Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.2e-98 363.2 187 100.0
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 1.2e-98 363.2 187 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.3e-22 109.8 118 49.2
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 2.6e-21 106.3 116 50.0
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 5.8e-21 105.1 107 52.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.9e-19 100.1 111 51.4
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 2.1e-18 96.7 86 54.7
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 4.6e-18 95.5 87 52.9
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 6.0e-18 95.1 87 51.7
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 1.7e-17 93.6 87 52.9
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 3.0e-17 92.8 87 51.7
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 3.0e-17 92.8 86 51.2
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 3.9e-17 92.4 87 54.0
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 3.9e-17 92.4 87 54.0
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 6.6e-17 91.7 87 54.0
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 6.6e-17 91.7 87 49.4
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 8.6e-17 91.3 87 49.4
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 8.6e-17 91.3 104 47.1
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 1.1e-16 90.9 87 51.7
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.1e-16 90.9 87 50.6
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 1.1e-16 90.9 87 51.7
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.5e-16 90.5 87 54.0
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.9e-16 90.1 87 49.4
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 2.5e-16 89.7 170 37.6
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.3e-16 89.4 87 49.4
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 4.3e-16 89.0 86 47.7
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 5.6e-16 88.6 100 46.0
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 7.3e-16 88.2 87 48.3
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 7.3e-16 88.2 86 50.0
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 9.5e-16 87.8 86 48.8
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.5e-16 87.8 87 51.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 9.5e-16 87.8 87 51.7
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 9.5e-16 87.8 87 50.6
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 1.2e-15 87.4 87 49.4
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.2e-15 87.4 124 41.9
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.6e-15 87.0 100 45.0
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.6e-15 87.0 100 45.0
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 2.1e-15 86.7 87 47.1
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 2.1e-15 86.7 62 58.1
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.1e-15 86.7 87 49.4
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 2.1e-15 86.7 87 49.4
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 2.1e-15 86.7 87 49.4
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 2.8e-15 86.3 89 49.4
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 2.8e-15 86.3 87 48.3
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 3.6e-15 85.9 86 50.0
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.6e-15 85.9 167 35.3
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 4.7e-15 85.5 92 44.6
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 4.7e-15 85.5 100 44.0
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 4.7e-15 85.5 83 50.6
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 4.7e-15 85.5 197 35.0
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 4.7e-15 85.5 100 45.0
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 4.7e-15 85.5 86 48.8
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 6.2e-15 85.1 90 45.6
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 6.2e-15 85.1 87 48.3
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-15 85.1 87 48.3
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 8.1e-15 84.7 92 44.6
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 8.1e-15 84.7 92 44.6
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 8.1e-15 84.7 100 44.0
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 8.1e-15 84.7 89 50.6
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 1.1e-14 84.3 91 45.1
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.1e-14 84.3 85 48.2
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.1e-14 84.3 148 34.5
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.4e-14 84.0 165 35.2
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-14 84.0 148 36.5
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.4e-14 84.0 148 36.5
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 1.4e-14 84.0 86 50.0
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.4e-14 84.0 87 46.0
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.4e-14 84.0 112 42.0
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 1.8e-14 83.6 91 45.1
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 3.1e-14 82.8 87 47.1
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 3.1e-14 82.8 87 47.1
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 4.0e-14 82.4 158 34.2
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 4.0e-14 82.4 87 49.4
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 5.2e-14 82.0 82 48.8
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 6.8e-14 81.6 86 44.2
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 6.8e-14 81.6 82 47.6
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.9e-14 81.3 61 57.4
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 1.2e-13 80.9 86 45.3
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.5e-13 80.5 87 46.0
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.4e-13 79.3 87 43.7
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 3.4e-13 79.3 87 43.7
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.3e-12 77.4 86 43.0
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 1.7e-12 77.0 91 47.3
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.7e-12 77.0 205 30.7
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 2.2e-12 76.6 87 49.4
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 3.7e-12 75.9 61 57.4
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 3.7e-12 75.9 61 57.4
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 3.7e-12 75.9 61 57.4
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 4.9e-12 75.5 87 49.4
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 4.9e-12 75.5 87 50.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 4.9e-12 75.5 87 50.6
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 1.1e-11 74.3 91 46.2
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.4e-11 73.9 87 49.4
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.4e-11 73.9 76 50.0
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 1.4e-11 73.9 183 32.2
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 1.9e-11 73.6 91 46.2
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 1.9e-11 73.6 91 46.2
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 1.9e-11 73.6 87 48.3
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.9e-11 73.6 87 48.3
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.9e-11 73.6 87 48.3
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 2.4e-11 73.2 91 46.2
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.4e-11 73.2 91 46.2
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 3.2e-11 72.8 76 50.0
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 3.2e-11 72.8 76 50.0
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 4.1e-11 72.4 87 47.1
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 4.1e-11 72.4 87 47.1
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 4.1e-11 72.4 87 47.1
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 7.1e-11 71.6 116 37.1
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 6.0e-10 68.6 136 34.6
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.3e-09 67.4 83 41.0
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 2.3e-09 66.6 80 40.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.3e-09 66.6 52 53.8
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 3.0e-09 66.2 133 32.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 3.9e-09 65.9 82 40.2
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 5.1e-09 65.5 156 34.0
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 6.6e-09 65.1 83 41.0
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 1.9e-08 63.5 120 34.2
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 3.6e-07 59.3 68 39.7
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.1e-06 57.8 52 46.2
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.4e-06 56.6 107 35.5
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 6.8e-06 55.1 35 60.0


User provided reference genes

Program Settings