Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 2.3e-62 241.9 111 100.0
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 4.3e-24 114.8 83 67.5
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 4.3e-24 114.8 83 67.5
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 5.6e-24 114.4 83 67.5
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 7.4e-24 114.0 83 68.7
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 9.6e-24 113.6 83 67.5
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 9.6e-24 113.6 83 67.5
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 9.6e-24 113.6 83 66.3
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 9.6e-24 113.6 83 66.3
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.3e-23 113.2 83 67.5
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 1.3e-23 113.2 83 67.5
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 67.5
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 67.5
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 67.5
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 67.5
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 1.6e-23 112.8 84 65.5
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.6e-23 112.8 83 66.3
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 67.5
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 67.5
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 67.5
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.1e-23 112.5 83 66.3
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 2.8e-23 112.1 83 67.5
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.8e-23 112.1 83 67.5
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 2.8e-23 112.1 83 66.3
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 2.8e-23 112.1 83 66.3
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.7e-23 111.7 65 80.0
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 3.7e-23 111.7 65 80.0
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 3.7e-23 111.7 65 80.0
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.7e-23 111.7 65 80.0
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 66.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 67.5
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 3.7e-23 111.7 83 67.5
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.8e-23 111.3 68 76.5
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 4.8e-23 111.3 93 61.3
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 4.8e-23 111.3 83 65.1
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 4.8e-23 111.3 68 76.5
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 4.8e-23 111.3 68 76.5
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 4.8e-23 111.3 83 67.5
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 4.8e-23 111.3 68 76.5
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 4.8e-23 111.3 83 65.1
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 4.8e-23 111.3 83 67.5
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 6.2e-23 110.9 83 65.1
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 6.2e-23 110.9 83 66.3
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 6.2e-23 110.9 83 66.3
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 6.2e-23 110.9 83 66.3
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 6.2e-23 110.9 83 66.3
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 6.2e-23 110.9 65 80.0
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 80.0
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 8.2e-23 110.5 83 65.1
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 78.5
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 78.5
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 80.0
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 8.2e-23 110.5 83 65.1
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 80.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 80.0
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 8.2e-23 110.5 65 80.0
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 73.5
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.1e-22 110.2 68 76.5
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 1.1e-22 110.2 84 59.5
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 78.5
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 78.5
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 1.4e-22 109.8 65 80.0
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.8e-22 109.4 65 78.5
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 1.8e-22 109.4 65 78.5
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 1.8e-22 109.4 65 78.5
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.8e-22 109.4 83 65.1
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 2.4e-22 109.0 84 65.5
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.4e-22 109.0 83 63.9
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 3.1e-22 108.6 65 76.9
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 4.0e-22 108.2 65 78.5
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.0e-22 108.2 65 76.9
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 5.3e-22 107.8 65 78.5
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 5.3e-22 107.8 65 78.5
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 6.9e-22 107.5 83 62.7
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.2e-21 106.7 65 76.9
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 2.0e-21 105.9 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 2.6e-21 105.5 83 61.4
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 3.4e-21 105.1 65 75.4
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 4.5e-21 104.8 72 69.4
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 7.6e-21 104.0 65 75.4
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.3e-20 103.2 65 70.8
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 2.2e-20 102.4 68 69.1
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.2e-19 98.6 65 66.2
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 6.0e-18 94.4 63 71.4
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 5.1e-17 91.3 66 68.2
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.5e-13 79.7 47 76.6
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.7e-12 76.3 65 61.5
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 6.7e-09 64.3 62 45.2
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 4.1e-06 55.1 73 41.1


User provided reference genes

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