Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_9770 Physcomitrium patens HOM05D003709 ORTHO05D004364 1.6e-92 342.8 185 100.0
Mapoly0009s0017 Marchantia polymorpha HOM05D003709 ORTHO05D004364 1.1e-35 154.1 148 56.8
Nitab4.5_0001801g0070 Nicotiana tabacum HOM05D003709 ORTHO05D004364 6.9e-35 151.4 165 49.1
Peaxi162Scf00096g00098 Petunia axillaris HOM05D003709 ORTHO05D004364 5.9e-34 148.3 167 50.3
CAN.G841.14 Capsicum annuum HOM05D003709 ORTHO05D004364 1.3e-33 147.1 175 47.4
GSVIVG01033901001 Vitis vinifera HOM05D003709 ORTHO05D004364 3.8e-33 145.6 152 52.6
HanXRQChr04g0114081 Helianthus annuus HOM05D003709 ORTHO05D004364 8.5e-33 144.4 150 52.0
Lj1C125T5 Lonicera japonica HOM05D003709 ORTHO05D004364 1.9e-32 143.3 154 51.9
DCAR_020733 Daucus carota HOM05D003709 ORTHO05D004364 2.5e-32 142.9 153 50.3
Lalb_Chr20g0111541 Lupinus albus HOM05D003709 ORTHO05D004364 2.5e-32 142.9 150 53.3
FAN15G3210 Fragaria x ananassa HOM05D003709 ORTHO05D004364 3.2e-32 142.5 153 51.6
Glyma.19G196500 Glycine max HOM05D003709 ORTHO05D004364 4.2e-32 142.1 152 53.9
FAN27G1255 Fragaria x ananassa HOM05D003709 ORTHO05D004364 5.5e-32 141.7 153 51.0
Phvul.001G193000 Phaseolus vulgaris HOM05D003709 ORTHO05D004364 5.5e-32 141.7 150 52.7
QL07p038048 Quercus lobata HOM05D003709 ORTHO05D004364 5.5e-32 141.7 153 54.2
CDE04G0652 Ceratophyllum demersum HOM05D003709 ORTHO05D004364 7.2e-32 141.4 148 50.7
FvH4_2g10910 Fragaria vesca HOM05D003709 ORTHO05D004364 7.2e-32 141.4 153 51.0
FAN20G0151 Fragaria x ananassa HOM05D003709 ORTHO05D004364 7.2e-32 141.4 153 51.0
Oeu007203.1 Olea europaea HOM05D003709 ORTHO05D004364 7.2e-32 141.4 150 53.3
VMungo1383G1751 Vigna mungo HOM05D003709 ORTHO05D004364 7.2e-32 141.4 158 51.9
Cc06_g06250 Coffea canephora HOM05D003709 ORTHO05D004364 9.4e-32 141.0 150 52.7
Aqoxy4G02712 Aquilegia oxysepala HOM05D003709 ORTHO05D004364 1.2e-31 140.6 167 46.1
CANSAT64G1889 Cannabis sativa HOM05D003709 ORTHO05D004364 1.2e-31 140.6 150 51.3
Dinv31727 Davidia involucrata HOM05D003709 ORTHO05D004364 1.6e-31 140.2 150 51.3
Eucgr.A02626 Eucalyptus grandis HOM05D003709 ORTHO05D004364 1.6e-31 140.2 150 53.3
Sopen10g032700 Solanum pennellii HOM05D003709 ORTHO05D004364 1.6e-31 140.2 168 47.0
TWI77G0334 Tripterygium wilfordii HOM05D003709 ORTHO05D004364 1.6e-31 140.2 151 55.6
HanXRQChr08g0228531 Helianthus annuus HOM05D003709 ORTHO05D004364 2.1e-31 139.8 150 50.0
PGSC0003DMG400028247 Solanum tuberosum HOM05D003709 ORTHO05D004364 2.1e-31 139.8 166 47.6
EL10Ac7g16841 Beta vulgaris HOM05D003709 ORTHO05D004364 2.7e-31 139.4 155 52.9
EL10Ac7g16842 Beta vulgaris HOM05D003709 ORTHO05D004364 2.7e-31 139.4 155 52.9
Duzib093G0911 Durio zibethinus HOM05D003709 ORTHO05D004364 3.6e-31 139.0 150 51.3
ECA247G0210 Erigeron canadensis HOM05D003709 ORTHO05D004364 3.6e-31 139.0 153 52.3
PGR004G2656 Punica granatum HOM05D003709 ORTHO05D004364 3.6e-31 139.0 153 52.9
Solyc10g083220.3 Solanum lycopersicum HOM05D003709 ORTHO05D004364 3.6e-31 139.0 168 45.8
FAN24G0281 Fragaria x ananassa HOM05D003709 ORTHO05D004364 6.1e-31 138.3 153 50.3
Ciclev10013818m.g Citrus clementina HOM05D003709 ORTHO05D004364 7.9e-31 137.9 152 50.7
Gohir.D09G133000 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.9e-31 137.9 150 51.3
MD10G1058500 Malus domestica HOM05D003709 ORTHO05D004364 7.9e-31 137.9 155 49.0
Manes.08G029100 Manihot esculenta HOM05D003709 ORTHO05D004364 7.9e-31 137.9 154 50.6
THA.LOC104803461 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 7.9e-31 137.9 150 53.3
THA.LOC104826817 Tarenaya hassleriana HOM05D003709 ORTHO05D004364 7.9e-31 137.9 150 53.3
vmacro07432 Vaccinium macrocarpon HOM05D003709 ORTHO05D004364 7.9e-31 137.9 150 52.0
Ca_09030_v3 Cicer arietinum L. HOM05D003709 ORTHO05D004364 1.0e-30 137.5 152 52.0
Nn6g34801 Nelumbo nucifera HOM05D003709 ORTHO05D004364 1.0e-30 137.5 153 49.7
Nitab4.5_0005187g0010 Nicotiana tabacum HOM05D003709 ORTHO05D004364 1.0e-30 137.5 150 51.3
Gohir.A09G141700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-30 137.1 150 51.3
MBI17_g01496_MAGBIO Magnolia biondii HOM05D003709 ORTHO05D004364 1.4e-30 137.1 144 50.7
Atru.chr8.1435 Acer truncatum HOM05D003709 ORTHO05D004364 1.8e-30 136.7 150 50.0
MSTRG.5871 Avicennia marina HOM05D003709 ORTHO05D004364 1.8e-30 136.7 150 50.7
Gorai.006G152500 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.8e-30 136.7 150 50.7
Lsat_1_v5_gn_9_14520 Lactuca sativa HOM05D003709 ORTHO05D004364 1.8e-30 136.7 150 49.3
CSS0019397 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.0e-30 136.0 150 52.0
CSS0033506 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 3.0e-30 136.0 150 51.3
Thecc.05G096700 Theobroma cacao HOM05D003709 ORTHO05D004364 3.0e-30 136.0 150 49.3
HPP92_028584 Vanilla planifolia HOM05D003709 ORTHO05D004364 3.0e-30 136.0 155 52.3
Actinidia12698 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.2e-30 135.2 151 51.7
Actinidia18412 Actinidia chinensis HOM05D003709 ORTHO05D004364 5.2e-30 135.2 151 51.7
Cpa.g.c29173.2 Carica papaya HOM05D003709 ORTHO05D004364 5.2e-30 135.2 150 50.0
CSS0048031 Camellia sinensis var. sinensis HOM05D003709 ORTHO05D004364 6.7e-30 134.8 150 51.3
MD05G1051100 Malus domestica HOM05D003709 ORTHO05D004364 6.7e-30 134.8 156 51.3
ClCG03G000710 Citrullus lanatus HOM05D003709 ORTHO05D004364 1.5e-29 133.7 152 49.3
Actinidia05396 Actinidia chinensis HOM05D003709 ORTHO05D004364 2.0e-29 133.3 146 50.7
MELO3C009499.2 Cucumis melo HOM05D003709 ORTHO05D004364 2.0e-29 133.3 152 49.3
Ciclev10012932m.g Citrus clementina HOM05D003709 ORTHO05D004364 2.6e-29 132.9 152 49.3
Hma1.2p1_1724F.1_g299425 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 2.6e-29 132.9 142 53.5
Prupe.8G077900 Prunus persica HOM05D003709 ORTHO05D004364 2.6e-29 132.9 153 50.3
Sed0021250 Sechium edule HOM05D003709 ORTHO05D004364 2.6e-29 132.9 150 50.7
Gorai.007G357100 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.3e-29 132.5 150 48.7
Glyma.03G198800 Glycine max HOM05D003709 ORTHO05D004364 4.4e-29 132.1 152 51.3
RcHm_v2.0_Chr6g0269071 Rosa chinensis HOM05D003709 ORTHO05D004364 4.4e-29 132.1 142 52.8
Potri.016G074700 Populus trichocarpa HOM05D003709 ORTHO05D004364 5.7e-29 131.7 153 47.1
arahy.Tifrunner.gnm1.ann1.VRIY4R Arachis hypogaea HOM05D003709 ORTHO05D004364 7.4e-29 131.3 149 52.3
Hma1.2p1_0245F.1_g101590 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 9.7e-29 131.0 152 51.3
ATR0315G087 Amborella trichopoda HOM05D003709 ORTHO05D004364 1.3e-28 130.6 143 52.4
AagrBONN_evm.TU.Sc2ySwM_228.2513 Anthoceros agrestis HOM05D003709 ORTHO05D004364 1.3e-28 130.6 140 54.3
Lj2g0024912 Lotus japonicus HOM05D003709 ORTHO05D004364 1.3e-28 130.6 150 48.0
PSO357G0160 Papaver somniferum HOM05D003709 ORTHO05D004364 1.3e-28 130.6 149 49.7
Psat3g030960 Pisum sativum HOM05D003709 ORTHO05D004364 1.3e-28 130.6 147 49.0
CsaV3_3G037560 Cucumis sativus L. HOM05D003709 ORTHO05D004364 1.7e-28 130.2 153 49.0
arahy.Tifrunner.gnm1.ann1.K65CIQ Arachis hypogaea HOM05D003709 ORTHO05D004364 2.2e-28 129.8 149 51.7
Migut.J00663 Erythranthe guttata HOM05D003709 ORTHO05D004364 2.2e-28 129.8 152 48.0
Sabra16G0080200 Salix brachista HOM05D003709 ORTHO05D004364 2.2e-28 129.8 154 47.4
Aa31sc52G10 Aethionema arabicum HOM05D003709 ORTHO05D004364 4.8e-28 128.6 151 49.0
PSO339G2742 Papaver somniferum HOM05D003709 ORTHO05D004364 6.3e-28 128.3 150 48.7
Sabra06G0074500 Salix brachista HOM05D003709 ORTHO05D004364 8.2e-28 127.9 154 46.8
Medtr7g105350 Medicago truncatula HOM05D003709 ORTHO05D004364 1.1e-27 127.5 152 50.7
SGA_v2.0_scaffold13G06687 Striga asiatica HOM05D003709 ORTHO05D004364 1.1e-27 127.5 142 52.8
TPR.G23331 Trifolium pratense HOM05D003709 ORTHO05D004364 2.4e-27 126.3 150 47.3
Haze_19671 Corylus avellana HOM05D003709 ORTHO05D004364 9.1e-27 124.4 157 46.5
Gohir.A13G235900 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.1e-27 124.4 137 50.4
Ah.15g090600 Amaranthus hybridus HOM05D003709 ORTHO05D004364 1.2e-26 124.0 185 43.8
BcaC06g32330 Brassica carinata HOM05D003709 ORTHO05D004364 1.2e-26 124.0 154 46.1
BcaC06g32333 Brassica carinata HOM05D003709 ORTHO05D004364 1.2e-26 124.0 154 46.1
A10p30240 Brassica napus HOM05D003709 ORTHO05D004364 1.2e-26 124.0 153 45.1
C09p70650 Brassica napus HOM05D003709 ORTHO05D004364 1.2e-26 124.0 154 46.1
BolC9t59821H Brassica oleracea HOM05D003709 ORTHO05D004364 1.2e-26 124.0 154 46.1
BraA10t45062Z Brassica rapa HOM05D003709 ORTHO05D004364 1.2e-26 124.0 153 45.1
Os05g0112750 Oryza sativa ssp. japonica HOM05D003709 ORTHO05D004364 1.6e-26 123.6 146 47.9
BcaB01g05734 Brassica carinata HOM05D003709 ORTHO05D004364 4.5e-26 122.1 153 45.1
CARHR206940 Cardamine hirsuta HOM05D003709 ORTHO05D004364 5.9e-26 121.7 148 45.3
CiPaw.10G014600 Carya illinoinensis HOM05D003709 ORTHO05D004364 5.9e-26 121.7 139 48.2
Gohir.A04G147400 Gossypium hirsutum HOM05D003709 ORTHO05D004364 7.7e-26 121.3 129 51.9
AL6G16240 Arabidopsis lyrata HOM05D003709 ORTHO05D004364 1.0e-25 120.9 153 43.8
Sp6g36640 Schrenkiella parvula HOM05D003709 ORTHO05D004364 1.0e-25 120.9 153 44.4
Thhalv10014881m.g Eutrema salsugineum HOM05D003709 ORTHO05D004364 1.3e-25 120.6 153 44.4
A03p02630 Brassica napus HOM05D003709 ORTHO05D004364 1.7e-25 120.2 172 41.9
BraA03t09624Z Brassica rapa HOM05D003709 ORTHO05D004364 1.7e-25 120.2 172 41.9
Carub.0006s0511 Capsella rubella HOM05D003709 ORTHO05D004364 1.7e-25 120.2 154 44.8
unitig_744.g24704 Utricularia gibba HOM05D003709 ORTHO05D004364 2.2e-25 119.8 176 44.3
AT5G06240 Arabidopsis thaliana HOM05D003709 ORTHO05D004364 3.8e-25 119.0 153 43.8
Rhsim03G0069600 Rhododendron simsii HOM05D003709 ORTHO05D004364 1.1e-24 117.5 188 40.4
Zm00001eb266720 Zea mays HOM05D003709 ORTHO05D004364 2.5e-24 116.3 155 45.8
Gorai.012G000500 Gossypium raimondii HOM05D003709 ORTHO05D004364 8.0e-23 111.3 173 42.2
CBR_g45657 Chara braunii HOM05D003709 ORTHO05D004364 4.0e-22 109.0 151 45.7
Gorai.002G197000 Gossypium raimondii HOM05D003709 ORTHO05D004364 1.5e-21 107.1 146 44.5
BcaB01g05985 Brassica carinata HOM05D003709 ORTHO05D004364 2.6e-21 106.3 173 38.7
Gohir.D04G000040 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.0e-17 92.0 153 39.9
SMO197G0068 Selaginella moellendorffii HOM05D003709 ORTHO05D004364 9.4e-16 87.8 144 38.9
Gorai.004G000400 Gossypium raimondii HOM05D003709 ORTHO05D004364 3.6e-15 85.9 101 47.5
AUR62006246 Chenopodium quinoa HOM05D003709 ORTHO05D004364 4.7e-15 85.5 104 45.2
AUR62028486 Chenopodium quinoa HOM05D003709 ORTHO05D004364 4.7e-15 85.5 104 45.2
Gohir.D02G000500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.0e-15 84.7 152 39.5
TAR623G0195 Trochodendron aralioides HOM05D003709 ORTHO05D004364 8.8e-14 81.3 81 51.9
Aa31LG11G7240 Aethionema arabicum HOM05D003709 ORTHO05D004364 1.2e-13 80.9 95 51.6
Gohir.D01G158750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.5e-13 80.5 152 41.4
Gohir.A01G177700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.6e-13 79.7 102 44.1
Gohir.A10G101550 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.8e-13 77.8 102 44.1
Gohir.A13G149700 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.8e-13 77.8 111 42.3
Sc20g0006470 Simmondsia chinensis HOM05D003709 ORTHO05D004364 1.3e-12 77.4 109 44.0
Manes.09G051450 Manihot esculenta HOM05D003709 ORTHO05D004364 2.2e-12 76.6 77 51.9
Gorai.006G066600 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.3e-12 75.1 48 68.8
Gohir.A09G000259 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.1e-11 74.3 52 63.5
Lalb_Chr25g0288201 Lupinus albus HOM05D003709 ORTHO05D004364 1.4e-11 73.9 104 46.2
COL.COLO4_29661 Corchorus olitorius HOM05D003709 ORTHO05D004364 3.1e-11 72.8 49 65.3
Hma1.2p1_2017F.1_g311180 Hydrangea macrophylla HOM05D003709 ORTHO05D004364 7.0e-11 71.6 48 68.8
Actinidia27230 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.6e-10 70.5 104 46.2
Actinidia28628 Actinidia chinensis HOM05D003709 ORTHO05D004364 1.6e-10 70.5 104 46.2
Gohir.1Z049729 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.5e-10 69.3 77 49.4
COL.COLO4_29662 Corchorus olitorius HOM05D003709 ORTHO05D004364 5.9e-10 68.6 104 42.3
Actinidia37294 Actinidia chinensis HOM05D003709 ORTHO05D004364 7.7e-10 68.2 100 46.0
Gohir.A03G211700 Gossypium hirsutum HOM05D001759 ORTHO05D004364 1.0e-09 67.8 53 64.2
Gohir.D02G000150 Gossypium hirsutum HOM05D003709 ORTHO05D004364 3.8e-09 65.9 49 59.2
Gohir.1Z049623 Gossypium hirsutum HOM05D003709 ORTHO05D004364 5.0e-09 65.5 77 48.1
Peaxi162Scf00013g00154 Petunia axillaris HOM05D003709 ORTHO05D004364 5.0e-09 65.5 47 59.6
Dinv21156 Davidia involucrata HOM05D003709 ORTHO05D004364 8.6e-09 64.7 95 44.2
Gohir.D11G326500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.5e-08 63.2 105 38.1
Lalb_Chr25g0288191 Lupinus albus HOM05D003709 ORTHO05D004364 2.5e-08 63.2 40 72.5
Gohir.A01G093450 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.2e-08 62.4 41 65.9
Gohir.A01G093475 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.2e-08 62.4 41 65.9
Gohir.A06G142750 Gossypium hirsutum HOM05D003709 ORTHO05D004364 4.2e-08 62.4 37 70.3
MD07G1268900 Malus domestica HOM05D003709 ORTHO05D004364 4.2e-08 62.4 101 39.6
Sabra16G0077300 Salix brachista HOM05D003709 ORTHO05D004364 5.5e-08 62.0 103 38.8
Gohir.D04G000065 Gossypium hirsutum HOM05D003709 ORTHO05D004364 9.5e-08 61.2 87 43.7
Potri.006G208200 Populus trichocarpa HOM05D003709 ORTHO05D004364 9.5e-08 61.2 47 63.8
C03p03020 Brassica napus HOM05D003709 ORTHO05D004364 1.2e-07 60.8 49 55.1
MD13G1200900 Malus domestica HOM05D003709 ORTHO05D004364 1.6e-07 60.5 101 37.6
Gohir.D11G176500 Gossypium hirsutum HOM05D003709 ORTHO05D004364 2.1e-07 60.1 61 49.2
Gorai.007G188700 Gossypium raimondii HOM05D003709 ORTHO05D004364 6.1e-07 58.5 87 42.5
Gohir.A12G001133 Gossypium hirsutum HOM05D003709 ORTHO05D004364 8.0e-07 58.2 73 45.2
Gohir.A11G282813 Gossypium hirsutum HOM05D003709 ORTHO05D004364 1.4e-06 57.4 37 73.0
Haze_19660 Corylus avellana HOM05D003709 ORTHO05D004364 2.3e-06 56.6 130 31.5
Hund28303 Selenicereus undatus HOM05D003709 ORTHO05D004364 4.0e-06 55.8 87 44.8
ClCG10G018670 Citrullus lanatus HOM05D003709 ORTHO05D004364 6.8e-06 55.1 65 43.1


User provided reference genes

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