Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.6e-282 973.4 498 100.0
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.3e-172 609.0 492 67.1
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 8.8e-117 424.9 345 62.6
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 1.9e-111 407.1 343 59.8
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.2e-110 404.4 343 60.1
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 1.4e-109 401.0 343 58.9
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.0e-108 397.1 339 59.3
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.0e-108 397.1 343 57.4
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 3.3e-108 396.4 343 57.4
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.3e-108 396.4 344 57.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 7.4e-108 395.2 339 56.9
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 9.7e-108 394.8 369 55.3
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 1.7e-107 394.0 363 54.3
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.7e-107 394.0 344 57.6
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.2e-107 393.7 343 56.6
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.2e-107 393.7 363 54.3
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.7e-107 392.9 363 54.0
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 4.8e-107 392.5 344 56.4
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 4.8e-107 392.5 310 63.9
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.8e-107 392.5 332 59.3
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 8.2e-107 391.7 343 57.7
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 8.2e-107 391.7 346 57.2
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 8.2e-107 391.7 343 56.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 8.2e-107 391.7 346 55.5
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.1e-106 391.3 343 56.3
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.1e-106 391.3 363 54.3
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.8e-106 390.6 343 57.4
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.8e-106 390.6 351 56.7
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 2.4e-106 390.2 343 56.9
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.4e-106 390.2 343 56.3
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.1e-106 389.8 343 57.4
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 5.3e-106 389.0 344 56.4
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 7.0e-106 388.7 344 56.7
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 7.0e-106 388.7 332 58.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 9.1e-106 388.3 337 56.7
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 1.6e-105 387.5 346 57.5
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.6e-105 387.5 340 56.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.0e-105 387.1 340 56.5
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.6e-105 386.7 343 55.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.5e-105 386.3 343 55.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 4.5e-105 386.0 343 56.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 7.7e-105 385.2 344 56.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.7e-105 385.2 342 55.6
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 7.7e-105 385.2 346 56.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 7.7e-105 385.2 346 56.9
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 7.7e-105 385.2 380 51.8
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.0e-104 384.8 343 56.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.7e-104 384.0 346 56.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 1.7e-104 384.0 344 57.6
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 1.7e-104 384.0 345 55.1
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.2e-104 383.6 344 56.7
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 2.2e-104 383.6 346 56.4
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 3.8e-104 382.9 346 56.9
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 1.1e-103 381.3 335 57.3
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-103 381.3 338 58.9
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 1.5e-103 380.9 368 53.3
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 1.5e-103 380.9 368 53.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.5e-103 380.2 343 55.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.2e-103 379.8 344 55.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 3.2e-103 379.8 344 55.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 3.2e-103 379.8 344 54.9
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 5.5e-103 379.0 344 56.7
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 7.2e-103 378.6 344 55.5
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 9.4e-103 378.3 344 55.5
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.2e-102 377.9 346 54.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.2e-102 377.9 334 56.6
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.6e-102 377.5 344 55.2
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.1e-102 377.1 344 55.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 3.6e-102 376.3 344 54.9
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 3.6e-102 376.3 340 56.5
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 6.1e-102 375.6 344 55.5
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 8.0e-102 375.2 350 55.7
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.0e-101 374.8 344 54.7
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 1.0e-101 374.8 345 55.4
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.4e-101 374.4 328 57.0
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.8e-101 374.0 346 54.3
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 3.0e-101 373.2 344 54.7
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 3.0e-101 373.2 344 54.7
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 4.0e-101 372.9 345 55.7
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 5.2e-101 372.5 308 59.4
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 5.2e-101 372.5 343 53.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 6.7e-101 372.1 343 53.9
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 6.7e-101 372.1 318 58.5
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.5e-100 370.9 347 55.3
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 2.0e-100 370.5 345 54.2
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 2.6e-100 370.2 343 54.8
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.6e-100 370.2 344 54.7
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 2.6e-100 370.2 346 54.6
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 2.6e-100 370.2 344 54.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.3e-100 369.8 336 55.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.3e-100 369.8 328 56.7
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 4.4e-100 369.4 333 55.9
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 2.2e-99 367.1 342 54.1
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.2e-99 367.1 344 54.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 4.8e-99 365.9 346 54.3
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 4.8e-99 365.9 408 47.5
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 8.2e-99 365.2 363 52.6
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 8.2e-99 365.2 331 55.6
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.1e-98 364.8 364 51.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.4e-98 364.4 333 56.2
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 2.4e-98 363.6 342 53.2
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 3.1e-98 363.2 346 53.8
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 3.1e-98 363.2 335 56.1
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 3.1e-98 363.2 328 56.1
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 9.1e-98 361.7 354 53.7
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 9.1e-98 361.7 344 53.8
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 9.1e-98 361.7 330 55.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.6e-97 360.9 346 54.0
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-97 360.5 346 54.0
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 2.0e-97 360.5 346 54.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 4.5e-97 359.4 344 53.2
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.9e-97 359.0 344 53.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.5e-95 354.4 331 55.0
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 7.2e-95 352.1 350 49.7
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 3.4e-92 343.2 338 52.4
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 4.4e-92 342.8 331 54.4
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 9.8e-92 341.7 300 56.3
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 6.3e-91 339.0 291 58.4
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.8e-88 329.7 291 56.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 7.2e-87 325.5 346 50.3
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.8e-82 310.8 289 56.7
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.0e-82 308.9 302 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.6e-81 307.8 307 50.5
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.2e-77 292.7 287 50.2
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.2e-76 291.6 295 49.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.6e-73 281.2 289 50.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.6e-72 275.4 287 48.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.6e-70 270.0 332 44.3
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-69 268.5 287 47.0
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.2e-67 260.8 292 44.9
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-67 260.4 344 39.8
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 9.2e-66 255.4 306 42.8
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 9.2e-66 255.4 345 42.3
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.3e-64 250.8 267 47.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 8.6e-64 248.8 343 42.0
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 3.6e-62 243.4 217 55.8
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 4.0e-61 240.0 217 55.3
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.2e-57 228.4 328 40.9
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 1.9e-55 221.1 319 40.1
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.2e-54 218.4 356 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.4e-51 205.7 153 61.4
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.9e-47 194.5 298 38.3
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.4e-45 187.6 175 49.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.9e-45 186.0 164 57.9
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-44 184.9 207 44.9
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 3.8e-43 180.3 158 62.0
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.9e-42 177.9 161 58.4
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.4e-42 177.6 301 34.6
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 3.5e-41 173.7 154 58.4
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 2.3e-40 171.0 215 44.7
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.3e-39 166.8 303 32.0
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-38 164.9 300 36.0
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.4e-37 161.8 300 36.3
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.0e-37 160.2 330 33.9
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 9.0e-37 159.1 310 34.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.6e-36 157.5 136 56.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 9.9e-36 155.6 138 55.8
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.1e-34 152.1 318 33.6
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-30 138.3 121 59.5
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.2e-30 136.3 290 32.1
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 7.6e-28 129.4 306 29.4
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-27 127.9 290 31.7
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.9e-27 127.5 192 38.5
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.5e-26 123.2 101 53.5
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.1e-25 121.3 76 71.1
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.0e-24 117.5 284 30.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 3.3e-23 114.0 333 27.6
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.6e-22 111.7 319 27.9
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 8.1e-22 109.4 219 31.1
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 7.1e-18 96.3 80 60.0
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 9.3e-18 95.9 300 26.3
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.6e-17 95.1 337 25.5
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.0e-16 90.9 118 39.8
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.5e-15 88.6 293 26.3
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 5.7e-15 86.7 76 55.3
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.5e-12 78.6 148 33.8
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 3.3e-07 60.8 85 45.9
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-06 58.9 90 37.8


User provided reference genes

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