Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 5.2e-87 324.3 162 100.0
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.2e-38 163.7 160 51.2
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 1.7e-37 159.8 160 47.5
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 8.5e-37 157.5 161 50.3
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.9e-36 156.4 155 49.7
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 2.5e-36 156.0 161 49.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.2e-36 155.6 160 50.6
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.2e-36 155.2 161 49.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 4.2e-36 155.2 159 49.1
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.2e-36 154.5 159 48.4
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 9.4e-36 154.1 162 48.1
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 9.4e-36 154.1 161 46.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.2e-35 153.7 160 50.0
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.6e-35 153.3 163 47.2
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 2.1e-35 152.9 161 49.1
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 3.6e-35 152.1 161 50.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.6e-35 152.1 162 49.4
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.7e-35 151.8 163 47.9
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 6.1e-35 151.4 162 50.0
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 6.1e-35 151.4 164 45.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 7.9e-35 151.0 163 47.9
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 7.9e-35 151.0 134 56.0
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 1.0e-34 150.6 162 45.7
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.0e-34 150.6 162 47.5
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.4e-34 150.2 161 47.2
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 1.4e-34 150.2 162 48.1
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.4e-34 150.2 168 46.4
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.8e-34 149.8 161 47.2
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.8e-34 149.8 156 46.2
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.3e-34 149.4 167 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.3e-34 149.4 162 50.0
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 2.3e-34 149.4 158 46.2
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.3e-34 149.4 165 46.7
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.3e-34 149.4 162 45.1
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 3.0e-34 149.1 161 46.0
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 3.9e-34 148.7 159 49.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.9e-34 148.7 161 47.2
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 3.9e-34 148.7 156 46.8
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 3.9e-34 148.7 163 46.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 5.1e-34 148.3 164 45.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 5.1e-34 148.3 162 48.1
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 5.1e-34 148.3 162 47.5
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 5.1e-34 148.3 165 47.9
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.1e-34 148.3 165 44.8
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 6.7e-34 147.9 159 47.2
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.7e-34 147.9 168 47.0
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 6.7e-34 147.9 165 43.0
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 6.7e-34 147.9 156 45.5
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 8.8e-34 147.5 159 48.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 8.8e-34 147.5 161 47.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-33 147.1 160 50.0
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.1e-33 147.1 164 45.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.1e-33 147.1 165 47.3
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.1e-33 147.1 158 48.7
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.1e-33 147.1 164 44.5
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-33 146.7 165 47.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.5e-33 146.7 165 47.3
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.0e-33 146.4 164 46.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.0e-33 146.4 164 47.0
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-33 146.4 164 46.3
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 2.0e-33 146.4 161 47.2
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.6e-33 146.0 170 45.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.6e-33 146.0 162 47.5
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.6e-33 146.0 161 44.7
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-33 145.6 166 47.0
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.3e-33 145.6 161 45.3
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 3.3e-33 145.6 153 45.1
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.3e-33 145.6 164 44.5
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 4.4e-33 145.2 163 44.8
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.4e-33 145.2 158 47.5
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 4.4e-33 145.2 157 45.9
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 5.7e-33 144.8 165 46.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 7.4e-33 144.4 165 46.7
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 7.4e-33 144.4 164 43.9
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 9.7e-33 144.1 161 46.0
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 9.7e-33 144.1 161 45.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.3e-32 143.7 157 47.1
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.3e-32 143.7 161 44.7
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.3e-32 143.7 161 46.0
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.7e-32 143.3 157 45.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.7e-32 143.3 157 45.2
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.7e-32 143.3 157 45.2
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.7e-32 143.3 162 48.1
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.2e-32 142.9 165 45.5
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.2e-32 142.9 158 46.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.2e-32 142.9 164 45.7
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.8e-32 142.5 161 47.8
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.8e-32 142.5 166 44.0
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.8e-32 141.7 169 46.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 6.3e-32 141.4 156 48.7
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 6.3e-32 141.4 158 44.9
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 8.2e-32 141.0 163 44.2
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.4e-31 140.2 165 45.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.4e-31 140.2 157 44.6
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.4e-31 140.2 162 45.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.8e-31 139.8 156 42.9
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.4e-31 139.4 156 48.1
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.4e-31 139.4 158 43.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 2.4e-31 139.4 163 43.6
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.1e-31 139.0 158 44.9
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 7.0e-31 137.9 162 44.4
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 9.1e-31 137.5 163 42.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.2e-30 137.1 164 43.9
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 1.2e-30 137.1 156 44.2
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.6e-30 136.7 124 53.2
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 3.5e-30 135.6 146 45.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 4.5e-30 135.2 161 41.6
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.7e-29 133.3 129 51.9
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.1e-28 130.6 161 43.5
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.5e-28 130.2 154 42.2
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.5e-28 129.4 158 43.7
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.5e-28 129.4 156 42.3
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 4.2e-28 128.6 132 48.5
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 5.5e-28 128.3 119 49.6
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.2e-27 127.1 129 46.5
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-27 127.1 155 43.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.6e-27 126.7 158 40.5
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 2.1e-27 126.3 134 47.8
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.7e-27 125.9 115 51.3
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.7e-27 125.9 138 44.9
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.7e-27 125.9 138 44.9
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 6.7e-26 121.3 125 48.0
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 6.7e-26 121.3 115 53.0
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.5e-25 120.2 168 42.3
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.3e-25 119.0 161 42.2
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 5.7e-25 118.2 126 48.4
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 9.7e-25 117.5 125 48.8
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.8e-24 115.9 106 50.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 6.3e-24 114.8 120 49.2
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.0e-22 109.8 86 54.7
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.0e-21 107.5 89 51.7
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.5e-20 101.7 151 33.1
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 2.1e-19 99.8 142 38.7
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 6.8e-18 94.7 117 42.7
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 6.8e-18 94.7 66 54.5
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 2.0e-17 93.2 63 63.5
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.6e-17 92.8 61 62.3
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-16 89.7 163 38.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 2.8e-16 89.4 63 57.1
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-15 87.4 162 38.9
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-15 86.7 162 38.9
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.2e-14 84.0 63 61.9
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.0e-14 83.2 141 33.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 5.9e-14 81.6 158 36.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.7e-14 81.3 81 46.9
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.7e-13 80.1 114 36.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 1.2e-11 73.9 80 40.0
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 1.2e-09 67.4 110 33.6
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 2.0e-09 66.6 89 37.1
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 7.5e-09 64.7 105 34.3
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 2.2e-08 63.2 71 45.1
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.1e-07 60.8 80 42.5


User provided reference genes

Program Settings