Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_14700 Physcomitrium patens HOM05D007388 ORTHO05D009421 6.4e-123 444.1 230 100.0
Pp3c12_9640 Physcomitrium patens HOM05D007388 ORTHO05D009421 8.2e-102 374.0 230 82.6
ATR0598G070 Amborella trichopoda HOM05D007388 ORTHO05D009421 2.0e-23 113.6 146 43.8
Os12g0498500 Oryza sativa ssp. japonica HOM05D007388 ORTHO05D009421 6.4e-22 108.6 165 39.4
Cfa018015 Carpinus fangiana HOM05D007388 ORTHO05D009421 3.2e-21 106.3 174 39.1
CsaV3_4G036020 Cucumis sativus L. HOM05D007388 ORTHO05D009421 3.2e-21 106.3 188 38.3
Glyma.04G055400 Glycine max HOM05D007388 ORTHO05D009421 4.2e-21 105.9 203 37.9
Glyma.06G055600 Glycine max HOM05D007388 ORTHO05D009421 5.4e-21 105.5 183 40.4
CAN.G246.5 Capsicum annuum HOM05D007388 ORTHO05D009421 9.3e-21 104.8 202 36.1
MELO3C016910.2 Cucumis melo HOM05D007388 ORTHO05D009421 9.3e-21 104.8 206 35.9
Sed0027665 Sechium edule HOM05D007388 ORTHO05D009421 1.2e-20 104.4 174 39.7
PGR044G0912 Punica granatum HOM05D007388 ORTHO05D009421 1.6e-20 104.0 176 39.8
CiPaw.16G070200 Carya illinoinensis HOM05D007388 ORTHO05D009421 2.7e-20 103.2 196 36.7
COL.COLO4_21128 Corchorus olitorius HOM05D007388 ORTHO05D009421 2.7e-20 103.2 174 40.2
MD15G1051600 Malus domestica HOM05D007388 ORTHO05D009421 3.5e-20 102.8 207 35.7
QL02p016663 Quercus lobata HOM05D007388 ORTHO05D009421 4.6e-20 102.4 172 40.1
MBI19_g11844_MAGBIO Magnolia biondii HOM05D007388 ORTHO05D009421 6.0e-20 102.1 220 35.5
Peaxi162Scf00596g00105 Petunia axillaris HOM05D007388 ORTHO05D009421 6.0e-20 102.1 226 36.3
Eucgr.C03150 Eucalyptus grandis HOM05D007388 ORTHO05D009421 7.8e-20 101.7 176 38.1
Gohir.A05G039100 Gossypium hirsutum HOM05D007388 ORTHO05D009421 7.8e-20 101.7 188 40.4
Manes.16G084900 Manihot esculenta HOM05D007388 ORTHO05D009421 7.8e-20 101.7 192 37.0
Atru.chr7.1857 Acer truncatum HOM05D007388 ORTHO05D009421 1.0e-19 101.3 183 37.2
PGSC0003DMG400027673 Solanum tuberosum HOM05D007388 ORTHO05D009421 1.0e-19 101.3 199 36.7
TAR383G1008 Trochodendron aralioides HOM05D007388 ORTHO05D009421 1.7e-19 100.5 192 37.5
FvH4_2g31130 Fragaria vesca HOM05D007388 ORTHO05D009421 3.0e-19 99.8 187 35.3
FAN20G0472 Fragaria x ananassa HOM05D007388 ORTHO05D009421 3.0e-19 99.8 187 35.3
Phvul.009G081500 Phaseolus vulgaris HOM05D007388 ORTHO05D009421 3.9e-19 99.4 221 35.7
Migut.A00083 Erythranthe guttata HOM05D007388 ORTHO05D009421 5.1e-19 99.0 182 36.8
Lj1g0010451 Lotus japonicus HOM05D007388 ORTHO05D009421 5.1e-19 99.0 179 39.7
RcHm_v2.0_Chr6g0311651 Rosa chinensis HOM05D007388 ORTHO05D009421 5.1e-19 99.0 177 36.2
ClCG05G015710 Citrullus lanatus HOM05D007388 ORTHO05D009421 6.6e-19 98.6 198 35.4
Gohir.D05G040600 Gossypium hirsutum HOM05D007388 ORTHO05D009421 6.6e-19 98.6 188 39.9
AagrBONN_evm.TU.Sc2ySwM_368.3296 Anthoceros agrestis HOM05D007388 ORTHO05D009421 8.7e-19 98.2 170 37.1
Zm00001eb409580 Zea mays HOM05D007388 ORTHO05D009421 8.7e-19 98.2 208 35.6
Sopen06g034360 Solanum pennellii HOM05D007388 ORTHO05D009421 1.1e-18 97.8 214 34.1
Solyc06g082970.3 Solanum lycopersicum HOM05D007388 ORTHO05D009421 1.5e-18 97.4 214 34.1
Aa31LG1G13520 Aethionema arabicum HOM05D007388 ORTHO05D009421 1.9e-18 97.1 191 35.1
FAN24G3326 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.9e-18 97.1 187 34.8
CANSAT25G2576 Cannabis sativa HOM05D007388 ORTHO05D009421 2.5e-18 96.7 146 38.4
Nitab4.5_0001705g0020 Nicotiana tabacum HOM05D007388 ORTHO05D009421 2.5e-18 96.7 215 33.0
Ciclev10009451m.g Citrus clementina HOM05D007388 ORTHO05D009421 3.3e-18 96.3 197 36.5
MSTRG.25983 Avicennia marina HOM05D007388 ORTHO05D009421 4.3e-18 95.9 193 36.8
Nn8g38703 Nelumbo nucifera HOM05D007388 ORTHO05D009421 4.3e-18 95.9 181 36.5
Potri.006G221900 Populus trichocarpa HOM05D007388 ORTHO05D009421 5.6e-18 95.5 193 34.2
Duzib168G1804 Durio zibethinus HOM05D007388 ORTHO05D009421 7.3e-18 95.1 187 36.9
EL10Ac2g03792 Beta vulgaris HOM05D007388 ORTHO05D009421 9.6e-18 94.7 126 43.7
THA.LOC104799581 Tarenaya hassleriana HOM05D007388 ORTHO05D009421 1.3e-17 94.4 158 38.6
VMungo1309G3057 Vigna mungo HOM05D007388 ORTHO05D009421 1.6e-17 94.0 179 38.0
Sabra06G0171500 Salix brachista HOM05D007388 ORTHO05D009421 2.1e-17 93.6 188 34.6
Atru.BG.20.p Acer truncatum HOM05D007388 ORTHO05D009421 3.6e-17 92.8 127 40.2
Cc08_g01260 Coffea canephora HOM05D007388 ORTHO05D009421 4.8e-17 92.4 146 43.8
CARHR191660 Cardamine hirsuta HOM05D007388 ORTHO05D009421 8.1e-17 91.7 205 31.7
Lalb_Chr11g0063321 Lupinus albus HOM05D007388 ORTHO05D009421 8.1e-17 91.7 174 35.6
AUR62009088 Chenopodium quinoa HOM05D007388 ORTHO05D009421 1.1e-16 91.3 219 31.5
AUR62020582 Chenopodium quinoa HOM05D007388 ORTHO05D009421 1.1e-16 91.3 219 32.4
GSVIVG01035454001 Vitis vinifera HOM05D007388 ORTHO05D009421 1.1e-16 91.3 180 35.6
CDE06G1148 Ceratophyllum demersum HOM05D007388 ORTHO05D009421 1.8e-16 90.5 144 38.9
Carub.0006s1952 Capsella rubella HOM05D007388 ORTHO05D009421 2.4e-16 90.1 177 34.5
PSO421G0687 Papaver somniferum HOM05D007388 ORTHO05D009421 2.4e-16 90.1 182 35.2
AL6G32850 Arabidopsis lyrata HOM05D007388 ORTHO05D009421 4.0e-16 89.4 198 33.3
DCAR_003716 Daucus carota HOM05D007388 ORTHO05D009421 4.0e-16 89.4 149 38.3
Mapoly0129s0003 Marchantia polymorpha HOM05D007388 ORTHO05D009421 4.0e-16 89.4 199 34.2
TWI63G1062 Tripterygium wilfordii HOM05D007388 ORTHO05D009421 5.3e-16 89.0 168 36.3
AT5G21430 Arabidopsis thaliana HOM05D007388 ORTHO05D009421 6.9e-16 88.6 176 34.1
Dinv41838 Davidia involucrata HOM05D007388 ORTHO05D009421 9.0e-16 88.2 222 32.9
A10p18840 Brassica napus HOM05D007388 ORTHO05D009421 1.2e-15 87.8 191 33.5
BcaC04g19512 Brassica carinata HOM05D007388 ORTHO05D009421 1.5e-15 87.4 191 33.5
C09p54850 Brassica napus HOM05D007388 ORTHO05D009421 1.5e-15 87.4 191 33.5
BolC9t58346H Brassica oleracea HOM05D007388 ORTHO05D009421 1.5e-15 87.4 191 33.5
FAN27G0155 Fragaria x ananassa HOM05D007388 ORTHO05D009421 1.5e-15 87.4 206 32.0
BcaB08g36472 Brassica carinata HOM05D007388 ORTHO05D009421 2.0e-15 87.0 201 32.8
Medtr3g104980 Medicago truncatula HOM05D007388 ORTHO05D009421 2.6e-15 86.7 178 34.8
Rhsim10G0152000 Rhododendron simsii HOM05D007388 ORTHO05D009421 2.6e-15 86.7 143 35.7
BraA10t43964Z Brassica rapa HOM05D007388 ORTHO05D009421 3.4e-15 86.3 191 33.5
TPR.G3529 Trifolium pratense HOM05D007388 ORTHO05D009421 4.5e-15 85.9 178 32.6
CSS0004113 Camellia sinensis var. sinensis HOM05D007388 ORTHO05D009421 5.8e-15 85.5 192 32.8
ECA240G1505 Erigeron canadensis HOM05D007388 ORTHO05D009421 7.6e-15 85.1 206 32.5
Oeu000765.1 Olea europaea HOM05D007388 ORTHO05D009421 9.9e-15 84.7 166 40.4
Psat5g102720 Pisum sativum HOM05D007388 ORTHO05D009421 1.7e-14 84.0 205 31.7
Thhalv10014636m.g Eutrema salsugineum HOM05D007388 ORTHO05D009421 3.8e-14 82.8 197 32.0
Aqoxy7G01075 Aquilegia oxysepala HOM05D007388 ORTHO05D009421 4.9e-14 82.4 136 38.2
Gorai.009G041100 Gossypium raimondii HOM05D007388 ORTHO05D009421 4.9e-14 82.4 197 36.5
Sp6g23310 Schrenkiella parvula HOM05D007388 ORTHO05D009421 1.1e-13 81.3 205 30.7
vmacro12914 Vaccinium macrocarpon HOM05D007388 ORTHO05D009421 1.1e-13 81.3 104 39.4
HanXRQChr04g0097861 Helianthus annuus HOM05D007388 ORTHO05D009421 1.4e-13 80.9 182 34.6
Thecc.09G062100 Theobroma cacao HOM05D007388 ORTHO05D009421 1.4e-13 80.9 199 34.2
arahy.Tifrunner.gnm1.ann1.P6UV73 Arachis hypogaea HOM05D007388 ORTHO05D009421 7.1e-13 78.6 202 30.7
Lj7C227T7 Lonicera japonica HOM05D007388 ORTHO05D009421 2.1e-12 77.0 150 34.0
Actinidia25694 Actinidia chinensis HOM05D007388 ORTHO05D009421 3.5e-12 76.3 161 33.5
arahy.Tifrunner.gnm1.ann1.044LWD Arachis hypogaea HOM05D000560 ORTHO05D000417 6.0e-12 75.5 202 30.7
Prupe.1G405600 Prunus persica HOM05D007388 ORTHO05D009421 1.0e-11 74.7 194 32.0
Lsat_1_v5_gn_7_58400 Lactuca sativa HOM05D007388 ORTHO05D009421 4.3e-10 69.3 174 33.3
CDE07G0202 Ceratophyllum demersum HOM05D007388 ORTHO05D001048 5.6e-10 68.9 152 34.2
Lj7C225T7 Lonicera japonica HOM05D007388 ORTHO05D009421 7.4e-10 68.6 150 32.7
Nitab4.5_0000268g0090 Nicotiana tabacum HOM05D007388 ORTHO05D009421 9.6e-10 68.2 217 31.3
Ca_15836_v3 Cicer arietinum L. HOM05D007388 ORTHO05D009421 2.8e-09 66.6 133 33.8


User provided reference genes

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