Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.9e-84 314.7 154 100.0
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 2.4e-25 119.4 132 46.2
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 2.1e-21 106.3 144 44.4
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 2.1e-21 106.3 105 46.7
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 1.4e-20 103.6 121 41.3
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 1.8e-20 103.2 90 51.1
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-19 100.5 84 53.6
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.5e-19 100.1 87 49.4
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-19 99.8 87 49.4
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 2.0e-19 99.8 91 47.3
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 2.0e-19 99.8 87 50.6
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 2.6e-19 99.4 84 53.6
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 3.4e-19 99.0 87 49.4
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-19 99.0 87 49.4
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.4e-19 99.0 87 49.4
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 3.4e-19 99.0 91 50.5
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.4e-19 98.6 86 52.3
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 4.4e-19 98.6 87 49.4
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 5.8e-19 98.2 98 45.9
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 5.8e-19 98.2 87 48.3
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 5.8e-19 98.2 87 48.3
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 5.8e-19 98.2 93 50.5
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 5.8e-19 98.2 84 51.2
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 7.6e-19 97.8 86 50.0
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 7.6e-19 97.8 87 49.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 7.6e-19 97.8 84 51.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 7.6e-19 97.8 84 51.2
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 7.6e-19 97.8 87 48.3
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 7.6e-19 97.8 87 48.3
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.6e-19 97.8 94 46.8
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 7.6e-19 97.8 85 50.6
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 9.9e-19 97.4 87 48.3
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 9.9e-19 97.4 95 51.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 9.9e-19 97.4 88 51.1
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 9.9e-19 97.4 87 50.6
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 9.9e-19 97.4 124 41.9
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 1.3e-18 97.1 87 51.7
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.3e-18 97.1 86 48.8
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 1.7e-18 96.7 86 51.2
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 1.7e-18 96.7 109 42.2
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 1.7e-18 96.7 87 48.3
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.2e-18 96.3 101 46.5
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 2.9e-18 95.9 85 51.8
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 2.9e-18 95.9 87 48.3
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 3.8e-18 95.5 86 50.0
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 3.8e-18 95.5 81 53.1
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 3.8e-18 95.5 86 50.0
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 3.8e-18 95.5 86 47.7
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.8e-18 95.5 87 47.1
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 3.8e-18 95.5 84 48.8
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 3.8e-18 95.5 84 50.0
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 4.9e-18 95.1 88 51.1
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 4.9e-18 95.1 86 48.8
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 4.9e-18 95.1 100 42.0
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 4.9e-18 95.1 86 51.2
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 4.9e-18 95.1 81 50.6
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 6.4e-18 94.7 86 47.7
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 6.4e-18 94.7 86 48.8
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-18 94.7 84 50.0
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 6.4e-18 94.7 84 50.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 6.4e-18 94.7 86 48.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 8.4e-18 94.4 84 48.8
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 8.4e-18 94.4 86 48.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 8.4e-18 94.4 86 48.8
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 8.4e-18 94.4 86 46.5
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 8.4e-18 94.4 84 48.8
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.1e-17 94.0 86 47.7
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-17 94.0 86 48.8
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-17 94.0 86 47.7
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 1.1e-17 94.0 86 47.7
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 1.1e-17 94.0 86 47.7
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 1.1e-17 94.0 86 47.7
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 1.1e-17 94.0 86 47.7
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 1.1e-17 94.0 84 47.6
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 1.1e-17 94.0 148 35.8
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 1.1e-17 94.0 89 48.3
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.4e-17 93.6 85 48.2
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 1.4e-17 93.6 86 48.8
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.4e-17 93.6 86 46.5
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.4e-17 93.6 86 46.5
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 1.4e-17 93.6 87 50.6
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 1.4e-17 93.6 89 47.2
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 1.9e-17 93.2 88 48.9
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 1.9e-17 93.2 86 47.7
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.9e-17 93.2 112 41.1
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.9e-17 93.2 84 46.4
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.9e-17 93.2 86 47.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 2.4e-17 92.8 86 47.7
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 2.4e-17 92.8 86 47.7
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 3.2e-17 92.4 86 46.5
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.2e-17 92.4 84 47.6
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.2e-17 92.0 101 41.6
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 4.2e-17 92.0 89 51.7
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 4.2e-17 92.0 85 51.8
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.4e-17 91.7 86 47.7
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.4e-17 91.7 85 51.8
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 7.1e-17 91.3 91 46.2
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 7.1e-17 91.3 86 47.7
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 7.1e-17 91.3 84 46.4
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 7.1e-17 91.3 84 46.4
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 7.1e-17 91.3 84 51.2
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 9.3e-17 90.9 86 47.7
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 9.3e-17 90.9 86 47.7
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 9.3e-17 90.9 84 47.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 1.2e-16 90.5 85 50.6
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.2e-16 90.5 89 46.1
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 1.6e-16 90.1 84 46.4
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.6e-16 90.1 85 51.8
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.6e-16 90.1 86 46.5
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.6e-16 90.1 87 48.3
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 1.6e-16 90.1 86 45.3
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 2.1e-16 89.7 87 44.8
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-16 89.7 86 45.3
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.1e-16 89.7 86 45.3
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.1e-16 89.7 93 47.3
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 3.5e-16 89.0 83 45.8
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 3.5e-16 89.0 86 44.2
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 3.5e-16 89.0 84 45.2
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 3.5e-16 89.0 82 51.2
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.6e-16 88.6 92 45.7
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.6e-16 88.6 83 47.0
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 6.0e-16 88.2 88 42.0
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 6.0e-16 88.2 84 46.4
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 7.9e-16 87.8 96 44.8
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 7.9e-16 87.8 86 46.5
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 5.1e-15 85.1 83 47.0
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 1.5e-14 83.6 88 46.6
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.5e-14 82.8 92 44.6
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 2.5e-14 82.8 87 43.7
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 4.3e-14 82.0 89 42.7
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 4.3e-14 82.0 81 44.4
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 9.6e-14 80.9 95 45.3
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.1e-13 79.7 109 37.6
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.1e-13 79.7 110 38.2
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 6.2e-13 78.2 88 40.9
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 8.1e-13 77.8 125 33.6
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 8.1e-13 77.8 87 37.9
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-12 77.0 106 41.5
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.8e-12 76.6 87 41.4
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 6.9e-12 74.7 88 39.8
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 2.0e-11 73.2 60 50.0
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 2.6e-11 72.8 69 43.5
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 3.2e-09 65.9 85 35.3
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.9e-06 56.6 64 46.9


User provided reference genes

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