Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 0.0e+00 2521.1 1379 100.0
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 0.0e+00 1694.1 1399 69.5
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.3e-190 669.8 1248 36.9
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 2.6e-187 660.6 1297 37.9
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 9.7e-182 642.1 1252 37.0
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 2.9e-170 604.0 1215 35.4
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 1.5e-166 591.7 1176 35.2
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 4.8e-165 586.6 1121 36.1
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 5.9e-163 579.7 1231 35.2
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 2.2e-162 577.8 1340 33.3
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 8.5e-162 575.9 1273 36.7
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 1.4e-159 568.5 1234 35.4
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 1.5e-158 565.1 1195 34.6
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 2.0e-158 564.7 1193 33.4
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 1.3e-157 562.0 1232 34.4
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 1.7e-157 561.6 1222 35.3
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 2.8e-157 560.8 1186 33.5
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 3.7e-157 560.5 1286 33.8
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 6.3e-157 559.7 1229 33.7
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 2.4e-156 557.8 1229 35.9
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 2.4e-156 557.8 1192 35.2
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 4.1e-156 557.0 1227 33.3
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 4.1e-156 557.0 1191 35.1
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 4.1e-156 557.0 1190 34.9
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 5.3e-156 556.6 1329 33.6
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 7.0e-156 556.2 1208 34.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 7.0e-156 556.2 1188 35.0
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 1.2e-155 555.4 1216 34.3
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 1.6e-155 555.1 1251 34.6
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 1.6e-155 555.1 1229 34.3
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 4.5e-155 553.5 1206 33.6
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 5.9e-155 553.1 1195 33.7
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 5.9e-155 553.1 1215 34.7
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 7.7e-155 552.7 1192 33.9
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 1.0e-154 552.4 1210 35.4
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 1.0e-154 552.4 1217 34.9
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 1.0e-154 552.4 1191 34.8
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.3e-154 552.0 1229 33.9
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.7e-154 551.6 1229 34.9
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.2e-154 551.2 1197 33.2
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 2.9e-154 550.8 1234 34.1
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 1.5e-153 548.5 1200 34.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 3.2e-153 547.4 1255 34.1
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 1.2e-152 545.4 1185 35.1
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 1.6e-152 545.0 1207 34.9
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 3.6e-152 543.9 1262 33.9
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 4.7e-152 543.5 1181 34.9
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 6.1e-152 543.1 1251 33.1
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 6.1e-152 543.1 1210 33.9
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 1.0e-151 542.3 1235 33.4
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 1.0e-151 542.3 1225 35.4
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 1.0e-151 542.3 1191 33.8
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 1.0e-151 542.3 1208 33.4
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 1.4e-151 542.0 1210 34.1
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.4e-151 542.0 1192 34.7
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.0e-151 540.8 1210 33.6
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 1.2e-150 538.9 1228 34.6
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 1.2e-150 538.9 1255 33.9
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 1.2e-150 538.9 1213 34.7
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.0e-150 538.1 1212 33.5
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 2.0e-150 538.1 1224 36.2
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 3.4e-150 537.3 1202 33.5
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 4.4e-150 537.0 1225 33.6
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 5.7e-150 536.6 1272 34.6
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 5.7e-150 536.6 1307 32.4
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 9.8e-150 535.8 1239 34.2
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-149 535.4 1194 34.8
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 1.7e-149 535.0 1243 35.1
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 1.4e-148 531.9 1223 34.8
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 1.4e-148 531.9 1232 32.1
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 3.1e-148 530.8 1195 34.1
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 5.4e-148 530.0 1218 34.5
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 7.7e-147 526.2 1245 33.8
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 1.0e-146 525.8 1235 34.0
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 2.3e-146 524.6 1261 34.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 2.9e-146 524.2 1157 33.7
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 5.0e-146 523.5 1234 34.8
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 1.1e-145 522.3 1210 33.6
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.9e-145 521.5 1242 34.9
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 3.2e-145 520.8 1291 32.2
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 5.5e-145 520.0 1223 35.2
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 2.8e-144 517.7 1209 33.8
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 1.8e-143 515.0 1200 31.9
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 4.0e-143 513.8 1227 35.1
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 4.0e-143 513.8 1227 35.1
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 5.2e-143 513.5 1239 34.1
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 1.5e-142 511.9 1179 33.4
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 1.5e-142 511.9 1203 32.9
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 2.6e-142 511.1 1389 34.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 2.6e-142 511.1 1215 32.9
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.6e-142 511.1 1211 33.3
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 5.7e-142 510.0 1216 33.6
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 5.7e-142 510.0 1216 33.6
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 3.7e-141 507.3 1233 33.7
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 6.3e-141 506.5 1271 32.7
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 2.4e-140 504.6 1194 32.9
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 4.1e-140 503.8 1236 32.3
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 5.4e-140 503.4 1237 33.1
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 7.0e-140 503.1 1201 33.0
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 1.2e-139 502.3 1238 33.1
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 2.7e-139 501.1 1237 34.4
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 8.0e-136 489.6 1110 34.4
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 2.2e-133 481.5 1204 32.1
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 3.7e-133 480.7 1288 32.4
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 1.2e-131 475.7 1238 30.5
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 3.6e-128 464.2 1188 31.1
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 1.8e-127 461.8 1208 30.5
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 4.4e-126 457.2 1203 32.2
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.4e-124 451.4 1231 29.2
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 3.2e-124 451.1 1196 31.6
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 3.9e-122 444.1 1195 29.7
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 2.2e-117 428.3 1280 29.1
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 3.7e-117 427.6 1048 34.3
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 6.4e-117 426.8 1191 31.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 2.4e-100 371.7 702 34.9
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 6.6e-98 363.6 577 38.1
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 3.8e-85 321.2 957 30.2
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.8e-64 251.9 1244 27.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 1.7e-61 242.7 1245 23.5
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-57 229.9 398 35.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 1.5e-57 229.6 547 30.3
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 4.8e-48 198.0 534 35.4
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 9.4e-44 183.7 837 27.8
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 3.6e-43 181.8 1236 26.0
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 7.7e-38 164.1 482 31.5
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 1.1e-36 160.2 716 26.7
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 5.2e-34 151.4 492 32.9
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 3.4e-25 122.1 281 32.0
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 1.1e-23 117.1 269 31.2
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 9.2e-23 114.0 220 33.2
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.1e-20 107.1 144 40.3
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 1.5e-20 106.7 144 40.3
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 1.3e-16 93.6 194 36.1
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 5.4e-15 88.2 320 28.1
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.5e-12 77.4 61 63.9
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.2e-07 60.8 71 42.3
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.7e-06 59.3 113 33.6


User provided reference genes

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