Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 0.0e+00 1571.2 927 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.3e-193 681.0 882 48.8
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.7e-177 627.5 840 51.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 1.5e-162 577.8 868 42.6
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 3.1e-160 570.1 874 42.4
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 5.0e-158 562.8 863 40.1
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 2.7e-151 540.4 878 41.6
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.9e-150 537.0 882 39.6
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.8e-150 536.6 871 41.4
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.5e-149 533.9 880 38.4
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.5e-149 533.9 886 40.4
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 3.3e-149 533.5 881 40.2
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 7.3e-149 532.3 889 39.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 9.5e-149 531.9 901 38.3
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 9.5e-149 531.9 891 38.2
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.2e-148 531.6 875 37.7
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 3.6e-148 530.0 876 38.2
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 3.6e-148 530.0 881 40.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.6e-148 530.0 863 38.6
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 4.7e-148 529.6 887 39.6
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 8.0e-148 528.9 881 40.0
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 1.0e-147 528.5 887 39.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.8e-147 527.7 878 42.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 3.0e-147 526.9 857 43.3
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 3.0e-147 526.9 883 37.9
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.0e-147 526.9 885 38.5
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 6.8e-147 525.8 901 37.7
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.6e-146 523.9 864 40.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 2.6e-146 523.9 872 43.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 3.4e-146 523.5 867 41.9
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 7.5e-146 522.3 866 37.9
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 9.8e-146 521.9 879 40.3
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 1.3e-145 521.5 877 38.7
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 1.3e-145 521.5 869 37.6
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.7e-145 521.2 883 40.1
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 3.7e-145 520.0 884 38.6
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 4.9e-145 519.6 893 37.7
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 4.9e-145 519.6 884 38.7
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 6.4e-145 519.2 874 38.9
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 8.3e-145 518.8 867 39.3
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 8.3e-145 518.8 881 39.3
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-144 518.5 884 38.7
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 3.2e-144 516.9 908 37.6
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.0e-143 514.2 890 38.7
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 2.7e-143 513.8 883 37.9
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 1.0e-142 511.9 868 38.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.0e-142 511.9 884 37.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 1.0e-142 511.9 874 43.2
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.3e-142 510.8 889 36.8
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 5.0e-142 509.6 891 41.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 5.0e-142 509.6 872 41.3
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 8.6e-142 508.8 893 37.7
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 8.6e-142 508.8 902 40.1
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-141 508.4 894 38.0
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 1.9e-141 507.7 900 37.2
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.3e-141 506.9 878 37.2
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 4.3e-141 506.5 883 38.5
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 5.6e-141 506.1 875 38.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 7.3e-141 505.8 863 40.3
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 7.3e-141 505.8 863 40.3
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 9.5e-141 505.4 863 39.2
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 9.5e-141 505.4 863 39.2
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 9.5e-141 505.4 863 39.3
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-140 505.0 886 37.6
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.6e-140 504.6 886 38.7
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 1.6e-140 504.6 904 37.3
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.6e-140 504.6 875 37.3
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-140 503.8 882 37.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 2.8e-140 503.8 894 37.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 4.7e-140 503.1 867 38.8
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 8.0e-140 502.3 858 38.0
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 8.0e-140 502.3 895 39.2
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.0e-139 501.9 896 36.4
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.4e-139 501.5 884 36.5
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 2.3e-139 500.7 896 37.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.3e-139 500.7 871 39.8
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 6.8e-139 499.2 892 39.3
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.5e-138 498.0 891 37.4
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 3.4e-138 496.9 862 38.4
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.4e-138 496.9 871 36.6
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.8e-138 496.1 885 37.4
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 1.7e-137 494.6 871 38.3
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 2.2e-137 494.2 895 37.7
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.9e-137 493.8 885 37.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 1.9e-136 491.1 887 36.9
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 2.4e-136 490.7 885 38.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.7e-135 487.3 888 39.5
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 1.7e-134 484.6 883 36.9
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 2.3e-134 484.2 862 39.6
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.3e-133 480.3 893 37.1
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 5.6e-133 479.6 817 40.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.2e-130 471.9 885 37.7
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 1.2e-127 461.8 870 37.7
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.9e-125 454.5 594 44.8
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 9.5e-125 452.2 857 35.1
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 1.6e-124 451.4 877 36.0
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 2.8e-124 450.7 924 35.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 4.1e-120 436.8 707 40.7
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 4.1e-120 436.8 644 41.8
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.3e-118 431.0 873 37.1
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 5.1e-118 429.9 788 36.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 1.4e-115 421.8 959 33.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.6e-111 408.3 875 36.3
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 6.0e-111 406.4 873 33.9
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 6.9e-107 392.9 878 33.4
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 4.5e-98 363.6 628 40.1
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.7e-97 361.7 568 38.7
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.2e-87 328.9 635 38.1
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 3.9e-78 297.4 468 39.1
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 4.3e-77 293.9 962 31.1
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 6.7e-70 270.0 393 40.7
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.3e-67 260.4 493 39.4
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 2.0e-66 258.5 415 38.6
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 8.8e-62 243.0 405 36.5
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.4e-59 235.0 297 43.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 1.0e-54 219.5 299 42.5
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 2.8e-52 211.5 469 37.5
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.2e-50 206.1 428 33.9
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 9.4e-48 196.4 201 51.2
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 6.3e-44 183.7 352 36.1
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.1e-43 181.0 327 33.6
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.2e-39 169.5 603 29.2
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 6.8e-38 163.7 249 41.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 3.7e-36 157.9 156 53.2
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 1.4e-35 156.0 243 41.2
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-33 149.8 229 38.0
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 1.9e-32 145.6 176 45.5
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.8e-30 139.0 308 36.4
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 4.9e-28 131.0 954 24.8
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.9e-27 129.0 225 37.8
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 5.4e-27 127.5 281 37.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.1e-22 113.2 207 33.8
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.8e-22 110.5 139 40.3
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.0e-18 97.4 196 34.2
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 1.6e-15 89.4 113 46.0
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 8.1e-15 87.0 169 36.7
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 2.3e-14 85.5 182 33.5
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 4.0e-14 84.7 116 43.1
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 6.8e-14 84.0 116 40.5
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 5.8e-13 80.9 78 52.6
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.8e-13 80.9 178 30.3
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 9.9e-13 80.1 123 40.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 2.4e-11 75.5 105 41.0
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 5.4e-11 74.3 97 42.3
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.0e-09 68.6 100 38.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-07 63.2 68 47.1
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 4.7e-07 61.2 103 41.7
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-06 60.1 110 40.9
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.4e-06 59.7 171 28.1
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 4.0e-06 58.2 152 27.0


User provided reference genes

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