Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 0.0e+00 1124.4 575 100.0
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 8.8e-145 518.1 555 49.0
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.1e-131 474.6 557 46.1
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.2e-119 433.7 565 42.8
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 3.1e-118 429.9 564 42.6
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 7.0e-118 428.7 564 42.4
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 1.2e-117 427.9 552 43.8
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 3.5e-117 426.4 522 43.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 7.7e-117 425.2 571 42.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.3e-116 423.7 545 42.6
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.5e-115 420.2 553 43.4
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 7.3e-115 418.7 552 42.2
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 9.5e-115 418.3 564 40.6
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 3.6e-114 416.4 567 41.3
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 8.0e-114 415.2 564 40.8
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 8.0e-114 415.2 549 41.7
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.0e-113 413.3 551 43.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 8.9e-113 411.8 548 42.2
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.2e-112 411.4 550 42.5
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 1.5e-112 411.0 561 41.4
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 5.7e-112 409.1 568 39.6
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 1.7e-111 407.5 558 42.3
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.2e-111 407.1 549 41.9
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.9e-111 406.8 553 41.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 2.9e-111 406.8 550 40.9
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 2.9e-111 406.8 545 42.0
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 4.9e-111 406.0 554 41.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 4.9e-111 406.0 546 41.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 6.4e-111 405.6 549 41.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 8.3e-111 405.2 550 41.8
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.1e-110 404.8 570 39.6
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.1e-110 404.8 560 41.6
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.1e-110 404.8 520 42.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 1.1e-110 404.8 522 42.1
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 1.1e-110 404.8 606 38.8
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.8e-110 404.1 565 40.2
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.4e-110 403.7 544 42.3
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 2.4e-110 403.7 565 41.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.4e-110 403.7 539 41.4
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 4.1e-110 402.9 557 40.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 4.1e-110 402.9 543 41.3
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 4.1e-110 402.9 564 40.8
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 5.4e-110 402.5 518 43.4
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 7.0e-110 402.1 554 41.2
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 9.2e-110 401.7 561 40.8
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 9.2e-110 401.7 564 41.0
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.2e-109 401.4 564 40.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.2e-109 401.4 548 41.6
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.0e-109 400.6 540 42.6
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.0e-109 400.6 558 43.5
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.7e-109 400.2 557 40.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 2.7e-109 400.2 564 41.3
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 4.6e-109 399.4 565 40.2
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 4.6e-109 399.4 565 40.0
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 7.8e-109 398.7 558 40.3
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 7.8e-109 398.7 579 39.6
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.0e-108 398.3 534 42.3
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 3.0e-108 396.7 578 39.6
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 3.9e-108 396.4 544 40.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 5.0e-108 396.0 563 40.3
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 6.6e-108 395.6 560 39.6
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 8.6e-108 395.2 526 40.5
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.6e-108 395.2 540 42.0
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.9e-107 394.0 538 41.6
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.9e-107 394.0 553 40.1
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 4.3e-107 392.9 520 42.3
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 4.3e-107 392.9 575 39.3
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.3e-107 392.1 548 40.0
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 9.5e-107 391.7 561 39.2
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.2e-106 391.3 566 40.3
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.6e-106 391.0 546 41.0
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 2.8e-106 390.2 558 39.8
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.6e-106 389.8 559 40.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 6.2e-106 389.0 477 43.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.0e-105 388.3 563 39.1
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 3.1e-105 386.7 531 40.7
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 4.0e-105 386.3 541 40.7
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 5.2e-105 386.0 527 41.2
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 8.9e-105 385.2 510 41.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 2.0e-104 384.0 518 40.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.0e-104 384.0 524 40.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.3e-103 381.3 552 40.2
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 2.9e-103 380.2 557 39.5
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.1e-102 378.3 498 41.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.7e-100 370.9 550 38.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.9e-100 369.8 499 41.3
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 8.6e-100 368.6 574 38.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.5e-99 367.9 564 38.7
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.9e-99 367.5 526 38.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.4e-96 356.7 524 39.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 9.8e-96 355.1 489 40.1
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.2e-93 348.2 551 37.6
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.7e-93 347.1 347 51.0
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.2e-90 338.2 492 39.2
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.1e-89 335.1 568 36.1
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.1e-89 333.6 576 37.5
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 5.2e-89 332.8 498 39.8
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 8.9e-89 332.0 715 31.5
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 8.9e-89 332.0 606 35.6
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 2.6e-88 330.5 550 35.6
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.3e-84 318.2 558 35.7
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.4e-81 308.1 587 34.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 1.9e-78 297.7 297 52.2
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.4e-78 296.2 363 40.2
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.8e-74 283.9 450 37.8
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 1.0e-55 222.2 210 55.7
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 6.5e-47 193.0 210 50.5
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 6.5e-47 193.0 344 33.4
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 1.6e-45 188.3 338 32.5
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.0e-44 184.1 177 54.2
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 8.2e-34 149.4 339 28.6
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 7.2e-30 136.3 116 61.2
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.0e-27 128.3 302 28.5
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 7.0e-25 119.8 565 23.5
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 7.0e-25 119.8 123 46.3
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.1e-22 112.5 257 31.1
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 9.4e-22 109.4 257 27.6
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 8.8e-20 102.8 240 31.7
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.4e-19 100.5 102 47.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.2e-15 88.2 212 29.7
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 5.5e-14 83.6 67 53.7
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.2e-13 82.4 189 29.1
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.6e-13 80.9 107 35.5
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.0e-12 77.8 130 36.9
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.4e-09 68.9 97 36.1
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 7.0e-09 66.6 344 23.5
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.0e-09 66.6 150 30.7
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-07 62.0 68 41.2


User provided reference genes

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