Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_12010 Physcomitrium patens HOM05D005366 ORTHO05D006323 0.0e+00 5244.5 3282 100.0
Mapoly0090s0030 Marchantia polymorpha HOM05D052710 ORTHO05D006323 7.7e-36 158.7 1548 21.8
Os02g0148300 Oryza sativa ssp. japonica HOM05D005366 ORTHO05D006323 1.2e-23 118.2 375 26.9
RcHm_v2.0_Chr6g0305291 Rosa chinensis HOM05D005366 ORTHO05D006323 1.2e-23 118.2 526 28.1
Aqoxy7G02854 Aquilegia oxysepala HOM05D005366 ORTHO05D006323 7.5e-23 115.5 525 25.1
A03p60870 Brassica napus HOM05D005366 ORTHO05D006323 1.7e-22 114.4 401 25.2
BraA03t15125Z Brassica rapa HOM05D005366 ORTHO05D006323 1.7e-22 114.4 401 25.2
CANSAT25G3462 Cannabis sativa HOM05D005366 ORTHO05D006323 2.8e-22 113.6 521 25.0
Thhalv10024180m.g Eutrema salsugineum HOM05D005366 ORTHO05D006323 3.7e-22 113.2 400 26.0
CSS0043382 Camellia sinensis var. sinensis HOM05D005366 ORTHO05D006323 8.3e-22 112.1 518 25.7
AagrBONN_evm.TU.Sc2ySwM_117.273 Anthoceros agrestis HOM05D005366 ORTHO05D006323 1.1e-21 111.7 566 23.7
BraA01t00625Z Brassica rapa HOM05D005366 ORTHO05D006323 1.1e-21 111.7 478 23.6
CARHR239450 Cardamine hirsuta HOM05D005366 ORTHO05D006323 1.4e-21 111.3 482 24.3
RcHm_v2.0_Chr6g0305121 Rosa chinensis HOM05D005366 ORTHO05D006323 1.8e-21 110.9 525 26.1
AT4G31570 Arabidopsis thaliana HOM05D005366 ORTHO05D006323 4.1e-21 109.8 444 24.8
C07p58760 Brassica napus HOM05D005366 ORTHO05D006323 7.0e-21 109.0 446 24.0
BolC7t46324H Brassica oleracea HOM05D005366 ORTHO05D006323 7.0e-21 109.0 446 24.0
THA.LOC104803624 Tarenaya hassleriana HOM05D005366 ORTHO05D006323 7.0e-21 109.0 475 24.6
BcaNung01513 Brassica carinata HOM05D005366 ORTHO05D006323 1.2e-20 108.2 401 25.4
BcaNung04128 Brassica carinata HOM05D005366 ORTHO05D006323 1.6e-20 107.8 445 25.6
BcaC09g51938 Brassica carinata HOM05D005366 ORTHO05D006323 2.7e-20 107.1 549 24.2
Glyma.17G197200 Glycine max HOM05D005366 ORTHO05D006323 4.5e-20 106.3 476 24.6
AL7G20470 Arabidopsis lyrata HOM05D005366 ORTHO05D006323 1.3e-19 104.8 530 24.3
MSTRG.25794 Avicennia marina HOM05D005366 ORTHO05D006323 1.7e-19 104.4 359 27.6
CDE07G0441 Ceratophyllum demersum HOM05D005366 ORTHO05D006323 1.5e-18 101.3 399 25.1
Manes.16G134600 Manihot esculenta HOM05D005366 ORTHO05D006323 2.5e-18 100.5 542 26.2
PSO063G0316 Papaver somniferum HOM05D005366 ORTHO05D006323 7.3e-18 99.0 533 25.3
AUR62020289 Chenopodium quinoa HOM05D005366 ORTHO05D006323 2.1e-17 97.4 483 26.1
GSVIVG01033178001 Vitis vinifera HOM05D005366 ORTHO05D006323 1.0e-16 95.1 476 25.8
Dinv04518 Davidia involucrata HOM05D005366 ORTHO05D006323 1.8e-16 94.4 1705 19.8
PGR119G1611 Punica granatum HOM05D005366 ORTHO05D006323 3.0e-16 93.6 1710 19.9
Haze_21760 Corylus avellana HOM05D005366 ORTHO05D006323 4.0e-16 93.2 454 25.3
MBI16_g05842_MAGBIO Magnolia biondii HOM05D005366 ORTHO05D006323 4.0e-16 93.2 361 25.2
Sc06g0000200 Simmondsia chinensis HOM05D005366 ORTHO05D006323 4.0e-16 93.2 169 35.5
ClCG05G026190 Citrullus lanatus HOM05D002970 ORTHO05D007037 1.2e-15 91.7 209 28.7
Phvul.001G257700 Phaseolus vulgaris HOM05D002970 ORTHO05D007037 1.2e-15 91.7 553 22.6
FAN12G1086 Fragaria x ananassa HOM05D002970 ORTHO05D007037 1.5e-15 91.3 236 25.8
Hma1.2p1_0272F.1_g109200 Hydrangea macrophylla HOM05D005366 ORTHO05D006323 2.0e-15 90.9 94 48.9
Lalb_Chr22g0361211 Lupinus albus HOM05D005366 ORTHO05D006323 2.0e-15 90.9 169 35.5
PSO170G4550 Papaver somniferum HOM05D005366 ORTHO05D006323 2.0e-15 90.9 479 24.0
Gohir.D05G066000 Gossypium hirsutum HOM05D005366 ORTHO05D006323 3.4e-15 90.1 193 30.1
Gorai.009G066800 Gossypium raimondii HOM05D005366 ORTHO05D006323 3.4e-15 90.1 193 30.1
RcHm_v2.0_Chr4g0431991 Rosa chinensis HOM05D002970 ORTHO05D007037 4.4e-15 89.7 418 23.9
ECA233G2191 Erigeron canadensis HOM05D002970 ORTHO05D007037 5.8e-15 89.4 281 29.2
EL10As2g23227 Beta vulgaris HOM05D002970 ORTHO05D007037 1.7e-14 87.8 353 24.4
ATR0580G390 Amborella trichopoda HOM05D005366 ORTHO05D006323 2.9e-14 87.0 2058 20.0
MELO3C011904.2 Cucumis melo HOM05D002970 ORTHO05D007037 6.4e-14 85.9 204 30.9
Eucgr.H04698 Eucalyptus grandis HOM05D002970 ORTHO05D007037 8.3e-14 85.5 292 28.4
HanXRQChr08g0208001 Helianthus annuus HOM05D002970 ORTHO05D007037 8.3e-14 85.5 107 39.3
ECA246G5228 Erigeron canadensis HOM05D002970 ORTHO05D001380 1.1e-13 85.1 172 36.6
HanXRQChr12g0372101 Helianthus annuus HOM05D002970 ORTHO05D007037 1.4e-13 84.7 274 30.3
Cpa.g.sc23.30 Carica papaya HOM05D005366 ORTHO05D006323 1.9e-13 84.3 412 23.5
AUR62005543 Chenopodium quinoa HOM05D002970 ORTHO05D007037 1.9e-13 84.3 95 41.1
arahy.Tifrunner.gnm1.ann1.9A7Q93 Arachis hypogaea HOM05D002970 ORTHO05D007037 2.4e-13 84.0 261 26.1
C03p73460 Brassica napus HOM05D002970 ORTHO05D007037 2.4e-13 84.0 514 24.3
FvH4_4g24950 Fragaria vesca HOM05D002970 ORTHO05D007037 2.4e-13 84.0 589 21.2
arahy.Tifrunner.gnm1.ann1.CS70SB Arachis hypogaea HOM05D002970 ORTHO05D007037 3.2e-13 83.6 271 25.1
MD16G1107700 Malus domestica HOM05D002970 ORTHO05D007037 3.2e-13 83.6 285 26.0
Manes.12G018200 Manihot esculenta HOM05D002970 ORTHO05D007037 3.2e-13 83.6 562 22.6
PSO013G0304 Papaver somniferum HOM05D002970 ORTHO05D007037 4.1e-13 83.2 555 23.1
Prupe.1G238600 Prunus persica HOM05D002970 ORTHO05D007037 4.1e-13 83.2 254 27.2
Cc11_g16290 Coffea canephora HOM05D002970 ORTHO05D007037 5.4e-13 82.8 457 23.4
A08p26560 Brassica napus HOM05D002970 ORTHO05D007037 7.0e-13 82.4 520 24.0
MD15G1106500 Malus domestica HOM05D005366 ORTHO05D006323 9.2e-13 82.0 1731 19.7
Psat0s839g0040 Pisum sativum HOM05D005366 ORTHO05D006323 9.2e-13 82.0 1814 19.8
BraA08t34608Z Brassica rapa HOM05D002970 ORTHO05D007037 1.2e-12 81.6 518 23.9
CANSAT01G0097 Cannabis sativa HOM05D002970 ORTHO05D007037 1.6e-12 81.3 578 22.0
CARHR026670 Cardamine hirsuta HOM05D002970 ORTHO05D007037 1.6e-12 81.3 282 25.2
FAN22G0223 Fragaria x ananassa HOM05D002970 ORTHO05D007037 1.6e-12 81.3 595 21.2
BolC3t19641H Brassica oleracea HOM05D002970 ORTHO05D007037 2.0e-12 80.9 517 23.8
Glyma.11G246000 Glycine max HOM05D002970 ORTHO05D007037 2.7e-12 80.5 532 20.9
Lalb_Chr23g0277811 Lupinus albus HOM05D002970 ORTHO05D007037 2.7e-12 80.5 199 27.6
VMungo1383G0211 Vigna mungo HOM05D002970 ORTHO05D007037 2.7e-12 80.5 448 23.0
FAN20G2855 Fragaria x ananassa HOM05D005366 ORTHO05D006323 3.5e-12 80.1 155 34.2
Glyma.18G011200 Glycine max HOM05D002970 ORTHO05D007037 3.5e-12 80.1 551 21.8
Lj5g0008306 Lotus japonicus HOM05D005366 ORTHO05D006323 3.5e-12 80.1 1678 19.4
Ah.03g133670 Amaranthus hybridus HOM05D002970 ORTHO05D007037 4.6e-12 79.7 586 23.2
CDE09G0990 Ceratophyllum demersum HOM05D002970 ORTHO05D007037 4.6e-12 79.7 148 32.4
Duzib251G0656 Durio zibethinus HOM05D002970 ORTHO05D007037 1.0e-11 78.6 579 23.8
PSO063G0226 Papaver somniferum HOM05D002970 ORTHO05D007037 1.0e-11 78.6 545 23.3
QL03p055853 Quercus lobata HOM05D002970 ORTHO05D007037 1.3e-11 78.2 566 23.3
Rhsim11G0005000 Rhododendron simsii HOM05D005366 ORTHO05D006323 1.7e-11 77.8 1663 20.4
Dinv11020 Davidia involucrata HOM05D002970 ORTHO05D007037 2.3e-11 77.4 1522 20.4
HPP92_009917 Vanilla planifolia HOM05D002970 ORTHO05D007037 2.3e-11 77.4 510 23.3
PGR119G0825 Punica granatum HOM05D002970 ORTHO05D007037 3.0e-11 77.0 536 22.6
AL1G40480 Arabidopsis lyrata HOM05D002970 ORTHO05D007037 3.9e-11 76.6 514 21.8
FAN07G0847 Fragaria x ananassa HOM05D002970 ORTHO05D007037 3.9e-11 76.6 594 22.6
Aqoxy5G03607 Aquilegia oxysepala HOM05D002970 ORTHO05D007037 5.0e-11 76.3 438 23.1
BcaC05g26716 Brassica carinata HOM05D002970 ORTHO05D007037 5.0e-11 76.3 514 22.0
DCAR_000688 Daucus carota HOM05D005366 ORTHO05D006323 5.0e-11 76.3 1703 19.8
Medtr1g009610 Medicago truncatula HOM05D005366 ORTHO05D006323 5.0e-11 76.3 1784 20.3
EL10Ac6g15185 Beta vulgaris HOM05D002970 ORTHO05D007037 6.6e-11 75.9 573 21.8
BcaB03g12058 Brassica carinata HOM05D002970 ORTHO05D007037 6.6e-11 75.9 611 23.1
unitig_749.g13282 Utricularia gibba HOM05D002970 ORTHO05D009571 8.6e-11 75.5 102 37.3
Ciclev10030479m.g Citrus clementina HOM05D002970 ORTHO05D007037 1.1e-10 75.1 454 22.5
A09p38780 Brassica napus HOM05D002970 ORTHO05D007037 1.5e-10 74.7 524 25.0
C05p25820 Brassica napus HOM05D002970 ORTHO05D007037 1.5e-10 74.7 532 23.1
unitig_32.g11652 Utricularia gibba HOM05D005366 ORTHO05D006323 1.5e-10 74.7 512 25.0
Gorai.002G190100 Gossypium raimondii HOM05D002970 ORTHO05D007037 1.9e-10 74.3 536 25.0
vmacro01100 Vaccinium macrocarpon HOM05D002970 ORTHO05D007037 2.5e-10 73.9 547 22.7
Rhsim12G0037200 Rhododendron simsii HOM05D002970 ORTHO05D007037 3.3e-10 73.6 546 22.5
TWI36G0141 Tripterygium wilfordii HOM05D002970 ORTHO05D007037 3.3e-10 73.6 566 21.7
BraA09t39386Z Brassica rapa HOM05D002970 ORTHO05D007037 4.3e-10 73.2 524 25.0
ECA240G0683 Erigeron canadensis HOM05D005366 ORTHO05D006323 7.3e-10 72.4 1629 19.6
TAR625G1380 Trochodendron aralioides HOM05D005366 ORTHO05D006323 7.3e-10 72.4 485 22.9
BcaC05g26524 Brassica carinata HOM05D002970 ORTHO05D007037 9.5e-10 72.0 507 21.3
Sp1g23340 Schrenkiella parvula HOM05D002970 ORTHO05D007037 9.5e-10 72.0 481 20.6
CiPaw.07G211400 Carya illinoinensis HOM05D005366 ORTHO05D006323 1.2e-09 71.6 1509 19.0
Medtr3g086150 Medicago truncatula HOM05D002970 ORTHO05D007037 1.2e-09 71.6 571 21.4
Nitab4.5_0000555g0160 Nicotiana tabacum HOM05D005366 ORTHO05D006323 2.1e-09 70.9 1677 19.1
Actinidia30694 Actinidia chinensis HOM05D002970 ORTHO05D007037 2.8e-09 70.5 586 21.8
Actinidia08107 Actinidia chinensis HOM05D002970 ORTHO05D007037 4.7e-09 69.7 1529 19.0
C01p07430 Brassica napus HOM05D005366 ORTHO05D006323 4.7e-09 69.7 1698 20.6
Carub.0001s2565 Capsella rubella HOM05D002970 ORTHO05D007037 4.7e-09 69.7 608 23.4
SalBow4G0033 Salvia bowleyana HOM05D005366 ORTHO05D006323 4.7e-09 69.7 1686 17.7
Gohir.D02G154501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 6.2e-09 69.3 464 20.9
MD13G1107800 Malus domestica HOM05D002970 ORTHO05D007037 6.2e-09 69.3 407 22.6
BolC5t31302H Brassica oleracea HOM05D002970 ORTHO05D007037 1.4e-08 68.2 504 24.0
Cpa.g.sc86.7 Carica papaya HOM05D002970 ORTHO05D007037 1.4e-08 68.2 576 22.7
Thhalv10006539m.g Eutrema salsugineum HOM05D002970 ORTHO05D007037 2.3e-08 67.4 594 24.4
AT1G24460 Arabidopsis thaliana HOM05D002970 ORTHO05D007037 3.1e-08 67.0 578 20.8
BcaC06g35268 Brassica carinata HOM05D002970 ORTHO05D007037 5.2e-08 66.2 95 33.7
EL10Ac2g02416 Beta vulgaris HOM05D005366 ORTHO05D006323 6.8e-08 65.9 1742 19.9
Sed0022070 Sechium edule HOM05D002970 ORTHO05D007037 1.5e-07 64.7 567 19.6
COL.COLO4_19020 Corchorus olitorius HOM05D005366 ORTHO05D006323 2.0e-07 64.3 402 21.4
Lj6g0025430 Lotus japonicus HOM05D002970 ORTHO05D007037 2.0e-07 64.3 548 21.2
Prupe.1G459000 Prunus persica HOM05D005366 ORTHO05D006323 2.6e-07 63.9 1609 19.1
Thecc.02G269400 Theobroma cacao HOM05D002970 ORTHO05D007037 2.6e-07 63.9 577 22.4
Gohir.D01G153501 Gossypium hirsutum HOM05D002970 ORTHO05D007037 3.4e-07 63.5 595 22.5
THA.LOC104825534 Tarenaya hassleriana HOM05D002970 ORTHO05D007037 3.4e-07 63.5 578 21.8
Ca_25118_v3 Cicer arietinum L. HOM05D002970 ORTHO05D007037 4.4e-07 63.2 555 21.4
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 4.4e-07 63.2 470 23.4
CiPaw.05G175500 Carya illinoinensis HOM05D002970 ORTHO05D007037 5.8e-07 62.8 1571 22.3
Lsat_1_v5_gn_3_29221 Lactuca sativa HOM05D002970 ORTHO05D007037 7.5e-07 62.4 478 23.0
Potri.010G052600 Populus trichocarpa HOM05D002970 ORTHO05D007037 9.8e-07 62.0 580 21.7
TPR.G14240 Trifolium pratense HOM05D002970 ORTHO05D007037 1.3e-06 61.6 559 22.0
MSTRG.540 Avicennia marina HOM05D002970 ORTHO05D007037 2.9e-06 60.5 607 22.6
Sopen08g002360 Solanum pennellii HOM05D005366 ORTHO05D006323 3.7e-06 60.1 1664 18.9
Migut.K00673 Erythranthe guttata HOM05D002970 ORTHO05D007037 6.4e-06 59.3 586 22.5


User provided reference genes

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