.7 510 52.2
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 1.4e-130 470.7 509 50.9
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 1.9e-130 470.3 509 50.5
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 1.9e-130 470.3 508 51.8
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.4e-130 469.9 509 54.6
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 3.2e-130 469.5 511 50.7
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 3.2e-130 469.5 509 50.7
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 3.2e-130 469.5 508 53.0
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 3.2e-130 469.5 507 51.9
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 3.2e-130 469.5 510 51.6
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 5.5e-130 468.8 512 50.6
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 5.5e-130 468.8 506 53.4
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 7.1e-130 468.4 509 50.7
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 7.1e-130 468.4 509 54.4
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 9.3e-130 468.0 516 50.2
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 9.3e-130 468.0 508 52.6
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 9.3e-130 468.0 507 52.9
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 9.3e-130 468.0 508 52.8
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 1.6e-129 467.2 510 50.8
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 1.6e-129 467.2 508 50.8
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 2.1e-129 466.8 517 55.1
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 2.7e-129 466.5 509 49.7
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 3.5e-129 466.1 508 51.6
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 4.6e-129 465.7 507 53.3
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 4.6e-129 465.7 507 53.1
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 4.6e-129 465.7 511 52.3
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 6.0e-129 465.3 507 52.9
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 6.0e-129 465.3 511 51.7
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 6.0e-129 465.3 511 51.7
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 7.9e-129 464.9 508 50.4
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 7.9e-129 464.9 511 53.4
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 1.0e-128 464.5 511 53.0
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 1.0e-128 464.5 509 53.8
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 1.0e-128 464.5 508 53.1
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.3e-128 464.2 506 49.2
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 3.0e-128 463.0 502 50.2
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 3.9e-128 462.6 508 52.0
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 3.9e-128 462.6 531 49.3
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 6.7e-128 461.8 507 52.5
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 8.7e-128 461.5 508 52.0
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 8.7e-128 461.5 507 52.5
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 1.1e-127 461.1 508 53.1
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 1.1e-127 461.1 511 50.9
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 1.5e-127 460.7 506 49.0
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.5e-127 460.7 512 52.3
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.9e-127 460.3 510 52.4
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 2.5e-127 459.9 506 53.0
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 2.5e-127 459.9 508 50.2
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 4.3e-127 459.1 510 54.5
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 4.3e-127 459.1 508 51.4
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 4.3e-127 459.1 509 52.1
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 5.6e-127 458.8 509 51.9
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 5.6e-127 458.8 510 50.2
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 5.6e-127 458.8 509 52.8
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 7.4e-127 458.4 508 50.0
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 9.6e-127 458.0 507 50.3
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 1.3e-126 457.6 508 52.8
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 2.8e-126 456.4 501 50.1
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 2.8e-126 456.4 510 48.6
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 3.7e-126 456.1 508 53.0
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 3.7e-126 456.1 445 54.8
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 4.8e-126 455.7 506 52.6
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 6.2e-126 455.3 508 51.4
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 8.1e-126 454.9 508 52.4
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 8.1e-126 454.9 506 48.8
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 1.1e-125 454.5 508 52.4
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 1.1e-125 454.5 508 51.2
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.8e-125 453.8 508 52.4
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 1.8e-125 453.8 508 51.4
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 2.4e-125 453.4 510 52.2
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 2.4e-125 453.4 510 52.2
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 6.9e-125 451.8 501 52.5
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 6.9e-125 451.8 507 50.1
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 6.9e-125 451.8 506 50.4
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 6.9e-125 451.8 506 49.8
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 9.0e-125 451.4 509 51.5
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.2e-124 451.1 506 49.6
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 1.5e-124 450.7 510 50.4
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 5.8e-124 448.7 509 48.3
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 1.0e-123 448.0 509 48.3
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 1.0e-123 448.0 508 51.6
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.7e-123 447.2 508 48.8
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 2.9e-123 446.4 510 50.0
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 8.4e-123 444.9 500 50.6
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.1e-122 444.5 507 51.5
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 3.2e-122 443.0 510 48.2
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 4.2e-122 442.6 542 47.0
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 4.2e-122 442.6 509 47.5
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 7.1e-122 441.8 513 52.4
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 1.2e-121 441.0 506 51.8
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 2.1e-121 440.3 509 53.0
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 3.5e-121 439.5 506 50.8
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 7.9e-121 438.3 512 52.1
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 1.0e-120 438.0 522 48.3
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 3.0e-120 436.4 506 52.6
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 3.0e-120 436.4 510 47.8
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 5.1e-120 435.6 510 49.2
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 1.1e-119 434.5 508 50.0
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 1.5e-119 434.1 478 49.8
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 7.4e-119 431.8 510 52.4
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 2.1e-118 430.3 508 48.0
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 3.7e-118 429.5 506 50.8
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 6.3e-118 428.7 508 48.4
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 4.1e-117 426.0 478 49.6
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 1.2e-116 424.5 481 50.7
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 2.0e-116 423.7 409 54.0
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.3e-115 421.0 507 46.2
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 1.1e-114 417.9 506 46.6
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 4.6e-113 412.5 478 50.6
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 5.7e-111 405.6 468 45.9
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 9.0e-109 398.3 469 50.7
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 9.0e-109 398.3 507 46.4
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 1.2e-108 397.9 491 48.7
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 1.3e-107 394.4 510 44.7
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 2.2e-107 393.7 400 56.2
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 5.0e-107 392.5 510 46.7
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 4.6e-105 386.0 508 45.3
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 8.2e-102 375.2 519 41.2
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 5.7e-95 352.4 380 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 1.7e-94 350.9 419 50.6
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.1e-90 338.2 479 42.2
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 1.6e-84 317.8 327 56.6
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.2e-83 313.9 508 38.6
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 1.8e-77 294.3 529 38.4
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.8e-72 277.7 328 52.4
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 7.3e-50 202.6 500 32.0
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 1.4e-40 171.8 144 54.9
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 3.2e-37 160.6 139 54.7
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 8.4e-30 136.0 115 55.7
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 1.6e-28 131.7 172 43.6
Cfa027286 Carpinus fangiana HOM05D003525 ORTHO05D121739 1.4e-24 118.6 238 33.2
Actinidia08229 Actinidia chinensis HOM05D003525 ORTHO05D019487 2.6e-23 114.4 77 71.4
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 6.4e-22 109.8 88 64.8
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 1.8e-19 101.7 81 58.0
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 9.0e-16 89.4 72 55.6
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 2.0e-15 88.2 58 65.5
C07p60610 Brassica napus HOM05D003525 ORTHO05D019487 9.9e-15 85.9 71 62.0
MBI16_g36558_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 1.1e-13 82.4 220 30.9
Atru.chr7.1490 Acer truncatum HOM05D003525 ORTHO05D037886 1.4e-08 65.5 57 49.1
Ah.12g055710 Amaranthus hybridus HOM05D001818 ORTHO05D001780 2.4e-08 64.7 110 40.9
Manes.02G225801 Manihot esculenta HOM05D003525 ORTHO05D025801 4.0e-08 63.9 171 31.6
A03p62940 Brassica napus HOM05D003525 ORTHO05D019487 5.8e-07 60.1 45 60.0
BraA03t15369Z Brassica rapa HOM05D003525 ORTHO05D019487 5.8e-07 60.1 45 60.0
Manes.08G077055 Manihot esculenta HOM05D003525 ORTHO05D025801 1.3e-06 58.9 171 30.4
HPP92_017451 Vanilla planifolia HOM05D003525 ORTHO05D025801 8.4e-06 56.2 96 42.7


User provided reference genes

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