Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_6890 Physcomitrium patens HOM05D014505 ORTHO05D026046 4.0e-116 421.4 205 100.0
Pp3c3_6780 Physcomitrium patens HOM05D014505 ORTHO05D026046 5.6e-110 401.0 205 95.1
Pp3c3_6760 Physcomitrium patens HOM05D014505 ORTHO05D026046 5.5e-57 224.9 208 60.1
Pp3c13_3350 Physcomitrium patens HOM05D014505 ORTHO05D026046 3.2e-49 199.1 202 55.0
Pp3c13_3330 Physcomitrium patens HOM05D014505 ORTHO05D026046 3.9e-39 165.6 144 59.7
Pp3c5_25070 Physcomitrium patens HOM05D015359 ORTHO05D017075 3.5e-11 72.8 168 32.7
Pp3c25_11400 Physcomitrium patens HOM05D015359 ORTHO05D017075 7.8e-11 71.6 103 39.8
Pp3c6_3870 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.9e-10 69.7 154 35.1
Pp3c25_11340 Physcomitrium patens HOM05D014505 ORTHO05D030131 8.6e-10 68.2 128 30.5
Pp3c3_17970 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.5e-09 66.6 109 34.9
Pp3c25_11360 Physcomitrium patens HOM05D014505 ORTHO05D030131 4.3e-09 65.9 109 34.9
Pp3c5_14790 Physcomitrium patens HOM05D014505 ORTHO05D050340 9.5e-09 64.7 153 30.1
Pp3c25_11290 Physcomitrium patens HOM05D011764 ORTHO05D017075 1.6e-08 63.9 189 30.2
Mapoly0168s0010 Marchantia polymorpha HOM05D015359 ORTHO05D000300 6.1e-08 62.0 110 39.1
arahy.Tifrunner.gnm1.ann1.PE90UA Arachis hypogaea HOM05D000262 ORTHO05D005718 2.3e-07 60.1 59 45.8
Pp3c16_19790 Physcomitrium patens HOM05D014505 ORTHO05D000300 2.3e-07 60.1 109 30.3
Thhalv10026474m.g Eutrema salsugineum HOM05D000262 ORTHO05D000300 4.0e-07 59.3 72 43.1
AL7G16160 Arabidopsis lyrata HOM05D000262 ORTHO05D000300 5.2e-07 58.9 76 40.8
Duzib068G0734 Durio zibethinus HOM05D000262 ORTHO05D005718 6.8e-07 58.5 59 42.4
BcaB02g07861 Brassica carinata HOM05D000262 ORTHO05D005718 8.9e-07 58.2 78 39.7
Sp7g32830 Schrenkiella parvula HOM05D000262 ORTHO05D000300 8.9e-07 58.2 72 41.7
AT4G35060 Arabidopsis thaliana HOM05D000262 ORTHO05D000300 1.2e-06 57.8 72 40.3
Pp3c21_6960 Physcomitrium patens HOM05D020085 ORTHO05D311222 1.2e-06 57.8 116 32.8
BcaC08g44591 Brassica carinata HOM05D000262 ORTHO05D005718 1.5e-06 57.4 78 39.7
A07p21160 Brassica napus HOM05D000262 ORTHO05D005718 1.5e-06 57.4 78 39.7
C06p20620 Brassica napus HOM05D000262 ORTHO05D005718 1.5e-06 57.4 78 39.7
BraA07t29802Z Brassica rapa HOM05D000262 ORTHO05D005718 1.5e-06 57.4 78 39.7
Carub.0008s0837 Capsella rubella HOM05D000262 ORTHO05D005718 1.5e-06 57.4 80 38.8
CARHR213490 Cardamine hirsuta HOM05D000262 ORTHO05D005718 1.5e-06 57.4 78 39.7
Gohir.A08G108700 Gossypium hirsutum HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 42.4
Gohir.D08G121400 Gossypium hirsutum HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 42.4
Gohir.D12G243800 Gossypium hirsutum HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 40.7
Gorai.004G128100 Gossypium raimondii HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 42.4
Gorai.008G261300 Gossypium raimondii HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 40.7
Pp3c6_12850 Physcomitrium patens HOM05D015359 ORTHO05D050340 1.5e-06 57.4 211 28.0
unitig_62.g23262 Utricularia gibba HOM05D000262 ORTHO05D005718 1.5e-06 57.4 59 44.1
HPP92_022293 Vanilla planifolia HOM05D000262 ORTHO05D005718 1.5e-06 57.4 116 33.6
AL3G51430 Arabidopsis lyrata HOM05D000262 ORTHO05D005718 2.0e-06 57.0 116 34.5
CARHR243340 Cardamine hirsuta HOM05D000262 ORTHO05D000300 2.0e-06 57.0 72 40.3
Thhalv10027957m.g Eutrema salsugineum HOM05D000262 ORTHO05D005718 2.0e-06 57.0 78 39.7
Pp3c6_1500 Physcomitrium patens HOM05D015359 ORTHO05D017075 2.0e-06 57.0 196 30.1
Sp7g00010 Schrenkiella parvula HOM05D000262 ORTHO05D005718 2.0e-06 57.0 78 39.7
MSTRG.13691 Avicennia marina HOM05D000262 ORTHO05D005718 2.6e-06 56.6 59 42.4
A01p03510 Brassica napus HOM05D000262 ORTHO05D000300 3.4e-06 56.2 71 40.8
BraA01t00336Z Brassica rapa HOM05D000262 ORTHO05D000300 3.4e-06 56.2 71 40.8
COL.COLO4_10846 Corchorus olitorius HOM05D000262 ORTHO05D005718 3.4e-06 56.2 59 40.7
HanXRQChr14g0462111 Helianthus annuus HOM05D000262 ORTHO05D005718 3.4e-06 56.2 59 42.4
Medtr1g078090 Medicago truncatula HOM05D000262 ORTHO05D005718 3.4e-06 56.2 59 40.7
Thecc.03G215500 Theobroma cacao HOM05D000262 ORTHO05D005718 3.4e-06 56.2 59 40.7
HPP92_022267 Vanilla planifolia HOM05D000262 ORTHO05D000300 3.4e-06 56.2 101 34.7
CiPaw.06G012800 Carya illinoinensis HOM05D000262 ORTHO05D000300 4.4e-06 55.8 67 40.3
Ca_09960_v3 Cicer arietinum L. HOM05D000262 ORTHO05D005718 4.4e-06 55.8 59 40.7
Pp3c6_5260 Physcomitrium patens HOM05D011764 ORTHO05D017075 4.4e-06 55.8 185 27.0
Aa31LG2G15440 Aethionema arabicum HOM05D000262 ORTHO05D000300 5.7e-06 55.5 72 41.7
BcaNung00633 Brassica carinata HOM05D000262 ORTHO05D000300 5.7e-06 55.5 74 40.5
C01p03800 Brassica napus HOM05D000262 ORTHO05D000300 5.7e-06 55.5 74 40.5
BolC1t00372H Brassica oleracea HOM05D000262 ORTHO05D000300 5.7e-06 55.5 74 40.5
MELO3C005805.2 Cucumis melo HOM05D000262 ORTHO05D005718 5.7e-06 55.5 59 42.4
ECA246G3260 Erigeron canadensis HOM05D000262 ORTHO05D005718 5.7e-06 55.5 72 34.7
Aa31LG9G60 Aethionema arabicum HOM05D000262 ORTHO05D005718 7.5e-06 55.1 78 38.5
Oeu022024.1 Olea europaea HOM05D000262 ORTHO05D005718 7.5e-06 55.1 55 41.8
Potri.011G149500 Populus trichocarpa HOM05D000262 ORTHO05D005718 7.5e-06 55.1 59 40.7
GSVIVG01019700001 Vitis vinifera HOM05D000262 ORTHO05D005718 7.5e-06 55.1 59 39.0
CDE02G3827 Ceratophyllum demersum HOM05D000262 ORTHO05D005718 9.8e-06 54.7 59 40.7
Os03g0120400 Oryza sativa ssp. japonica HOM05D000262 ORTHO05D005718 9.8e-06 54.7 101 33.7
THA.LOC104809291 Tarenaya hassleriana HOM05D000262 ORTHO05D005718 9.8e-06 54.7 65 41.5
TPR.G10796 Trifolium pratense HOM05D000262 ORTHO05D005718 9.8e-06 54.7 50 46.0


User provided reference genes

Program Settings