Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_17120 Physcomitrium patens HOM05D001765 ORTHO05D003527 1.2e-67 259.6 126 100.0
Pp3c3_17120 Physcomitrium patens HOM05D001765 ORTHO05D003527 6.2e-35 151.0 125 60.0
SGA_v2.0_scaffold7G03543 Striga asiatica HOM05D006805 ORTHO05D003527 2.4e-15 85.9 121 38.8
GSVIVG01018876001 Vitis vinifera HOM05D001765 ORTHO05D003527 1.6e-14 83.2 126 38.1
MD15G1252600 Malus domestica HOM05D001765 ORTHO05D003527 2.1e-14 82.8 126 38.1
CDE07G0806 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 3.5e-14 82.0 88 43.2
Nitab4.5_0000136g0160 Nicotiana tabacum HOM05D001765 ORTHO05D003527 7.9e-14 80.9 117 37.6
Nitab4.5_0009648g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 7.9e-14 80.9 117 37.6
Zm00001eb314680 Zea mays HOM05D001765 ORTHO05D003527 7.9e-14 80.9 88 45.5
Mapoly0108s0056 Marchantia polymorpha HOM05D001765 ORTHO05D003527 1.0e-13 80.5 125 37.6
Peaxi162Scf01385g00023 Petunia axillaris HOM05D001765 ORTHO05D003527 1.0e-13 80.5 127 37.8
CDE04G0335 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.3e-13 80.1 88 43.2
Migut.H02511 Erythranthe guttata HOM05D001765 ORTHO05D003527 1.3e-13 80.1 126 34.9
FvH4_1g12530 Fragaria vesca HOM05D001765 ORTHO05D003527 1.7e-13 79.7 121 35.5
FAN19G2967 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.7e-13 79.7 121 35.5
FAN28G1354 Fragaria x ananassa HOM05D001765 ORTHO05D003527 1.7e-13 79.7 121 35.5
Oeu002033.1 Olea europaea HOM05D001765 ORTHO05D003527 1.7e-13 79.7 117 36.8
Prupe.7G161600 Prunus persica HOM05D001765 ORTHO05D003527 1.7e-13 79.7 126 35.7
RcHm_v2.0_Chr2g0100461 Rosa chinensis HOM05D001765 ORTHO05D003527 1.7e-13 79.7 115 37.4
CiPaw.08G138100 Carya illinoinensis HOM05D001765 ORTHO05D003527 2.3e-13 79.3 117 35.9
Peaxi162Scf00207g01134 Petunia axillaris HOM05D001765 ORTHO05D003527 2.3e-13 79.3 127 37.0
MD02G1139500 Malus domestica HOM05D001765 ORTHO05D003527 3.9e-13 78.6 88 43.2
Aqoxy5G01550 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 5.1e-13 78.2 122 36.1
Cc07_g11660 Coffea canephora HOM05D001765 ORTHO05D003527 5.1e-13 78.2 88 44.3
Manes.02G222800 Manihot esculenta HOM05D001765 ORTHO05D003527 5.1e-13 78.2 106 35.8
SalBow8G1820 Salvia bowleyana HOM05D001765 ORTHO05D003527 5.1e-13 78.2 123 33.3
Actinidia19217 Actinidia chinensis HOM05D001765 ORTHO05D003527 8.7e-13 77.4 105 38.1
Eucgr.A00850 Eucalyptus grandis HOM05D001765 ORTHO05D003527 8.7e-13 77.4 111 39.6
Solyc02g062530.3 Solanum lycopersicum HOM05D001765 ORTHO05D003527 8.7e-13 77.4 105 41.0
Sopen02g013530 Solanum pennellii HOM05D001765 ORTHO05D003527 8.7e-13 77.4 105 41.0
Os08g0360000 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 1.1e-12 77.0 88 39.8
Cfa006911 Carpinus fangiana HOM05D001765 ORTHO05D003527 2.5e-12 75.9 126 34.9
PGR119G0836 Punica granatum HOM05D001765 ORTHO05D003527 2.5e-12 75.9 88 40.9
CARHR182120 Cardamine hirsuta HOM05D001765 ORTHO05D003527 3.3e-12 75.5 71 43.7
QL06p035070 Quercus lobata HOM05D001765 ORTHO05D003527 3.3e-12 75.5 128 33.6
CsaV3_4G005440 Cucumis sativus L. HOM05D001765 ORTHO05D003527 4.3e-12 75.1 117 35.0
MBI18_g05082_MAGBIO Magnolia biondii HOM05D001765 ORTHO05D003527 4.3e-12 75.1 71 45.1
Rhsim08G0122600 Rhododendron simsii HOM05D001765 ORTHO05D003527 4.3e-12 75.1 124 33.9
unitig_899.g14639 Utricularia gibba HOM05D001765 ORTHO05D003527 4.3e-12 75.1 123 35.8
BcaC03g17719 Brassica carinata HOM05D001765 ORTHO05D005876 5.6e-12 74.7 108 36.1
CANSAT01G1346 Cannabis sativa HOM05D001765 ORTHO05D003527 5.6e-12 74.7 88 40.9
BcaB07g34155 Brassica carinata HOM05D001765 ORTHO05D003527 7.4e-12 74.3 111 34.2
MELO3C016404.2 Cucumis melo HOM05D001765 ORTHO05D003527 7.4e-12 74.3 117 34.2
Dinv05607 Davidia involucrata HOM05D001765 ORTHO05D003527 9.6e-12 73.9 88 37.5
Dinv10225 Davidia involucrata HOM05D001765 ORTHO05D003527 9.6e-12 73.9 88 37.5
A02p38130 Brassica napus HOM05D001765 ORTHO05D003527 1.3e-11 73.6 111 34.2
C02p57300 Brassica napus HOM05D001765 ORTHO05D003527 1.3e-11 73.6 111 34.2
BolC2t11799H Brassica oleracea HOM05D001765 ORTHO05D003527 1.3e-11 73.6 111 34.2
Phvul.008G284700 Phaseolus vulgaris HOM05D001765 ORTHO05D003527 1.6e-11 73.2 88 44.3
VMungo0647G1062 Vigna mungo HOM05D001765 ORTHO05D003527 1.6e-11 73.2 88 44.3
Gohir.A07G233400 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.1e-11 72.8 71 42.3
THA.LOC104826037 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 2.1e-11 72.8 71 42.3
Thecc.04G047100 Theobroma cacao HOM05D001765 ORTHO05D003527 2.1e-11 72.8 128 33.6
Actinidia26093 Actinidia chinensis HOM05D001765 ORTHO05D003527 2.8e-11 72.4 86 38.4
Thhalv10005097m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 2.8e-11 72.4 71 42.3
Sp2g19750 Schrenkiella parvula HOM05D001765 ORTHO05D003527 2.8e-11 72.4 71 42.3
SpUn0021_0100 Schrenkiella parvula HOM05D001765 ORTHO05D003527 2.8e-11 72.4 71 42.3
TWI09G0332 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 2.8e-11 72.4 109 33.9
ATR1125G025 Amborella trichopoda HOM05D001765 ORTHO05D003527 3.6e-11 72.0 71 39.4
Cpa.g.sc6.177 Carica papaya HOM05D001765 ORTHO05D003527 3.6e-11 72.0 71 40.8
vmacro22966 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 3.6e-11 72.0 117 35.0
Aa31LG11G8000 Aethionema arabicum HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
AL8G23120 Arabidopsis lyrata HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
AT5G49410 Arabidopsis thaliana HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
arahy.Tifrunner.gnm1.ann1.IX6XHP Arachis hypogaea HOM05D001765 ORTHO05D003527 6.2e-11 71.2 88 39.8
Carub.0008s0929 Capsella rubella HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
Gohir.D03G000300 Gossypium hirsutum HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
Gorai.003G000600 Gossypium raimondii HOM05D001765 ORTHO05D003527 6.2e-11 71.2 71 40.8
PGSC0003DMG400015496 Solanum tuberosum HOM05D001765 ORTHO05D003527 6.2e-11 71.2 88 38.6
arahy.Tifrunner.gnm1.ann1.WC8DZD Arachis hypogaea HOM05D001765 ORTHO05D003527 8.1e-11 70.9 88 43.2
Gohir.A10G243200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 8.1e-11 70.9 71 40.8
ClCG07G008720 Citrullus lanatus HOM05D001765 ORTHO05D003527 1.1e-10 70.5 130 32.3
Gohir.D04G192700 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.4e-10 70.1 76 40.8
Sabra05G0098000 Salix brachista HOM05D001765 ORTHO05D003527 1.4e-10 70.1 71 40.8
arahy.Tifrunner.gnm1.ann1.EZ0MZE Arachis hypogaea HOM05D001765 ORTHO05D003527 1.8e-10 69.7 88 43.2
arahy.Tifrunner.gnm1.ann1.M20B87 Arachis hypogaea HOM05D001765 ORTHO05D003527 1.8e-10 69.7 88 43.2
Gohir.A01G232040 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.8e-10 69.7 71 42.3
Potri.001G453400 Populus trichocarpa HOM05D001765 ORTHO05D003527 1.8e-10 69.7 88 38.6
Duzib147G0794 Durio zibethinus HOM05D001765 ORTHO05D003527 2.4e-10 69.3 71 39.4
TPR.G1302 Trifolium pratense HOM05D001765 ORTHO05D003527 3.1e-10 68.9 88 42.0
Dinv12396 Davidia involucrata HOM05D001765 ORTHO05D003527 4.0e-10 68.6 85 41.2
Gorai.006G275100 Gossypium raimondii HOM05D001765 ORTHO05D003527 4.0e-10 68.6 71 40.8
CSS0000240 Camellia sinensis var. sinensis HOM05D001765 ORTHO05D003527 5.3e-10 68.2 80 40.0
Ciclev10022684m.g Citrus clementina HOM05D001765 ORTHO05D003527 5.3e-10 68.2 124 35.5
Gohir.A08G000008 Gossypium hirsutum HOM05D001765 ORTHO05D003527 5.3e-10 68.2 71 40.8
Gorai.007G380100 Gossypium raimondii HOM05D001765 ORTHO05D003527 5.3e-10 68.2 71 40.8
TAR375G0793 Trochodendron aralioides HOM05D001765 ORTHO05D003527 5.3e-10 68.2 80 40.0
Gohir.D10G000101 Gossypium hirsutum HOM05D001765 ORTHO05D003527 6.9e-10 67.8 71 36.6
Lalb_Chr08g0235841 Lupinus albus HOM05D001765 ORTHO05D003527 6.9e-10 67.8 71 40.8
Potri.005G118900 Populus trichocarpa HOM05D001765 ORTHO05D003527 6.9e-10 67.8 71 39.4
Atru.chr3.680 Acer truncatum HOM05D001765 ORTHO05D003527 9.0e-10 67.4 103 32.0
Atru.chr3.726 Acer truncatum HOM05D001765 ORTHO05D003527 9.0e-10 67.4 103 32.0
Sabra16G0306500 Salix brachista HOM05D001765 ORTHO05D003527 9.0e-10 67.4 88 37.5
Glyma.14G008500 Glycine max HOM05D001765 ORTHO05D003527 1.2e-09 67.0 88 38.6
Lj1g0003490 Lotus japonicus HOM05D001765 ORTHO05D003527 1.5e-09 66.6 88 40.9
Gohir.A05G416501 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.0e-09 66.2 71 38.0
Gohir.D12G000200 Gossypium hirsutum HOM05D001765 ORTHO05D003527 2.0e-09 66.2 71 38.0
Gorai.004G000500 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.0e-09 66.2 71 38.0
Gorai.010G246100 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.0e-09 66.2 71 38.0
Gorai.012G000100 Gossypium raimondii HOM05D001765 ORTHO05D003527 2.0e-09 66.2 71 38.0
Medtr5g097230 Medicago truncatula HOM05D001765 ORTHO05D003527 2.0e-09 66.2 88 40.9
Psat2g004640 Pisum sativum HOM05D001765 ORTHO05D003527 2.0e-09 66.2 88 40.9
HPP92_011573 Vanilla planifolia HOM05D001765 ORTHO05D003527 2.0e-09 66.2 114 33.3
Sed0024924 Sechium edule HOM05D001765 ORTHO05D003527 2.6e-09 65.9 71 35.2
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 3.4e-09 65.5 85 38.8
AagrBONN_evm.TU.Sc2ySwM_368.478 Anthoceros agrestis HOM05D001765 ORTHO05D003527 4.5e-09 65.1 135 34.1
vmacro11471 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 4.5e-09 65.1 80 38.8
Ca_06451_v3 Cicer arietinum L. HOM05D001765 ORTHO05D003527 5.8e-09 64.7 88 39.8
Cc08_g05160 Coffea canephora HOM05D001765 ORTHO05D003527 7.6e-09 64.3 118 34.7
Gohir.A05G416901 Gossypium hirsutum HOM05D001765 ORTHO05D003527 9.9e-09 63.9 71 36.6
vmacro17720 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 9.9e-09 63.9 112 32.1
vmacro22958 Vaccinium macrocarpon HOM05D001765 ORTHO05D003527 9.9e-09 63.9 112 32.1
BraA07t31525Z Brassica rapa HOM05D001765 ORTHO05D003527 1.3e-08 63.5 76 36.8
A07p39780 Brassica napus HOM05D001765 ORTHO05D003527 1.7e-08 63.2 76 36.8
TWI73G1042 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 2.2e-08 62.8 71 35.2
CiPaw.11G106600 Carya illinoinensis HOM05D001765 ORTHO05D003527 2.9e-08 62.4 116 30.2
Lj2A148G64 Lonicera japonica HOM05D001765 ORTHO05D003527 3.8e-08 62.0 73 39.7
Manes.01G000550 Manihot esculenta HOM05D001765 ORTHO05D003527 3.8e-08 62.0 52 50.0
SEGI_06712 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 3.8e-08 62.0 88 33.0
TWI60G1724 Tripterygium wilfordii HOM05D001765 ORTHO05D003527 4.9e-08 61.6 109 31.2
AagrBONN_evm.TU.Sc2ySwM_228.1612 Anthoceros agrestis HOM05D001765 ORTHO05D003527 6.4e-08 61.2 75 38.7
Duzib084G1229 Durio zibethinus HOM05D001765 ORTHO05D003527 6.4e-08 61.2 79 38.0
C06p48050 Brassica napus HOM05D001765 ORTHO05D003527 8.4e-08 60.8 73 37.0
BolC6t39840H Brassica oleracea HOM05D001765 ORTHO05D003527 8.4e-08 60.8 73 37.0
PGR031G0625 Punica granatum HOM05D001765 ORTHO05D003527 8.4e-08 60.8 93 32.3
THA.LOC104823621 Tarenaya hassleriana HOM05D001765 ORTHO05D003527 8.4e-08 60.8 110 30.9
Sed0027749 Sechium edule HOM05D001765 ORTHO05D003527 1.1e-07 60.5 108 28.7
Zm00001eb210620 Zea mays HOM05D001765 ORTHO05D003527 1.1e-07 60.5 81 39.5
Nn1g00491 Nelumbo nucifera HOM05D001765 ORTHO05D003527 1.4e-07 60.1 84 38.1
Nitab4.5_0006317g0030 Nicotiana tabacum HOM05D001765 ORTHO05D003527 1.4e-07 60.1 113 31.9
PSO063G6238 Papaver somniferum HOM05D001765 ORTHO05D003527 1.4e-07 60.1 53 41.5
PSO782G3477 Papaver somniferum HOM05D001765 ORTHO05D003527 1.4e-07 60.1 53 41.5
Thecc.03G214000 Theobroma cacao HOM05D001765 ORTHO05D003527 1.4e-07 60.1 73 42.5
ATR0579G141 Amborella trichopoda HOM05D001765 ORTHO05D003527 1.9e-07 59.7 89 34.8
ECA232G4044 Erigeron canadensis HOM05D001765 ORTHO05D003527 1.9e-07 59.7 127 31.5
Gohir.1Z049421 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.9e-07 59.7 50 48.0
Gohir.1Z049644 Gossypium hirsutum HOM05D001765 ORTHO05D003527 1.9e-07 59.7 50 48.0
Hma1.2p1_0436F.1_g152890 Hydrangea macrophylla HOM05D001765 ORTHO05D003527 1.9e-07 59.7 52 50.0
MELO3C005810.2 Cucumis melo HOM05D001765 ORTHO05D003527 2.4e-07 59.3 67 38.8
Os03g0852500 Oryza sativa ssp. japonica HOM05D001765 ORTHO05D003527 2.4e-07 59.3 101 36.6
Peaxi162Scf00779g00211 Petunia axillaris HOM05D001765 ORTHO05D003527 2.4e-07 59.3 62 35.5
Actinidia22239 Actinidia chinensis HOM05D001765 ORTHO05D003527 3.2e-07 58.9 52 46.2
Aqoxy5G04386 Aquilegia oxysepala HOM05D001765 ORTHO05D003527 3.2e-07 58.9 67 37.3
Cpa.g.sc37.116 Carica papaya HOM05D001765 ORTHO05D003527 3.2e-07 58.9 58 44.8
HanXRQChr11g0325551 Helianthus annuus HOM05D001765 ORTHO05D003527 3.2e-07 58.9 121 33.1
Hund05221 Selenicereus undatus HOM05D001765 ORTHO05D003527 3.2e-07 58.9 82 30.5
unitig_52.g17201 Utricularia gibba HOM05D000742 ORTHO05D000924 3.2e-07 58.9 76 36.8
Ah.00g000090 Amaranthus hybridus HOM05D001765 ORTHO05D003527 4.2e-07 58.5 104 29.8
EL10Ac1g02248 Beta vulgaris HOM05D001765 ORTHO05D003527 4.2e-07 58.5 90 34.4
CDE11G1166 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 4.2e-07 58.5 113 31.0
Gorai.N020000 Gossypium raimondii HOM05D001765 ORTHO05D003527 4.2e-07 58.5 50 46.0
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 5.5e-07 58.2 72 43.1
Eucgr.D02536 Eucalyptus grandis HOM05D001765 ORTHO05D003527 5.5e-07 58.2 58 39.7
Sp5g29140 Schrenkiella parvula HOM05D001765 ORTHO05D003527 7.1e-07 57.8 73 34.2
SGA_v2.0_scaffold20G09260 Striga asiatica HOM05D001765 ORTHO05D003527 7.1e-07 57.8 76 35.5
CsaV3_5G001370 Cucumis sativus L. HOM05D001765 ORTHO05D003527 9.3e-07 57.4 67 35.8
Migut.E00773 Erythranthe guttata HOM05D001765 ORTHO05D003527 9.3e-07 57.4 74 39.2
Thhalv10019277m.g Eutrema salsugineum HOM05D001765 ORTHO05D003527 9.3e-07 57.4 82 34.1
Lsat_1_v5_gn_4_151821 Lactuca sativa HOM05D001765 ORTHO05D003527 1.2e-06 57.0 128 31.2
BolC6t38486H Brassica oleracea HOM05D001765 ORTHO05D003527 1.6e-06 56.6 73 32.9
ClCG01G001250 Citrullus lanatus HOM05D001765 ORTHO05D003527 1.6e-06 56.6 67 37.3
Nitab4.5_0000450g0050 Nicotiana tabacum HOM05D001765 ORTHO05D003527 1.6e-06 56.6 71 38.0
Hund00380 Selenicereus undatus HOM05D001765 ORTHO05D003527 1.6e-06 56.6 56 44.6
Atru.chr9.1818 Acer truncatum HOM05D001765 ORTHO05D003527 2.1e-06 56.2 67 34.3
Duzib068G1454 Durio zibethinus HOM05D001765 ORTHO05D003527 2.1e-06 56.2 73 37.0
HanXRQChr09g0261241 Helianthus annuus HOM05D001765 ORTHO05D003527 2.1e-06 56.2 108 31.5
Lalb_Chr10g0093061 Lupinus albus HOM05D001765 ORTHO05D003527 2.1e-06 56.2 62 41.9
Sed0026089 Sechium edule HOM05D001765 ORTHO05D003527 2.7e-06 55.8 104 27.9
EL10Ac9g22070 Beta vulgaris HOM05D001765 ORTHO05D003527 3.5e-06 55.5 88 30.7
AUR62012884 Chenopodium quinoa HOM05D001765 ORTHO05D003527 3.5e-06 55.5 88 30.7
CANSAT21G2548 Cannabis sativa HOM05D001765 ORTHO05D003527 4.6e-06 55.1 52 40.4
AUR62027108 Chenopodium quinoa HOM05D001765 ORTHO05D003527 4.6e-06 55.1 88 30.7
MSTRG.2000 Avicennia marina HOM05D001765 ORTHO05D003527 6.0e-06 54.7 77 39.0
Carub.0002s2071 Capsella rubella HOM05D001765 ORTHO05D003527 6.0e-06 54.7 74 33.8
QL93p2012_0027 Quercus lobata HOM05D001765 ORTHO05D003527 6.0e-06 54.7 74 35.1
C06p33710 Brassica napus HOM05D001765 ORTHO05D003527 7.9e-06 54.3 73 32.9
SEGI_00799 Sequoiadendron giganteum HOM05D001765 ORTHO05D003527 7.9e-06 54.3 92 31.5
GSVIVG01019710001 Vitis vinifera HOM05D001765 ORTHO05D003527 7.9e-06 54.3 73 35.6


User provided reference genes

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