Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 0.0e+00 1587.0 800 100.0
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 0.0e+00 1362.1 802 85.8
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.0e-272 942.6 949 55.8
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 9.4e-262 907.1 858 57.6
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 7.7e-248 860.9 797 56.5
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 4.1e-225 785.4 749 54.5
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.7e-223 780.0 764 52.5
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 1.5e-222 776.9 767 53.3
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 5.5e-222 775.0 766 52.9
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 1.6e-221 773.5 765 52.5
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 1.0e-220 770.8 747 52.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.4e-220 770.4 766 52.5
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 4.0e-220 768.8 748 52.4
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 1.2e-219 767.3 741 53.4
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 2.6e-219 766.1 747 52.7
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 7.5e-219 764.6 780 51.9
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.2e-218 763.1 748 52.4
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 4.9e-218 761.9 773 51.7
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 8.3e-218 761.1 738 52.8
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.1e-217 760.8 762 52.4
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 7.0e-217 758.1 748 52.1
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.2e-216 757.3 759 53.1
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 4.5e-216 755.4 728 53.3
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 5.9e-216 755.0 756 51.2
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 1.0e-215 754.2 748 51.3
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.7e-215 753.4 768 53.0
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 3.8e-215 752.3 768 52.6
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 3.8e-215 752.3 765 51.2
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 5.0e-215 751.9 761 51.4
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 5.0e-215 751.9 762 51.2
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 6.6e-215 751.5 740 53.2
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.5e-214 750.4 758 52.4
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.9e-214 750.0 765 51.1
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 1.9e-214 750.0 757 51.9
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 2.5e-214 749.6 768 52.2
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.5e-214 749.6 748 52.3
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 3.3e-214 749.2 762 50.9
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 5.6e-214 748.4 749 52.6
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 1.2e-213 747.3 760 51.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 1.0e-212 744.2 745 52.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 1.8e-212 743.4 736 51.8
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 4.0e-212 742.3 747 51.1
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 5.2e-212 741.9 756 50.7
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 8.9e-212 741.1 748 51.1
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 8.9e-212 741.1 743 51.5
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 1.2e-211 740.7 742 51.6
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 1.5e-211 740.3 748 51.1
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 2.0e-211 740.0 759 51.3
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 2.6e-211 739.6 770 50.0
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 3.4e-211 739.2 743 51.4
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 5.8e-211 738.4 760 50.4
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 5.8e-211 738.4 765 50.2
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 1.3e-210 737.3 745 50.9
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 2.4e-209 733.0 746 50.8
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 7.0e-209 731.5 706 52.4
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 9.2e-209 731.1 699 53.5
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 1.2e-208 730.7 760 49.7
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 6.0e-208 728.4 740 50.4
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 1.0e-207 727.6 730 50.4
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.3e-207 727.2 746 50.0
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.3e-207 727.2 749 49.9
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.3e-207 727.2 750 50.8
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 1.7e-207 726.9 699 52.1
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 1.9e-206 723.4 743 49.9
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.5e-206 723.0 747 50.7
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 3.3e-206 722.6 747 49.5
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 4.3e-206 722.2 756 49.7
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 5.6e-206 721.8 747 51.3
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 1.2e-205 720.7 758 49.3
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 3.1e-204 716.1 698 51.7
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 4.0e-204 715.7 749 49.4
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.2e-203 714.1 744 49.6
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.5e-203 713.8 735 49.4
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 3.4e-203 712.6 749 49.5
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 2.2e-202 709.9 680 53.4
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 2.9e-202 709.5 746 49.5
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 2.9e-202 709.5 699 52.6
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 3.7e-202 709.1 746 49.5
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 6.4e-202 708.4 699 51.1
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 8.3e-202 708.0 699 52.5
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 1.4e-201 707.2 699 51.6
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 7.0e-201 704.9 731 49.7
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 4.6e-200 702.2 700 52.1
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 1.0e-199 701.0 730 50.1
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 3.9e-199 699.1 729 48.3
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 8.6e-199 698.0 527 63.2
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 2.5e-198 696.4 750 48.3
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 2.5e-198 696.4 748 49.2
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.5e-198 696.4 698 50.9
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 3.6e-197 692.6 749 47.7
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 4.7e-197 692.2 750 47.9
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 6.2e-197 691.8 751 47.8
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 3.1e-196 689.5 731 51.6
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 4.4e-195 685.6 749 48.1
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 2.9e-194 682.9 750 47.3
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 4.9e-194 682.2 698 49.9
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 1.2e-192 677.6 751 47.1
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 8.9e-188 661.4 748 47.2
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 4.4e-187 659.1 764 49.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 7.1e-185 651.7 724 47.9
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.3e-183 647.5 517 59.8
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 3.9e-183 646.0 746 46.1
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 1.7e-175 620.5 1023 40.1
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 2.4e-172 610.1 690 49.1
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 4.9e-170 602.4 746 46.0
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 2.1e-168 597.0 739 44.5
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 9.6e-166 588.2 463 60.5
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 4.0e-156 556.2 453 58.9
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 6.9e-156 555.4 738 42.1
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.4e-137 494.6 637 43.2
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 8.2e-125 452.2 502 49.0
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 3.2e-121 440.3 421 52.0
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 1.3e-93 348.6 263 63.9
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.0e-90 339.0 336 50.9
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.3e-89 334.0 249 64.3
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 7.5e-86 322.8 404 42.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 3.2e-84 317.4 435 42.5
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 7.8e-83 312.8 339 52.2
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 1.3e-74 285.4 215 63.3
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 2.0e-70 271.6 508 36.8
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.8e-55 221.9 148 69.6
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 5.0e-37 160.6 479 30.1
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 9.3e-36 156.4 124 57.3
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 4.8e-24 117.5 120 52.5


User provided reference genes

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