Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_9990 Physcomitrium patens HOM05D006824 ORTHO05D008779 1.8e-159 565.8 281 100.0
Mapoly0002s0020 Marchantia polymorpha HOM05D006824 ORTHO05D008779 1.8e-71 273.5 236 56.4
Atru.chr12.2132 Acer truncatum HOM05D006824 ORTHO05D008779 3.2e-68 262.7 192 58.3
THA.LOC104813550 Tarenaya hassleriana HOM05D006824 ORTHO05D008779 4.2e-68 262.3 212 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3559 Anthoceros agrestis HOM05D006824 ORTHO05D008779 9.5e-68 261.2 204 59.3
ECA232G2571 Erigeron canadensis HOM05D006824 ORTHO05D008779 4.7e-67 258.8 202 58.4
Phvul.008G055700 Phaseolus vulgaris HOM05D006824 ORTHO05D008779 4.7e-67 258.8 210 55.2
A07p26320 Brassica napus HOM05D006824 ORTHO05D008779 1.0e-66 257.7 194 58.8
PGSC0003DMG400023472 Solanum tuberosum HOM05D006824 ORTHO05D008779 1.0e-66 257.7 217 54.8
TWI14G0776 Tripterygium wilfordii HOM05D006824 ORTHO05D008779 1.0e-66 257.7 195 60.5
BraA07t30276Z Brassica rapa HOM05D006824 ORTHO05D008779 1.4e-66 257.3 194 58.8
SMO361G0474 Selaginella moellendorffii HOM05D006824 ORTHO05D008779 1.4e-66 257.3 219 55.3
arahy.Tifrunner.gnm1.ann1.3Y20MY Arachis hypogaea HOM05D006824 ORTHO05D008779 1.8e-66 256.9 194 59.3
PGR031G0982 Punica granatum HOM05D006824 ORTHO05D008779 2.3e-66 256.5 229 52.4
Aa31LG4G40 Aethionema arabicum HOM05D006824 ORTHO05D008779 4.0e-66 255.8 195 59.0
arahy.Tifrunner.gnm1.ann1.8HY0WZ Arachis hypogaea HOM05D006824 ORTHO05D008779 4.0e-66 255.8 194 58.8
Glyma.09G252100 Glycine max HOM05D006824 ORTHO05D008779 5.2e-66 255.4 192 58.9
Nitab4.5_0005183g0030 Nicotiana tabacum HOM05D006824 ORTHO05D008779 6.8e-66 255.0 198 58.6
AUR62000332 Chenopodium quinoa HOM05D006824 ORTHO05D008779 1.2e-65 254.2 202 56.9
Lalb_Chr19g0126751 Lupinus albus HOM05D006824 ORTHO05D008779 1.2e-65 254.2 192 59.9
Glyma.18G240500 Glycine max HOM05D006824 ORTHO05D008779 1.5e-65 253.8 228 51.8
CBR_g54655 Chara braunii HOM05D006824 ORTHO05D008779 3.4e-65 252.7 214 57.5
Oeu010150.1 Olea europaea HOM05D006824 ORTHO05D008779 3.4e-65 252.7 225 52.4
Sp5g35980 Schrenkiella parvula HOM05D006824 ORTHO05D008779 3.4e-65 252.7 213 54.9
VMungo1383G3541 Vigna mungo HOM05D006824 ORTHO05D008779 3.4e-65 252.7 210 54.8
Sed0011929 Sechium edule HOM05D006824 ORTHO05D008779 4.4e-65 252.3 197 58.4
EL10Ac4g09985 Beta vulgaris HOM05D006824 ORTHO05D008779 5.7e-65 251.9 213 54.0
AUR62006674 Chenopodium quinoa HOM05D006824 ORTHO05D008779 5.7e-65 251.9 202 56.4
Haze_04530 Corylus avellana HOM05D006824 ORTHO05D008779 5.7e-65 251.9 192 57.3
Medtr7g079530 Medicago truncatula HOM05D006824 ORTHO05D008779 5.7e-65 251.9 210 54.3
vmacro06000 Vaccinium macrocarpon HOM05D006824 ORTHO05D008779 5.7e-65 251.9 277 49.1
C06p28710 Brassica napus HOM05D006824 ORTHO05D008779 7.5e-65 251.5 228 53.5
CARHR049030 Cardamine hirsuta HOM05D006824 ORTHO05D008779 7.5e-65 251.5 189 58.2
Manes.14G158930 Manihot esculenta HOM05D006824 ORTHO05D008779 9.8e-65 251.1 192 57.8
Psat3g104840 Pisum sativum HOM05D006824 ORTHO05D008779 1.3e-64 250.8 192 56.2
TPR.G28449 Trifolium pratense HOM05D006824 ORTHO05D008779 1.3e-64 250.8 192 57.8
RcHm_v2.0_Chr3g0448181 Rosa chinensis HOM05D006824 ORTHO05D008779 2.2e-64 250.0 198 56.6
Dinv04348 Davidia involucrata HOM05D006824 ORTHO05D008779 2.8e-64 249.6 192 57.3
Thhalv10019052m.g Eutrema salsugineum HOM05D006824 ORTHO05D008779 2.8e-64 249.6 194 56.7
Ca_07965_v3 Cicer arietinum L. HOM05D006824 ORTHO05D008779 3.7e-64 249.2 195 57.4
Cc09_g03430 Coffea canephora HOM05D006824 ORTHO05D008779 3.7e-64 249.2 227 52.4
Duzib128G1599 Durio zibethinus HOM05D006824 ORTHO05D008779 3.7e-64 249.2 192 56.8
Sopen05g034220 Solanum pennellii HOM05D006824 ORTHO05D008779 3.7e-64 249.2 229 51.1
Lsat_1_v5_gn_9_48761 Lactuca sativa HOM05D006824 ORTHO05D008779 4.9e-64 248.8 228 53.9
CANSAT54G2581 Cannabis sativa HOM05D006824 ORTHO05D008779 6.3e-64 248.4 192 58.3
ClCG11G010940 Citrullus lanatus HOM05D006824 ORTHO05D008779 8.3e-64 248.1 192 60.4
GSVIVG01019144001 Vitis vinifera HOM05D006824 ORTHO05D008779 1.1e-63 247.7 192 56.8
Carub.0002s2772 Capsella rubella HOM05D006824 ORTHO05D008779 1.4e-63 247.3 194 56.7
FAN05G0802 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.4e-63 247.3 192 56.8
Lj8A196G47 Lonicera japonica HOM05D006824 ORTHO05D008779 1.4e-63 247.3 197 56.3
MD12G1258900 Malus domestica HOM05D006824 ORTHO05D008779 1.4e-63 247.3 192 56.8
Gorai.003G050700 Gossypium raimondii HOM05D006824 ORTHO05D008779 1.8e-63 246.9 192 56.2
Gohir.A02G138800 Gossypium hirsutum HOM05D006824 ORTHO05D008779 4.1e-63 245.7 192 55.7
Prupe.6G359400 Prunus persica HOM05D006824 ORTHO05D008779 4.1e-63 245.7 192 55.7
Rhsim03G0265800 Rhododendron simsii HOM05D006824 ORTHO05D008779 4.1e-63 245.7 212 54.2
Potri.010G143000 Populus trichocarpa HOM05D006824 ORTHO05D008779 5.4e-63 245.4 192 53.6
AL2G41760 Arabidopsis lyrata HOM05D006824 ORTHO05D008779 7.0e-63 245.0 194 55.2
CAN.G694.18 Capsicum annuum HOM05D006824 ORTHO05D008779 7.0e-63 245.0 199 55.3
Eucgr.H01379 Eucalyptus grandis HOM05D006824 ORTHO05D008779 7.0e-63 245.0 193 57.0
Sabra10G0110900 Salix brachista HOM05D006824 ORTHO05D008779 9.2e-63 244.6 202 52.0
CDE09G0666 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 2.0e-62 243.4 192 56.2
Thecc.05G206500 Theobroma cacao HOM05D006824 ORTHO05D008779 2.0e-62 243.4 192 55.2
HanXRQChr11g0323941 Helianthus annuus HOM05D006824 ORTHO05D008779 2.7e-62 243.0 213 54.5
BolC6t38040H Brassica oleracea HOM05D006824 ORTHO05D008779 4.5e-62 242.3 260 47.3
CsaV3_2G009540 Cucumis sativus L. HOM05D006824 ORTHO05D008779 4.5e-62 242.3 211 55.9
TAR362G0347 Trochodendron aralioides HOM05D006824 ORTHO05D008779 5.9e-62 241.9 199 53.3
Aqoxy5G00154 Aquilegia oxysepala HOM05D006824 ORTHO05D008779 7.8e-62 241.5 196 54.6
PSO170G6807 Papaver somniferum HOM05D006824 ORTHO05D008779 7.8e-62 241.5 192 56.2
CDE02G0053 Ceratophyllum demersum HOM05D006824 ORTHO05D008779 1.3e-61 240.7 190 56.3
SGA_v2.0_scaffold13G06472 Striga asiatica HOM05D006824 ORTHO05D008779 1.7e-61 240.4 223 49.8
Actinidia38928 Actinidia chinensis HOM05D006824 ORTHO05D008779 2.9e-61 239.6 192 55.7
DCAR_005505 Daucus carota HOM05D006824 ORTHO05D008779 2.9e-61 239.6 225 49.3
CSS0012922 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 3.8e-61 239.2 192 55.2
CSS0029100 Camellia sinensis var. sinensis HOM05D006824 ORTHO05D008779 3.8e-61 239.2 192 55.2
CiPaw.08G117600 Carya illinoinensis HOM05D006824 ORTHO05D008779 5.0e-61 238.8 202 51.5
COL.COLO4_19831 Corchorus olitorius HOM05D006824 ORTHO05D008779 5.0e-61 238.8 197 53.3
FAN02G3690 Fragaria x ananassa HOM05D006824 ORTHO05D008779 7.3e-60 235.0 192 55.7
Ciclev10012732m.g Citrus clementina HOM05D006824 ORTHO05D008779 9.5e-60 234.6 163 61.3
AT1G79790 Arabidopsis thaliana HOM05D006824 ORTHO05D008779 1.2e-59 234.2 262 46.2
FAN14G1847 Fragaria x ananassa HOM05D006824 ORTHO05D008779 2.3e-58 229.9 186 55.9
Nn1g09799 Nelumbo nucifera HOM05D006824 ORTHO05D008779 3.0e-58 229.6 167 58.1
SalBow3G1586 Salvia bowleyana HOM05D006824 ORTHO05D008779 4.0e-58 229.2 238 47.1
Migut.F01795 Erythranthe guttata HOM05D006824 ORTHO05D008779 1.5e-57 227.3 231 49.8
Lj1g0017863 Lotus japonicus HOM05D006824 ORTHO05D008779 4.4e-57 225.7 179 56.4
HPP92_009935 Vanilla planifolia HOM05D006824 ORTHO05D008779 4.9e-56 222.2 201 51.7
Cre13.g563200 Chlamydomonas reinhardtii HOM05D006824 ORTHO05D008779 1.8e-55 220.3 202 52.5
MELO3C025302.2 Cucumis melo HOM05D006824 ORTHO05D008779 3.5e-54 216.1 160 60.6
MELO3C008753.2 Cucumis melo HOM05D006824 ORTHO05D008779 1.0e-53 214.5 179 55.9
Ah.06g195550 Amaranthus hybridus HOM05D006824 ORTHO05D008779 2.5e-52 209.9 199 50.3
Cpa.g.sc123.9 Carica papaya HOM05D006824 ORTHO05D008779 4.3e-52 209.1 159 56.0
MBI08_g02107_MAGBIO Magnolia biondii HOM05D006824 ORTHO05D008779 6.8e-50 201.8 165 53.3
Nitab4.5_0009285g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 1.1e-47 194.5 177 54.8
Gohir.D03G049300 Gossypium hirsutum HOM05D006824 ORTHO05D008779 2.3e-45 186.8 143 56.6
Zm00001eb169290 Zea mays HOM05D006824 ORTHO05D008779 3.0e-45 186.4 159 56.0
Hma1.2p1_0171F.1_g075760 Hydrangea macrophylla HOM05D006824 ORTHO05D008779 1.9e-44 183.7 134 60.4
FvH4_6g00710 Fragaria vesca HOM05D006824 ORTHO05D008779 7.3e-44 181.8 133 59.4
PRCOL_00006210 Prasinoderma coloniale HOM05D006824 ORTHO05D008779 2.8e-43 179.9 233 42.9
SalBow3G1143 Salvia bowleyana HOM05D006824 ORTHO05D008779 1.2e-41 174.5 166 49.4
MD04G1242100 Malus domestica HOM05D006824 ORTHO05D008779 2.0e-33 147.1 107 60.7
QL01p046721 Quercus lobata HOM05D006824 ORTHO05D008779 3.4e-33 146.4 118 53.4
arahy.Tifrunner.gnm1.ann1.EIZA4A Arachis hypogaea HOM05D006824 ORTHO05D008779 7.6e-33 145.2 104 58.7
Hund07329 Selenicereus undatus HOM05D006824 ORTHO05D008779 9.2e-31 138.3 199 37.2
Nitab4.5_0008294g0020 Nicotiana tabacum HOM05D006824 ORTHO05D008779 5.6e-28 129.0 192 38.0
arahy.Tifrunner.gnm1.ann1.JEI8NT Arachis hypogaea HOM05D006824 ORTHO05D008779 1.1e-26 124.8 93 55.9
FAN09G4644 Fragaria x ananassa HOM05D006824 ORTHO05D008779 1.0e-21 108.2 79 58.2
Solyc05g055820.3 Solanum lycopersicum HOM05D006824 ORTHO05D008779 1.8e-18 97.4 84 51.2
CARHR074720 Cardamine hirsuta HOM05D006824 ORTHO05D008779 6.4e-16 89.0 81 46.9
SEGI_14412 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 7.1e-15 85.5 52 69.2
Psat3g104160 Pisum sativum HOM05D006824 ORTHO05D008779 9.3e-15 85.1 60 58.3
ATR0824G111 Amborella trichopoda HOM05D006824 ORTHO05D008779 1.1e-12 78.2 52 63.5
arahy.Tifrunner.gnm1.ann1.X7EDXL Arachis hypogaea HOM05D006824 ORTHO05D021501 1.6e-11 74.3 53 58.5
MD04G1242000 Malus domestica HOM05D006824 ORTHO05D008779 2.8e-11 73.6 61 54.1
SEGI_33071 Sequoiadendron giganteum HOM05D006824 ORTHO05D008779 2.4e-10 70.5 69 47.8
ATR0263G001 Amborella trichopoda HOM05D006824 ORTHO05D008779 6.9e-10 68.9 61 52.5
FAN09G1422 Fragaria x ananassa HOM05D001170 ORTHO05D002759 3.8e-08 63.2 59 49.2
AagrBONN_evm.TU.Sc2ySwM_368.137 Anthoceros agrestis HOM05D022947 ORTHO05D023489 2.4e-07 60.5 153 24.8
AagrBONN_evm.TU.Sc2ySwM_368.140 Anthoceros agrestis HOM05D022947 ORTHO05D023489 2.4e-07 60.5 153 24.8
AagrBONN_evm.TU.Sc2ySwM_368.930 Anthoceros agrestis HOM05D022947 ORTHO05D023489 1.2e-06 58.2 153 24.8
arahy.Tifrunner.gnm1.ann1.LN2II4 Arachis hypogaea HOM05D006661 ORTHO05D021501 1.6e-06 57.8 68 42.6
arahy.Tifrunner.gnm1.ann1.0X0W56 Arachis hypogaea HOM05D006824 ORTHO05D021501 2.7e-06 57.0 39 61.5
arahy.Tifrunner.gnm1.ann1.2JVF5K Arachis hypogaea HOM05D001175 ORTHO05D021501 2.7e-06 57.0 39 61.5
arahy.Tifrunner.gnm1.ann1.96LZZJ Arachis hypogaea HOM05D006824 ORTHO05D021501 2.7e-06 57.0 39 61.5
arahy.Tifrunner.gnm1.ann1.DM3ST4 Arachis hypogaea HOM05D006824 ORTHO05D021501 2.7e-06 57.0 39 61.5


User provided reference genes

Program Settings