Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_15920 Physcomitrium patens HOM05D002364 ORTHO05D002540 3.6e-38 161.0 75 100.0
Pp3c12_5010 Physcomitrium patens HOM05D002364 ORTHO05D002540 8.8e-29 129.8 74 79.7
Mapoly0012s0162 Marchantia polymorpha HOM05D002364 ORTHO05D002540 5.9e-25 117.1 74 73.0
Oeu039147.1 Olea europaea HOM05D002364 ORTHO05D002540 6.5e-24 113.6 74 68.9
AagrBONN_evm.TU.Sc2ySwM_228.3215 Anthoceros agrestis HOM05D002364 ORTHO05D002540 8.5e-24 113.2 74 67.6
SMO117G0140 Selaginella moellendorffii HOM05D002364 ORTHO05D002540 1.1e-23 112.8 74 71.6
CBR_g30030 Chara braunii HOM05D002364 ORTHO05D002540 2.5e-23 111.7 74 68.9
Oeu039672.2 Olea europaea HOM05D002364 ORTHO05D002540 4.2e-23 110.9 74 67.6
Cpa.g.sc165.15 Carica papaya HOM05D002364 ORTHO05D002540 5.5e-23 110.5 74 68.9
PSO832G3897 Papaver somniferum HOM05D002364 ORTHO05D002540 5.5e-23 110.5 74 67.6
Hma1.2p1_0576F.1_g181940 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 7.2e-23 110.2 74 67.6
MBI07_g16901_MAGBIO Magnolia biondii HOM05D002403 ORTHO05D002724 9.4e-23 109.8 74 66.2
Nn3g19697 Nelumbo nucifera HOM05D002364 ORTHO05D002540 9.4e-23 109.8 74 66.2
Nitab4.5_0006107g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 9.4e-23 109.8 74 67.6
Nitab4.5_0007062g0030 Nicotiana tabacum HOM05D002364 ORTHO05D002540 9.4e-23 109.8 74 67.6
CANSAT01G0103 Cannabis sativa HOM05D002364 ORTHO05D002540 1.2e-22 109.4 74 67.6
FvH4_2g21210 Fragaria vesca HOM05D002364 ORTHO05D002540 1.2e-22 109.4 74 67.6
FAN24G3112 Fragaria x ananassa HOM05D002364 ORTHO05D002540 1.2e-22 109.4 74 67.6
Manes.13G035500 Manihot esculenta HOM05D002364 ORTHO05D002540 1.2e-22 109.4 74 67.6
Ciclev10021562m.g Citrus clementina HOM05D002364 ORTHO05D002540 2.1e-22 108.6 74 67.6
TAR633G0449 Trochodendron aralioides HOM05D002364 ORTHO05D002540 2.1e-22 108.6 74 66.2
GSVIVG01028358001 Vitis vinifera HOM05D002364 ORTHO05D002540 2.1e-22 108.6 74 66.2
Peaxi162Scf00624g00314 Petunia axillaris HOM05D002364 ORTHO05D002540 2.7e-22 108.2 74 64.9
PGSC0003DMG400010315 Solanum tuberosum HOM05D002364 ORTHO05D002540 2.7e-22 108.2 74 66.2
CDE07G2052 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 3.6e-22 107.8 74 66.2
MSTRG.21483 Avicennia marina HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 66.2
CSS0042466 Camellia sinensis var. sinensis HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 66.2
COL.COLO4_04022 Corchorus olitorius HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 64.9
Lsat_1_v5_gn_9_10500 Lactuca sativa HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 64.9
PSO210G6351 Papaver somniferum HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 66.2
Sopen09g028220 Solanum pennellii HOM05D002364 ORTHO05D002540 4.7e-22 107.5 74 66.2
CDE04G0285 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
FAN15G1886 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
FAN20G2656 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
FAN27G1824 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
Manes.13G035700 Manihot esculenta HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
RcHm_v2.0_Chr6g0287711 Rosa chinensis HOM05D002364 ORTHO05D002540 6.1e-22 107.1 74 66.2
Atru.chr5.1730 Acer truncatum HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 64.9
ATR0736G205 Amborella trichopoda HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 66.2
MSTRG.18329 Avicennia marina HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 66.2
Nitab4.5_0000326g0150 Nicotiana tabacum HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 66.2
PGSC0003DMG401025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 64.9
PGSC0003DMG402025510 Solanum tuberosum HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 64.9
TWI18G0990 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 66.2
HPP92_008551 Vanilla planifolia HOM05D002364 ORTHO05D002540 8.0e-22 106.7 74 64.9
Eucgr.K03254 Eucalyptus grandis HOM05D002364 ORTHO05D002540 1.0e-21 106.3 74 64.9
Lsat_1_v5_gn_5_182881 Lactuca sativa HOM05D002364 ORTHO05D002540 1.0e-21 106.3 74 64.9
PGR044G1680 Punica granatum HOM05D002364 ORTHO05D002540 1.0e-21 106.3 74 66.2
SalBow4G1524 Salvia bowleyana HOM05D002364 ORTHO05D002540 1.0e-21 106.3 74 66.2
Aqoxy5G00208 Aquilegia oxysepala HOM05D002364 ORTHO05D002540 1.4e-21 105.9 74 64.9
Lj1A69G67 Lonicera japonica HOM05D002364 ORTHO05D002540 1.4e-21 105.9 74 66.2
MD10G1181300 Malus domestica HOM05D002364 ORTHO05D002540 1.4e-21 105.9 74 64.9
Migut.D00440 Erythranthe guttata HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
Gohir.A07G213780 Gossypium hirsutum HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 63.5
Gorai.001G254400 Gossypium raimondii HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 63.5
MD05G1194700 Malus domestica HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
Potri.002G036400 Populus trichocarpa HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
Prupe.8G221400 Prunus persica HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
Solyc06g008340.4 Solanum lycopersicum HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
TPR.G5923 Trifolium pratense HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 63.5
TWI75G1021 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 1.8e-21 105.5 74 64.9
Sabra05G0174800 Salix brachista HOM05D002364 ORTHO05D002540 2.3e-21 105.1 74 63.5
Lalb_Chr02g0152561 Lupinus albus HOM05D002364 ORTHO05D002540 3.0e-21 104.8 74 63.5
Potri.005G226400 Populus trichocarpa HOM05D002364 ORTHO05D002540 3.0e-21 104.8 74 63.5
TAR362G1303 Trochodendron aralioides HOM05D002364 ORTHO05D002540 3.0e-21 104.8 74 62.2
unitig_8.g3736 Utricularia gibba HOM05D002364 ORTHO05D002540 3.0e-21 104.8 74 64.9
Dinv34638 Davidia involucrata HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 64.9
Medtr1g069765 Medicago truncatula HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 63.5
Nitab4.5_0005593g0010 Nicotiana tabacum HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 63.5
Psat6g054200 Pisum sativum HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 63.5
VMungo0720G3189 Vigna mungo HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 63.5
Zm00001eb221890 Zea mays HOM05D002364 ORTHO05D002540 3.9e-21 104.4 74 64.9
Actinidia07306 Actinidia chinensis HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 62.2
CiPaw.03G266300 Carya illinoinensis HOM05D002364 ORTHO05D002540 5.2e-21 104.0 75 65.3
MELO3C012869.2 Cucumis melo HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 64.9
CsaV3_3G022120 Cucumis sativus L. HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 64.9
Gohir.D07G220100 Gossypium hirsutum HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 62.2
HanXRQChr16g0523891 Helianthus annuus HOM05D002364 ORTHO05D002540 5.2e-21 104.0 73 63.0
QL09p039635 Quercus lobata HOM05D002364 ORTHO05D002540 5.2e-21 104.0 75 64.0
Thecc.01G255800 Theobroma cacao HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 64.9
TWI12G0280 Tripterygium wilfordii HOM05D002364 ORTHO05D002540 5.2e-21 104.0 74 63.5
Ca_09671_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
DCAR_018494 Daucus carota HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
Gohir.A07G149900 Gossypium hirsutum HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
Gohir.D07G156200 Gossypium hirsutum HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
Gorai.001G179100 Gossypium raimondii HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
Phvul.007G191700 Phaseolus vulgaris HOM05D002364 ORTHO05D002540 6.7e-21 103.6 74 62.2
Cc01_g18190 Coffea canephora HOM05D002364 ORTHO05D002540 8.8e-21 103.2 74 62.2
Duzib138G1348 Durio zibethinus HOM05D002364 ORTHO05D002540 8.8e-21 103.2 74 62.2
Duzib211G0026 Durio zibethinus HOM05D002364 ORTHO05D002540 8.8e-21 103.2 74 62.2
HanXRQChr10g0280811 Helianthus annuus HOM05D002364 ORTHO05D002540 8.8e-21 103.2 74 62.2
Sopen06g003190 Solanum pennellii HOM05D002364 ORTHO05D002540 8.8e-21 103.2 74 63.5
AL1G13480 Arabidopsis lyrata HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
AT1G03900 Arabidopsis thaliana HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
C08p00830 Brassica napus HOM05D002403 ORTHO05D002724 1.1e-20 102.8 74 63.5
BolC8t46881H Brassica oleracea HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
BraA08t35616Z Brassica rapa HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
Carub.0001s0304 Capsella rubella HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
CARHR003220 Cardamine hirsuta HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 63.5
ClCG00G001490 Citrullus lanatus HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 64.9
ClCG07G001150 Citrullus lanatus HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 64.9
Glyma.13G124500 Glycine max HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 62.2
HanXRQChr15g0467691 Helianthus annuus HOM05D002364 ORTHO05D002540 1.1e-20 102.8 74 62.2
Sed0010821 Sechium edule HOM05D002364 ORTHO05D002540 1.5e-20 102.4 74 63.5
arahy.Tifrunner.gnm1.ann1.47VIJ3 Arachis hypogaea HOM05D002364 ORTHO05D002540 2.6e-20 101.7 74 59.5
arahy.Tifrunner.gnm1.ann1.S0A29X Arachis hypogaea HOM05D002364 ORTHO05D002540 2.6e-20 101.7 74 59.5
Lj5g0013714 Lotus japonicus HOM05D002364 ORTHO05D002540 2.6e-20 101.7 74 62.2
Os10g0476000 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 2.6e-20 101.7 74 62.2
SGA_v2.0_scaffold6G03209 Striga asiatica HOM05D002364 ORTHO05D002540 2.6e-20 101.7 74 62.2
A08p37160 Brassica napus HOM05D002403 ORTHO05D002724 3.3e-20 101.3 74 62.2
Lalb_Chr21g0313971 Lupinus albus HOM05D002364 ORTHO05D002540 3.3e-20 101.3 74 62.2
Sed0018557 Sechium edule HOM05D002364 ORTHO05D002540 3.3e-20 101.3 74 62.2
CiPaw.04G187900 Carya illinoinensis HOM05D002364 ORTHO05D002540 4.4e-20 100.9 75 64.0
Sp1g02750 Schrenkiella parvula HOM05D002364 ORTHO05D002540 4.4e-20 100.9 74 62.2
THA.LOC104826045 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 5.7e-20 100.5 74 62.2
Cfa002444 Carpinus fangiana HOM05D002364 ORTHO05D002540 9.7e-20 99.8 75 62.7
Haze_24665 Corylus avellana HOM05D002364 ORTHO05D002540 9.7e-20 99.8 75 62.7
Glyma.10G038100 Glycine max HOM05D002364 ORTHO05D002540 9.7e-20 99.8 74 60.8
Ah.02g112020 Amaranthus hybridus HOM05D002364 ORTHO05D002540 1.3e-19 99.4 74 62.2
AUR62011857 Chenopodium quinoa HOM05D002364 ORTHO05D002540 1.7e-19 99.0 74 62.2
AUR62024702 Chenopodium quinoa HOM05D002364 ORTHO05D002540 1.7e-19 99.0 74 62.2
BcaC05g24487 Brassica carinata HOM05D002364 ORTHO05D002540 2.2e-19 98.6 74 60.8
BcaC05g24490 Brassica carinata HOM05D002364 ORTHO05D002540 2.2e-19 98.6 74 60.8
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 2.2e-19 98.6 74 60.8
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 2.2e-19 98.6 74 60.8
BolC5t29002H Brassica oleracea HOM05D002364 ORTHO05D002540 2.2e-19 98.6 74 60.8
BraA10t42512Z Brassica rapa HOM05D002364 ORTHO05D002540 2.2e-19 98.6 74 60.8
THA.LOC104801150 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 2.2e-19 98.6 74 62.2
vmacro02675 Vaccinium macrocarpon HOM05D002364 ORTHO05D002540 2.8e-19 98.2 76 63.2
Rhsim13G0036200 Rhododendron simsii HOM05D002364 ORTHO05D002540 3.7e-19 97.8 77 62.3
Hund09609 Selenicereus undatus HOM05D002364 ORTHO05D002540 3.7e-19 97.8 74 60.8
Aa31LG5G3150 Aethionema arabicum HOM05D002364 ORTHO05D002540 4.8e-19 97.4 74 62.2
SGA_v2.0_scaffold6G03211 Striga asiatica HOM05D002364 ORTHO05D002540 8.2e-19 96.7 74 59.5
CAN.G1855.1 Capsicum annuum HOM05D002364 ORTHO05D002540 1.1e-18 96.3 66 65.2
Sp2g08940 Schrenkiella parvula HOM05D002364 ORTHO05D002540 1.4e-18 95.9 74 60.8
Sc05g0000640 Simmondsia chinensis HOM05D002364 ORTHO05D002540 1.8e-18 95.5 74 59.5
EL10As5g23478 Beta vulgaris HOM05D002364 ORTHO05D002540 2.4e-18 95.1 74 58.1
Hma1.2p1_0046F.1_g027630 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 6.5e-16 87.0 66 57.6
Hma1.2p1_0548F.1_g176655 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 6.5e-16 87.0 66 57.6
Nn1g06880 Nelumbo nucifera HOM05D002364 ORTHO05D002540 2.3e-13 78.6 74 52.7
ECA247G3608 Erigeron canadensis HOM05D002364 ORTHO05D002540 3.0e-13 78.2 58 63.8
PRCOL_00004416 Prasinoderma coloniale HOM05D002364 ORTHO05D002540 7.5e-12 73.6 75 45.3
RcHm_v2.0_Chr7g0209161 Rosa chinensis HOM05D002364 ORTHO05D002540 9.7e-12 73.2 55 60.0
RhsimUnG0084200 Rhododendron simsii HOM05D002364 ORTHO05D338518 4.5e-09 64.3 56 55.4
CBR_g11118 Chara braunii HOM05D002364 ORTHO05D002540 7.7e-09 63.5 74 43.2
Sed0010986 Sechium edule HOM05D002364 ORTHO05D002540 3.8e-08 61.2 73 39.7
ATR0602G063 Amborella trichopoda HOM05D002364 ORTHO05D002540 1.1e-07 59.7 73 41.1
SEGI_40426 Sequoiadendron giganteum HOM05D002364 ORTHO05D002540 1.1e-07 59.7 72 44.4
FAN09G3060 Fragaria x ananassa HOM05D002364 ORTHO05D002540 1.5e-07 59.3 73 39.7
Gohir.A11G060300 Gossypium hirsutum HOM05D002364 ORTHO05D002540 2.5e-07 58.5 73 38.4
Gohir.D11G064400 Gossypium hirsutum HOM05D002364 ORTHO05D002540 2.5e-07 58.5 73 38.4
Gorai.007G069600 Gossypium raimondii HOM05D002364 ORTHO05D002540 2.5e-07 58.5 73 38.4
FvH4_6g27130 Fragaria vesca HOM05D002364 ORTHO05D002540 3.2e-07 58.2 73 38.4
FAN14G0453 Fragaria x ananassa HOM05D002364 ORTHO05D002540 3.2e-07 58.2 73 38.4
Lalb_Chr14g0367411 Lupinus albus HOM05D002364 ORTHO05D002540 3.2e-07 58.2 73 39.7
Lalb_Chr22g0356871 Lupinus albus HOM05D002364 ORTHO05D002540 7.2e-07 57.0 73 39.7
Pp3c15_9330 Physcomitrium patens HOM05D002364 ORTHO05D002540 9.4e-07 56.6 73 37.0
Lj3g0014209 Lotus japonicus HOM05D002364 ORTHO05D002540 1.2e-06 56.2 73 39.7
Medtr2g091185 Medicago truncatula HOM05D002364 ORTHO05D002540 1.6e-06 55.8 73 39.7
Os01g0614700 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 1.6e-06 55.8 73 38.4
Psat5g275280 Pisum sativum HOM05D002364 ORTHO05D002540 1.6e-06 55.8 73 39.7
CAN.G456.27 Capsicum annuum HOM05D002364 ORTHO05D002540 2.1e-06 55.5 73 38.4
Ca_01461_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 2.1e-06 55.5 73 38.4
Peaxi162Scf00469g00131 Petunia axillaris HOM05D002364 ORTHO05D002540 2.1e-06 55.5 73 38.4
SGA_v2.0_scaffold201G41363 Striga asiatica HOM05D002364 ORTHO05D002540 2.7e-06 55.1 73 37.0
TPR.G11609 Trifolium pratense HOM05D002364 ORTHO05D002540 3.6e-06 54.7 73 38.4
Nitab4.5_0003827g0060 Nicotiana tabacum HOM05D002364 ORTHO05D002540 4.7e-06 54.3 73 37.0
Sopen07g027270 Solanum pennellii HOM05D002364 ORTHO05D002540 4.7e-06 54.3 73 37.0
PGSC0003DMG400020428 Solanum tuberosum HOM05D002364 ORTHO05D002540 4.7e-06 54.3 73 37.0
Rhsim12G0095200 Rhododendron simsii HOM05D002364 ORTHO05D002540 8.0e-06 53.5 40 57.5
Solyc07g053310.3 Solanum lycopersicum HOM05D002364 ORTHO05D002540 8.0e-06 53.5 73 37.0


User provided reference genes

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