Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_15740 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.2e-269 932.6 467 100.0
Pp3c26_4170 Physcomitrium patens HOM05D003702 ORTHO05D004653 1.8e-180 636.3 392 74.5
Mapoly0057s0110 Marchantia polymorpha HOM05D003702 ORTHO05D004653 4.4e-179 631.7 386 73.3
CiPaw.05G244900 Carya illinoinensis HOM05D003702 ORTHO05D004653 7.3e-174 614.4 381 72.2
arahy.Tifrunner.gnm1.ann1.A779NY Arachis hypogaea HOM05D003702 ORTHO05D004653 1.6e-173 613.2 376 72.3
Sc04g0005900 Simmondsia chinensis HOM05D003702 ORTHO05D004653 2.8e-173 612.5 381 71.9
FvH4_4g26430 Fragaria vesca HOM05D003702 ORTHO05D004653 1.1e-172 610.5 375 72.5
FAN07G0957 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-172 610.5 375 72.8
FAN17G2320 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-172 610.5 375 72.8
FAN22G0804 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.1e-172 610.5 375 72.8
Ciclev10015341m.g Citrus clementina HOM05D003702 ORTHO05D004653 1.4e-172 610.1 381 71.4
Thecc.02G215000 Theobroma cacao HOM05D003702 ORTHO05D004653 1.4e-172 610.1 378 72.0
Prupe.1G319700 Prunus persica HOM05D003702 ORTHO05D004653 1.8e-172 609.8 375 72.5
Duzib268G1865 Durio zibethinus HOM05D003702 ORTHO05D004653 2.4e-172 609.4 378 72.0
Glyma.10G268300 Glycine max HOM05D003702 ORTHO05D004653 2.4e-172 609.4 389 70.7
RcHm_v2.0_Chr4g0434061 Rosa chinensis HOM05D003702 ORTHO05D004653 2.4e-172 609.4 376 71.3
Duzib248G1136 Durio zibethinus HOM05D003702 ORTHO05D004653 5.2e-172 608.2 378 71.7
MD13G1033100 Malus domestica HOM05D003702 ORTHO05D004653 6.8e-172 607.8 363 74.1
Nn4g24020 Nelumbo nucifera HOM05D003702 ORTHO05D004653 6.8e-172 607.8 363 74.4
Nitab4.5_0000350g0060 Nicotiana tabacum HOM05D003702 ORTHO05D004653 6.8e-172 607.8 366 73.2
GSVIVG01011808001 Vitis vinifera HOM05D003702 ORTHO05D004653 6.8e-172 607.8 385 70.6
CSS0038999 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 8.9e-172 607.4 394 69.5
Gohir.A12G141400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 8.9e-172 607.4 378 72.2
Gohir.D12G146300 Gossypium hirsutum HOM05D003702 ORTHO05D004653 8.9e-172 607.4 378 72.2
Gorai.008G157600 Gossypium raimondii HOM05D003702 ORTHO05D004653 8.9e-172 607.4 378 72.2
MD16G1035000 Malus domestica HOM05D003702 ORTHO05D004653 8.9e-172 607.4 379 72.3
VMungo0720G1815 Vigna mungo HOM05D003702 ORTHO05D004653 1.2e-171 607.1 388 70.9
CAN.G139.1 Capsicum annuum HOM05D003702 ORTHO05D004653 1.5e-171 606.7 383 70.0
CiPaw.06G015200 Carya illinoinensis HOM05D003702 ORTHO05D004653 1.5e-171 606.7 393 70.7
Peaxi162Scf00897g00114 Petunia axillaris HOM05D003702 ORTHO05D004653 1.5e-171 606.7 375 71.5
Ah.05g167700 Amaranthus hybridus HOM05D003702 ORTHO05D004653 2.0e-171 606.3 363 74.9
MELO3C005332.2 Cucumis melo HOM05D003702 ORTHO05D004653 2.0e-171 606.3 379 71.5
COL.COLO4_38548 Corchorus olitorius HOM05D003702 ORTHO05D004653 2.6e-171 605.9 378 71.4
DCAR_030184 Daucus carota HOM05D003702 ORTHO05D004653 3.4e-171 605.5 375 71.5
Gohir.D09G004400 Gossypium hirsutum HOM05D003702 ORTHO05D004653 3.4e-171 605.5 378 71.7
Oeu031392.1 Olea europaea HOM05D003702 ORTHO05D004653 3.4e-171 605.5 366 72.7
PGR102G2387 Punica granatum HOM05D003702 ORTHO05D004653 3.4e-171 605.5 363 73.8
Cc11_g09310 Coffea canephora HOM05D003702 ORTHO05D004653 4.4e-171 605.1 389 69.7
Lj6A750T93 Lonicera japonica HOM05D003702 ORTHO05D004653 4.4e-171 605.1 363 73.8
Gohir.A09G005100 Gossypium hirsutum HOM05D003702 ORTHO05D004653 5.8e-171 604.7 376 71.5
Dinv04909 Davidia involucrata HOM05D003702 ORTHO05D004653 7.6e-171 604.4 376 71.0
Cfa015818 Carpinus fangiana HOM05D003702 ORTHO05D004653 9.9e-171 604.0 375 71.7
Gorai.006G006000 Gossypium raimondii HOM05D003702 ORTHO05D004653 9.9e-171 604.0 378 71.4
Manes.14G109300 Manihot esculenta HOM05D003702 ORTHO05D004653 9.9e-171 604.0 367 73.0
Potri.008G126100 Populus trichocarpa HOM05D003702 ORTHO05D004653 9.9e-171 604.0 362 73.5
Glyma.20G122800 Glycine max HOM05D003702 ORTHO05D004653 1.3e-170 603.6 389 70.2
TAR371G0966 Trochodendron aralioides HOM05D003702 ORTHO05D004653 1.3e-170 603.6 376 71.0
THA.LOC104805051 Tarenaya hassleriana HOM05D003702 ORTHO05D004653 1.7e-170 603.2 363 73.0
Phvul.007G034000 Phaseolus vulgaris HOM05D003702 ORTHO05D004653 2.2e-170 602.8 389 69.9
Sopen05g004420 Solanum pennellii HOM05D003702 ORTHO05D004653 3.8e-170 602.1 366 72.4
EL10Ac1g01504 Beta vulgaris HOM05D003702 ORTHO05D004653 4.9e-170 601.7 363 74.7
CAN.G1489.18 Capsicum annuum HOM05D003702 ORTHO05D004653 4.9e-170 601.7 366 71.9
Solyc05g008580.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 4.9e-170 601.7 366 72.4
PGSC0003DMG400030564 Solanum tuberosum HOM05D003702 ORTHO05D004653 6.4e-170 601.3 366 72.4
QL01p003075 Quercus lobata HOM05D003702 ORTHO05D004653 8.4e-170 600.9 387 70.3
Ca_30213_v3 Cicer arietinum L. HOM05D003702 ORTHO05D004653 1.1e-169 600.5 361 74.5
Eucgr.B02865 Eucalyptus grandis HOM05D003702 ORTHO05D004653 1.1e-169 600.5 370 72.2
Lalb_Chr21g0308661 Lupinus albus HOM05D003702 ORTHO05D004653 1.1e-169 600.5 361 74.2
HanXRQChr17g0553131 Helianthus annuus HOM05D003702 ORTHO05D004653 1.4e-169 600.1 363 71.6
Sc14g0007250 Simmondsia chinensis HOM05D003702 ORTHO05D004653 1.4e-169 600.1 375 71.7
Aqoxy5G03879 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.9e-169 599.7 363 73.0
HanXRQChr14g0459241 Helianthus annuus HOM05D003702 ORTHO05D004653 2.4e-169 599.4 402 67.2
Nitab4.5_0004597g0050 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.4e-169 599.4 362 72.7
Potri.010G117500 Populus trichocarpa HOM05D003702 ORTHO05D004653 2.4e-169 599.4 366 72.1
SalBow8G2252 Salvia bowleyana HOM05D003702 ORTHO05D004653 2.4e-169 599.4 383 68.9
CsaV3_5G028680 Cucumis sativus L. HOM05D003702 ORTHO05D004653 3.2e-169 599.0 379 70.7
Sabra08G0095000 Salix brachista HOM05D003702 ORTHO05D004653 4.2e-169 598.6 363 72.7
Atru.chr11.329 Acer truncatum HOM05D003702 ORTHO05D004653 7.1e-169 597.8 367 72.8
ATR0691G123 Amborella trichopoda HOM05D003702 ORTHO05D004653 9.3e-169 597.4 365 72.6
AL1G27170 Arabidopsis lyrata HOM05D003702 ORTHO05D004653 9.3e-169 597.4 390 68.2
Migut.E00388 Erythranthe guttata HOM05D003702 ORTHO05D004653 1.2e-168 597.0 375 69.9
Lj5g0010985 Lotus japonicus HOM05D003702 ORTHO05D004653 1.2e-168 597.0 376 71.0
MBI10_g06746_MAGBIO Magnolia biondii HOM05D003702 ORTHO05D004653 1.6e-168 596.7 353 73.9
AT1G15110 Arabidopsis thaliana HOM05D003702 ORTHO05D004653 2.1e-168 596.3 391 68.3
Thhalv10007726m.g Eutrema salsugineum HOM05D003702 ORTHO05D004653 2.7e-168 595.9 371 70.6
PSO017G5274 Papaver somniferum HOM05D003702 ORTHO05D004653 2.7e-168 595.9 380 70.5
MSTRG.2203 Avicennia marina HOM05D003702 ORTHO05D004653 4.6e-168 595.1 374 70.6
A09p61570 Brassica napus HOM05D003702 ORTHO05D004653 4.6e-168 595.1 366 71.6
TWI75G1265 Tripterygium wilfordii HOM05D003702 ORTHO05D004653 4.6e-168 595.1 392 68.4
BcaB02g06576 Brassica carinata HOM05D003702 ORTHO05D004653 6.0e-168 594.7 379 69.7
CARHR015630 Cardamine hirsuta HOM05D003702 ORTHO05D004653 6.0e-168 594.7 391 68.3
Lsat_1_v5_gn_8_41841 Lactuca sativa HOM05D003702 ORTHO05D004653 6.0e-168 594.7 377 69.0
arahy.Tifrunner.gnm1.ann1.8F881C Arachis hypogaea HOM05D003702 ORTHO05D004653 7.8e-168 594.3 366 72.1
PSO478G4444 Papaver somniferum HOM05D003702 ORTHO05D004653 7.8e-168 594.3 380 70.5
FAN12G3413 Fragaria x ananassa HOM05D003702 ORTHO05D004653 1.0e-167 594.0 366 72.7
Lalb_Chr02g0145651 Lupinus albus HOM05D003702 ORTHO05D004653 1.0e-167 594.0 392 69.6
Carub.0001s1487 Capsella rubella HOM05D003702 ORTHO05D004653 1.3e-167 593.6 390 67.7
MSTRG.7632 Avicennia marina HOM05D003702 ORTHO05D004653 1.7e-167 593.2 363 73.3
Solyc04g007520.3 Solanum lycopersicum HOM05D003702 ORTHO05D004653 1.7e-167 593.2 370 70.3
Sopen04g002600 Solanum pennellii HOM05D003702 ORTHO05D004653 1.7e-167 593.2 370 70.3
Medtr1g109120 Medicago truncatula HOM05D003702 ORTHO05D004653 3.9e-167 592.0 368 72.8
BcaC05g25442 Brassica carinata HOM05D003702 ORTHO05D004653 5.1e-167 591.7 365 71.5
BcaNung05515 Brassica carinata HOM05D003702 ORTHO05D004653 5.1e-167 591.7 379 68.9
C08p45160 Brassica napus HOM05D003702 ORTHO05D004653 5.1e-167 591.7 379 68.9
ECA233G3005 Erigeron canadensis HOM05D003702 ORTHO05D004653 5.1e-167 591.7 363 71.3
Sp1g13450 Schrenkiella parvula HOM05D003702 ORTHO05D004653 8.7e-167 590.9 379 68.6
Sed0016261 Sechium edule HOM05D003702 ORTHO05D004653 8.7e-167 590.9 367 71.1
Zm00001eb343120 Zea mays HOM05D003702 ORTHO05D004653 1.1e-166 590.5 363 73.3
Haze_00678 Corylus avellana HOM05D003702 ORTHO05D004653 1.5e-166 590.1 400 67.2
TPR.G4874 Trifolium pratense HOM05D003702 ORTHO05D004653 1.9e-166 589.7 352 75.3
FAN12G0213 Fragaria x ananassa HOM05D003702 ORTHO05D004653 2.5e-166 589.3 364 72.5
GSVIVG01008367001 Vitis vinifera HOM05D003702 ORTHO05D004653 7.3e-166 587.8 376 69.4
Os05g0554400 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 9.6e-166 587.4 363 73.6
Peaxi162Scf00205g01127 Petunia axillaris HOM05D003702 ORTHO05D004653 2.8e-165 585.9 403 66.3
Manes.06G063400 Manihot esculenta HOM05D003702 ORTHO05D004653 3.6e-165 585.5 354 72.6
CsaV3_5G034740 Cucumis sativus L. HOM05D003702 ORTHO05D004653 4.8e-165 585.1 399 66.2
C05p13230 Brassica napus HOM05D003702 ORTHO05D004653 6.2e-165 584.7 359 71.6
BolC5t30060H Brassica oleracea HOM05D003702 ORTHO05D004653 6.2e-165 584.7 359 71.6
BraA09t41530Z Brassica rapa HOM05D003702 ORTHO05D004653 8.1e-165 584.3 354 72.3
MELO3C012286.2 Cucumis melo HOM05D003702 ORTHO05D004653 8.1e-165 584.3 399 66.2
A06p11110 Brassica napus HOM05D003702 ORTHO05D004653 1.8e-164 583.2 359 71.3
BraA06t24290Z Brassica rapa HOM05D003702 ORTHO05D004653 1.8e-164 583.2 359 71.3
Nitab4.5_0003886g0040 Nicotiana tabacum HOM05D003702 ORTHO05D004653 4.0e-164 582.0 351 73.5
MSTRG.874 Avicennia marina HOM05D003702 ORTHO05D004653 9.0e-164 580.9 375 69.3
BolC8t52064H Brassica oleracea HOM05D003702 ORTHO05D004653 9.0e-164 580.9 367 69.5
ECA246G4421 Erigeron canadensis HOM05D003702 ORTHO05D004653 9.0e-164 580.9 363 69.7
Oeu036128.1 Olea europaea HOM05D003702 ORTHO05D004653 1.5e-163 580.1 357 72.3
Nitab4.5_0000881g0100 Nicotiana tabacum HOM05D003702 ORTHO05D004653 2.0e-163 579.7 377 69.8
Zm00001eb295120 Zea mays HOM05D003702 ORTHO05D004653 2.6e-163 579.3 395 67.8
Sed0021449 Sechium edule HOM05D003702 ORTHO05D004653 3.4e-163 578.9 424 63.2
Zm00001eb334750 Zea mays HOM05D003702 ORTHO05D004653 7.6e-163 577.8 366 70.5
Sabra10G0086900 Salix brachista HOM05D003702 ORTHO05D004653 9.9e-163 577.4 404 64.9
Sabra10G0088500 Salix brachista HOM05D003702 ORTHO05D004653 9.9e-163 577.4 404 64.9
Lalb_Chr06g0165751 Lupinus albus HOM05D003702 ORTHO05D004653 1.4e-161 573.5 371 69.5
Rhsim09G0102000 Rhododendron simsii HOM05D003702 ORTHO05D004653 1.4e-161 573.5 384 68.0
AagrBONN_evm.TU.Sc2ySwM_117.3898 Anthoceros agrestis HOM05D003702 ORTHO05D004653 2.7e-160 569.3 321 80.7
Lsat_1_v5_gn_3_56601 Lactuca sativa HOM05D003702 ORTHO05D004653 7.8e-160 567.8 371 67.9
BcaB03g14561 Brassica carinata HOM05D003702 ORTHO05D004653 3.8e-154 548.9 340 71.8
CDE07G1100 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.4e-153 546.2 324 74.1
Dinv16161 Davidia involucrata HOM05D003702 ORTHO05D004653 2.4e-153 546.2 341 70.4
AUR62037259 Chenopodium quinoa HOM05D003702 ORTHO05D004653 2.1e-152 543.1 354 70.3
vmacro12220 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 2.7e-152 542.7 440 59.1
ClCG01G006000 Citrullus lanatus HOM05D003702 ORTHO05D004653 3.0e-151 539.3 342 70.2
Psat6g222840 Pisum sativum HOM05D003702 ORTHO05D004653 3.9e-151 538.9 324 74.1
HPP92_026069 Vanilla planifolia HOM05D003702 ORTHO05D004653 5.1e-151 538.5 374 64.4
Migut.L01016 Erythranthe guttata HOM05D003702 ORTHO05D004653 4.3e-150 535.4 375 65.6
Sed0022429 Sechium edule HOM05D003702 ORTHO05D004653 2.8e-149 532.7 310 76.1
vmacro10616 Vaccinium macrocarpon HOM05D003702 ORTHO05D004653 2.2e-146 523.1 460 55.4
SalBow8G5575 Salvia bowleyana HOM05D003702 ORTHO05D004653 6.5e-146 521.5 400 62.8
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 8.4e-146 521.2 384 62.5
CDE06G0787 Ceratophyllum demersum HOM05D003702 ORTHO05D004653 2.1e-144 516.5 365 64.4
unitig_746.g26864 Utricularia gibba HOM05D003702 ORTHO05D004653 4.6e-144 515.4 403 60.3
Zm00001eb125990 Zea mays HOM05D003702 ORTHO05D004653 2.3e-143 513.1 313 72.8
HPP92_008281 Vanilla planifolia HOM05D003702 ORTHO05D004653 1.4e-140 503.8 359 63.0
Hund20721 Selenicereus undatus HOM05D003702 ORTHO05D004653 9.3e-137 491.1 290 73.8
SGA_v2.0_scaffold14G06919 Striga asiatica HOM05D003702 ORTHO05D004653 6.9e-132 474.9 375 60.5
SGA_v2.0_scaffold170G38819 Striga asiatica HOM05D003702 ORTHO05D004653 7.0e-116 421.8 378 55.8
ClCG05G022350 Citrullus lanatus HOM05D003702 ORTHO05D004653 2.5e-113 413.3 378 54.5
HPP92_021847 Vanilla planifolia HOM05D003702 ORTHO05D004653 8.0e-112 408.3 332 59.0
TAR629G3334 Trochodendron aralioides HOM05D003702 ORTHO05D004653 4.8e-109 399.1 271 67.2
Sed0018132 Sechium edule HOM05D003702 ORTHO05D004653 9.4e-105 384.8 289 63.3
Duzib251G0696 Durio zibethinus HOM05D003702 ORTHO05D004653 7.5e-102 375.2 339 53.4
Oeu048389.1 Olea europaea HOM05D003702 ORTHO05D004653 2.5e-97 360.1 223 70.0
AUR62002771 Chenopodium quinoa HOM05D003702 ORTHO05D004653 1.3e-93 347.8 200 76.5
Aqoxy6G00508 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.8e-92 344.0 200 74.0
Actinidia16697 Actinidia chinensis HOM05D003702 ORTHO05D004653 3.5e-91 339.7 389 47.3
SMO116G0260 Selaginella moellendorffii HOM05D003702 ORTHO05D004653 1.5e-89 334.3 218 69.7
MCO02G069 Micromonas commoda HOM05D003702 ORTHO05D004653 9.8e-86 321.6 302 49.7
Zm00001eb103650 Zea mays HOM05D003702 ORTHO05D004653 1.7e-82 310.8 184 76.1
CSS0044058 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 6.6e-66 255.8 154 72.7
Cpa.g.sc65.87 Carica papaya HOM05D003702 ORTHO05D004653 9.6e-57 225.3 148 68.9
Aqoxy7G02147 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.7e-56 223.0 126 73.8
Zm00001eb335270 Zea mays HOM05D003702 ORTHO05D004653 4.0e-55 219.9 135 74.8
Os01g0118300 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 9.3e-52 208.8 135 70.4
CSS0004358 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 3.6e-48 196.8 112 75.9
Os01g0683550 Oryza sativa ssp. japonica HOM05D003702 ORTHO05D004653 1.2e-46 191.8 204 50.5
Aqoxy6G00509 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 4.2e-44 183.3 119 73.1
SEGI_02132 Sequoiadendron giganteum HOM05D003702 ORTHO05D004653 1.7e-37 161.4 114 65.8
CSS0043066 Camellia sinensis var. sinensis HOM05D003702 ORTHO05D004653 4.2e-36 156.8 114 62.3
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 1.2e-35 155.2 106 71.7
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 6.7e-34 149.4 89 75.3
Zm00001eb367010 Zea mays HOM05D003702 ORTHO05D004653 2.5e-28 131.0 90 71.1
PRCOL_00004560 Prasinoderma coloniale HOM05D003702 ORTHO05D004653 3.2e-28 130.6 201 35.3
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 1.3e-26 125.2 84 65.5
BolC5t33656H Brassica oleracea HOM05D003702 ORTHO05D014526 6.3e-24 116.3 100 58.0
C07p19070 Brassica napus HOM05D003702 ORTHO05D014526 1.8e-23 114.8 100 57.0
BolC7t42416H Brassica oleracea HOM05D003702 ORTHO05D014526 1.8e-23 114.8 100 57.0
C05p31130 Brassica napus HOM05D003702 ORTHO05D014526 5.3e-23 113.2 100 56.0
Aqoxy7G02189 Aquilegia oxysepala HOM05D003702 ORTHO05D004653 1.9e-20 104.8 145 39.3
BcaC07g40935 Brassica carinata HOM05D003702 ORTHO05D014526 1.9e-17 94.7 75 57.3
BolC4t27595H Brassica oleracea HOM05D003702 ORTHO05D014526 2.5e-17 94.4 96 50.0
BcaC01g03963 Brassica carinata HOM05D003702 ORTHO05D014526 4.3e-17 93.6 96 49.0
C08p39290 Brassica napus HOM05D003702 ORTHO05D014526 4.3e-17 93.6 96 49.0
BolC3t21317H Brassica oleracea HOM05D003702 ORTHO05D014526 2.4e-15 87.8 96 47.9
SHI16230 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-14 84.7 110 42.7
BcaC06g35173 Brassica carinata HOM05D005941 ORTHO05D007879 4.3e-09 67.0 58 53.4
BolC6t37169H Brassica oleracea HOM05D003702 ORTHO05D019976 5.7e-09 66.6 80 41.2


User provided reference genes

Program Settings