Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 1.6e-83 312.8 167 100.0
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 7.0e-18 94.7 148 45.3
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.8e-16 89.0 151 43.7
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.1e-14 83.2 124 44.4
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.0e-13 80.9 111 45.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 2.3e-13 79.7 145 41.4
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.0e-13 79.3 141 41.8
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 4.0e-13 79.0 137 41.6
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 5.2e-13 78.6 125 41.6
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 5.2e-13 78.6 125 41.6
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 1.2e-12 77.4 139 37.4
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.5e-12 77.0 119 42.0
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-12 77.0 143 39.9
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-12 75.9 124 39.5
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 3.3e-12 75.9 136 39.0
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.4e-12 75.5 141 39.0
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 5.7e-12 75.1 151 37.1
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 5.7e-12 75.1 117 42.7
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 5.7e-12 75.1 117 42.7
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 5.7e-12 75.1 117 42.7
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 5.7e-12 75.1 124 46.0
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 5.7e-12 75.1 140 38.6
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 5.7e-12 75.1 166 39.8
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 7.5e-12 74.7 137 40.1
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 7.5e-12 74.7 141 41.1
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 7.5e-12 74.7 148 39.2
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 9.7e-12 74.3 86 51.2
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 9.7e-12 74.3 91 45.1
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.3e-11 73.9 116 44.8
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-11 73.6 120 43.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.7e-11 73.6 141 39.7
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.7e-11 73.6 119 42.9
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.2e-11 73.2 136 39.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 2.2e-11 73.2 170 39.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.8e-11 72.8 141 36.9
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 2.8e-11 72.8 149 39.6
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 3.7e-11 72.4 120 43.3
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 3.7e-11 72.4 123 43.1
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 3.7e-11 72.4 123 41.5
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.7e-11 72.4 149 34.9
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 3.7e-11 72.4 119 43.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 4.8e-11 72.0 125 41.6
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.8e-11 72.0 119 42.0
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.3e-11 71.6 151 36.4
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 6.3e-11 71.6 143 40.6
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 6.3e-11 71.6 123 43.1
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 6.3e-11 71.6 123 40.7
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 6.3e-11 71.6 130 39.2
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 8.2e-11 71.2 76 53.9
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 8.2e-11 71.2 76 53.9
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 8.2e-11 71.2 76 53.9
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 8.2e-11 71.2 86 51.2
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 1.1e-10 70.9 141 36.2
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.4e-10 70.5 182 35.2
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 1.8e-10 70.1 87 50.6
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.8e-10 70.1 153 37.9
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.4e-10 69.7 174 34.5
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 2.4e-10 69.7 120 41.7
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 2.4e-10 69.7 121 43.8
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.4e-10 69.7 146 37.7
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 2.4e-10 69.7 116 39.7
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 3.1e-10 69.3 153 37.9
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 4.1e-10 68.9 145 39.3
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 4.1e-10 68.9 125 40.8
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 4.1e-10 68.9 122 41.8
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 7.0e-10 68.2 144 36.1
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 9.1e-10 67.8 129 37.2
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 9.1e-10 67.8 122 40.2
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 9.1e-10 67.8 115 44.3
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.2e-09 67.4 119 41.2
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.2e-09 67.4 148 36.5
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.6e-09 67.0 143 35.7
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.6e-09 67.0 119 41.2
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 1.6e-09 67.0 141 36.2
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.6e-09 67.0 86 47.7
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 1.6e-09 67.0 123 39.0
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 2.0e-09 66.6 172 33.1
Cre03.g168500 Chlamydomonas reinhardtii HOM05D004771 ORTHO05D005565 2.7e-09 66.2 102 39.2
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.7e-09 66.2 123 37.4
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.7e-09 66.2 134 35.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 3.5e-09 65.9 98 45.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.5e-09 65.9 76 51.3
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 3.5e-09 65.9 121 40.5
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 4.5e-09 65.5 136 37.5
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 4.5e-09 65.5 148 33.8
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 4.5e-09 65.5 84 47.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 4.5e-09 65.5 133 35.3
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.9e-09 65.1 140 36.4
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 7.7e-09 64.7 84 48.8
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 7.7e-09 64.7 150 36.7
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 7.7e-09 64.7 162 34.0
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 7.7e-09 64.7 128 38.3
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 7.7e-09 64.7 117 37.6
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 7.7e-09 64.7 117 37.6
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.0e-08 64.3 132 36.4
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 1.3e-08 63.9 123 41.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 1.7e-08 63.5 144 36.8
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.7e-08 63.5 149 34.2
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.7e-08 63.5 168 36.9
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 1.7e-08 63.5 152 34.9
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 2.2e-08 63.2 101 44.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 2.2e-08 63.2 116 39.7
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 2.2e-08 63.2 127 40.2
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.9e-08 62.8 142 34.5
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 3.8e-08 62.4 132 36.4
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.8e-08 62.4 142 37.3
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.8e-08 62.4 98 41.8
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.8e-08 62.4 94 43.6
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.0e-08 62.0 144 36.1
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 6.5e-08 61.6 144 36.8
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 6.5e-08 61.6 162 36.4
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 6.5e-08 61.6 84 48.8
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 6.5e-08 61.6 106 37.7
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 6.5e-08 61.6 175 33.7
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 8.5e-08 61.2 130 39.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 1.1e-07 60.8 149 36.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 2.5e-07 59.7 145 35.9
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.2e-07 58.9 150 33.3
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 4.2e-07 58.9 142 35.2
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 5.5e-07 58.5 142 35.2
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 7.2e-07 58.2 122 37.7
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 7.2e-07 58.2 130 37.7
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.2e-07 58.2 140 37.9
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 1.6e-06 57.0 96 39.6
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.6e-06 57.0 97 40.2
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 2.1e-06 56.6 171 32.7
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 2.1e-06 56.6 141 32.6
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.7e-06 56.2 76 46.1
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 2.7e-06 56.2 113 37.2
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 4.7e-06 55.5 139 31.7
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 4.7e-06 55.5 139 31.7
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 8.0e-06 54.7 139 31.7


User provided reference genes

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