Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.2e-116 420.6 218 100.0
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.7e-104 382.9 218 89.9
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 5.2e-90 334.7 218 79.8
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-89 333.6 219 80.8
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 8.9e-74 280.8 229 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 9.9e-73 277.3 218 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.4e-71 273.5 218 68.8
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.0e-69 267.3 162 81.5
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 6.6e-69 264.6 158 82.3
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 6.6e-69 264.6 159 82.4
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.1e-68 263.8 205 69.3
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.5e-68 262.7 155 81.9
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.3e-68 261.9 210 66.2
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 5.6e-68 261.5 210 66.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 7.3e-68 261.2 149 84.6
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 7.3e-68 261.2 162 79.6
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 7.3e-68 261.2 153 83.0
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 9.6e-68 260.8 149 83.2
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 9.6e-68 260.8 149 83.9
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 9.6e-68 260.8 210 67.6
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 9.6e-68 260.8 156 81.4
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 9.6e-68 260.8 151 82.8
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 1.3e-67 260.4 150 82.7
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.3e-67 260.4 149 83.9
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.3e-67 260.4 158 81.6
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.6e-67 260.0 148 83.8
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-67 259.6 149 83.9
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.1e-67 259.6 149 83.9
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.1e-67 259.6 156 80.8
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.1e-67 259.6 149 83.9
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.1e-67 259.6 149 83.9
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.1e-67 259.6 165 77.6
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 2.8e-67 259.2 157 80.3
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.8e-67 259.2 170 77.1
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.8e-67 259.2 149 83.2
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.8e-67 259.2 216 65.7
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.6e-67 258.8 159 79.2
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 3.6e-67 258.8 156 82.1
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 3.6e-67 258.8 162 79.0
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.6e-67 258.8 153 82.4
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 3.6e-67 258.8 162 80.2
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.8e-67 258.5 148 83.1
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 4.8e-67 258.5 146 85.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 6.2e-67 258.1 155 81.9
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 6.2e-67 258.1 155 80.6
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 8.1e-67 257.7 152 81.6
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 8.1e-67 257.7 152 81.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 8.1e-67 257.7 152 81.6
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 8.1e-67 257.7 210 65.7
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 8.1e-67 257.7 218 67.0
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.1e-67 257.7 148 83.8
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 8.1e-67 257.7 162 80.2
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.1e-66 257.3 149 83.2
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.1e-66 257.3 170 75.9
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-66 257.3 170 76.5
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.1e-66 257.3 149 83.2
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.1e-66 257.3 208 65.4
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.1e-66 257.3 159 79.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.1e-66 257.3 210 65.7
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-66 257.3 212 65.1
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.4e-66 256.9 218 66.5
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.4e-66 256.9 152 81.6
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.4e-66 256.9 157 80.3
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 1.4e-66 256.9 161 78.9
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.4e-66 256.9 149 83.2
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.8e-66 256.5 170 75.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.8e-66 256.5 165 77.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.8e-66 256.5 161 78.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.8e-66 256.5 158 81.0
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.4e-66 256.1 149 82.6
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 2.4e-66 256.1 218 65.6
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 2.4e-66 256.1 162 78.4
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.4e-66 256.1 185 71.9
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.1e-66 255.8 215 66.0
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 3.1e-66 255.8 153 81.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 4.0e-66 255.4 218 64.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.0e-66 255.4 165 77.6
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 5.3e-66 255.0 156 80.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 5.3e-66 255.0 148 83.1
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.3e-66 255.0 148 83.1
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 5.3e-66 255.0 153 82.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 6.9e-66 254.6 149 81.9
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 6.9e-66 254.6 164 77.4
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 6.9e-66 254.6 164 77.4
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 6.9e-66 254.6 165 77.0
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 6.9e-66 254.6 225 65.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 6.9e-66 254.6 157 79.0
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 6.9e-66 254.6 149 82.6
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 9.0e-66 254.2 163 77.3
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 9.0e-66 254.2 163 77.3
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 9.0e-66 254.2 148 82.4
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 9.0e-66 254.2 165 77.6
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 9.0e-66 254.2 218 65.6
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 9.0e-66 254.2 172 73.8
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 9.0e-66 254.2 157 79.6
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 1.2e-65 253.8 218 65.6
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.2e-65 253.8 149 81.9
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.5e-65 253.4 149 81.9
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.5e-65 253.4 220 66.8
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.0e-65 253.1 166 77.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.6e-65 252.7 149 81.2
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 2.6e-65 252.7 147 82.3
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.6e-65 252.7 221 65.2
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 3.4e-65 252.3 144 84.0
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.5e-65 251.9 185 70.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 4.5e-65 251.9 185 70.8
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 4.5e-65 251.9 218 64.2
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 5.8e-65 251.5 213 64.8
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 7.6e-65 251.1 225 63.6
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 7.6e-65 251.1 165 74.5
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 7.6e-65 251.1 163 76.7
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 9.9e-65 250.8 156 76.9
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.9e-65 250.8 201 65.7
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 9.9e-65 250.8 216 65.3
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 2.9e-64 249.2 157 78.3
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.8e-64 248.8 185 70.3
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 6.4e-64 248.1 209 64.1
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.4e-64 247.7 139 86.3
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 8.4e-64 247.7 218 63.3
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.1e-63 247.3 218 62.4
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.4e-63 246.9 218 63.3
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 1.9e-63 246.5 218 62.8
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 3.2e-63 245.7 146 80.8
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-63 245.4 137 86.1
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.2e-63 245.4 137 86.1
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.2e-63 245.4 137 86.1
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.2e-63 245.4 218 63.8
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 5.4e-63 245.0 215 61.9
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.1e-63 244.6 214 62.1
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 9.3e-63 244.2 218 60.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 4.6e-62 241.9 138 84.8
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 8.7e-61 237.7 216 63.0
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.5e-60 236.1 210 63.8
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.5e-60 236.1 210 63.8
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.5e-60 236.1 198 64.6
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 9.6e-60 234.2 153 78.4
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.6e-60 234.2 211 64.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 2.4e-58 229.6 210 60.0
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 9.0e-58 227.6 132 84.1
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.8e-57 224.9 122 87.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.9e-55 219.9 135 79.3
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.3e-53 213.0 199 61.3
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 3.0e-53 212.6 140 73.6
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.1e-52 210.7 151 69.5
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 4.3e-52 208.8 142 72.5
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.0e-45 187.6 154 63.0
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.0e-37 159.5 152 58.6
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.3e-35 154.1 162 56.2
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 3.1e-34 149.4 92 77.2
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.8e-29 133.7 157 50.3
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.5e-28 130.6 74 85.1
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.5e-12 77.4 47 74.5
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 2.8e-11 73.2 47 74.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.4e-10 70.9 77 54.5
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 1.4e-10 70.9 47 72.3
Pp3c14_22550 Physcomitrium patens HOM05D004620 ORTHO05D318634 1.2e-06 57.8 101 46.5


User provided reference genes

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