Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 0.0e+00 1260.7 679 100.0
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 6.3e-267 924.1 680 74.6
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 7.7e-241 837.4 653 69.8
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 2.7e-238 828.9 674 68.2
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 5.2e-221 771.5 653 65.7
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.8e-220 768.1 671 64.4
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 9.8e-220 767.3 671 64.2
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 3.7e-219 765.4 680 62.6
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 4.9e-219 765.0 651 65.1
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 4.1e-218 761.9 675 64.6
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 7.0e-218 761.1 672 63.5
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 1.2e-217 760.4 669 63.7
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 2.0e-217 759.6 672 63.7
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 6.0e-217 758.1 651 64.1
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 3.0e-216 755.7 670 62.8
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 1.5e-215 753.4 667 63.3
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 1.2e-214 750.4 650 64.2
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 1.2e-214 750.4 659 63.4
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 2.1e-214 749.6 651 63.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.8e-214 749.2 637 65.9
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 6.2e-214 748.0 670 63.3
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.8e-213 746.5 650 64.5
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 2.3e-213 746.1 669 63.4
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 6.8e-213 744.6 650 64.6
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 2.0e-212 743.0 667 62.7
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 2.0e-212 743.0 650 63.8
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 5.8e-212 741.5 650 64.5
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 1.3e-211 740.3 651 63.3
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 2.9e-211 739.2 667 62.8
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 8.3e-211 737.6 667 62.2
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 8.3e-211 737.6 650 63.4
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 1.9e-210 736.5 650 63.1
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.9e-210 736.5 650 62.9
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.9e-210 736.5 672 63.5
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 5.4e-210 734.9 664 62.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 9.2e-210 734.2 651 63.1
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.1e-209 733.0 650 62.9
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 2.7e-209 732.6 650 62.9
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 3.5e-209 732.3 666 60.1
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 3.5e-209 732.3 635 65.2
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 3.5e-209 732.3 659 62.5
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.0e-208 730.7 650 62.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 1.3e-208 730.3 732 58.6
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 2.3e-208 729.6 732 58.6
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 3.0e-208 729.2 638 64.1
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 3.9e-208 728.8 653 61.9
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 5.1e-208 728.4 648 61.6
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 6.6e-208 728.0 652 62.3
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 8.6e-208 727.6 671 60.7
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 1.1e-207 727.2 650 62.0
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 1.9e-207 726.5 668 61.8
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 2.5e-207 726.1 666 59.9
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 2.5e-207 726.1 651 62.2
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 4.3e-207 725.3 649 62.1
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 5.6e-207 724.9 651 62.4
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 7.3e-207 724.5 651 62.4
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 4.7e-206 721.8 650 62.8
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 6.2e-206 721.5 648 61.0
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 1.4e-205 720.3 662 60.1
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.8e-205 719.9 653 62.2
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 4.0e-205 718.8 651 62.4
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 6.8e-205 718.0 675 60.3
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 3.4e-204 715.7 652 61.3
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 6.4e-203 711.4 668 61.1
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 3.2e-202 709.1 660 60.9
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 3.2e-202 709.1 650 61.2
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 3.2e-202 709.1 674 61.1
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.4e-202 708.4 668 60.8
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 7.1e-202 708.0 655 62.0
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 9.2e-202 707.6 671 59.5
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 2.7e-201 706.1 697 57.1
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 2.7e-201 706.1 671 59.3
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.7e-201 706.1 671 59.9
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 3.5e-201 705.7 697 57.1
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 1.3e-200 703.7 666 58.9
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 1.7e-200 703.4 668 60.8
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 5.1e-200 701.8 670 58.5
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 1.6e-198 696.8 648 59.7
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 3.6e-198 695.7 651 61.1
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 4.7e-198 695.3 649 61.2
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 8.1e-198 694.5 659 60.4
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 1.1e-197 694.1 670 60.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 1.8e-197 693.3 659 59.3
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 2.6e-196 689.5 650 60.5
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.6e-196 689.5 642 62.3
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.4e-196 689.1 648 59.4
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 1.3e-195 687.2 660 59.2
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 1.7e-195 686.8 670 57.9
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.7e-195 686.8 652 60.6
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 2.9e-195 686.0 670 57.9
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.8e-195 685.6 651 60.1
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 8.4e-195 684.5 717 57.2
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 1.4e-194 683.7 651 60.7
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 3.2e-194 682.6 653 59.6
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 5.4e-194 681.8 668 59.1
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.6e-193 680.2 707 56.9
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 2.7e-193 679.5 648 59.1
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 3.5e-193 679.1 635 61.1
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 4.6e-193 678.7 670 59.4
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.0e-192 677.6 670 59.4
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.9e-191 673.3 649 59.6
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 5.6e-191 671.8 671 57.8
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 6.2e-190 668.3 671 57.5
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 6.2e-190 668.3 671 57.5
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 8.1e-190 667.9 666 56.9
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 5.3e-189 665.2 614 63.7
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 9.9e-188 661.0 669 58.0
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 2.9e-187 659.4 669 57.2
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 2.4e-186 656.4 644 58.1
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 3.5e-185 652.5 594 62.1
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.5e-183 646.4 692 55.3
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 8.1e-182 641.3 579 63.2
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.4e-181 639.8 685 55.8
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 5.3e-181 638.6 659 56.8
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.1e-177 626.7 704 54.5
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 1.8e-176 623.6 699 52.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 1.4e-173 614.0 1003 41.9
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 3.9e-160 569.3 537 60.5
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 7.7e-156 555.1 716 49.0
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 4.5e-148 529.3 585 54.2
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 5.0e-131 472.6 417 63.8
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.2e-121 441.4 385 64.2
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 2.1e-105 387.5 345 60.3
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 3.2e-101 373.6 347 59.7
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 2.7e-84 317.4 704 33.8
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 1.7e-78 298.1 363 52.9
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.5e-66 257.7 500 39.0
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 5.6e-66 256.5 258 58.9
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 9.0e-64 249.2 481 39.3
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 3.1e-40 171.0 117 71.8
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 7.2e-37 159.8 141 59.6
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 6.1e-36 156.8 120 67.5
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.5e-34 152.1 185 49.2
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.8e-32 145.2 92 77.2
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 1.3e-30 139.0 199 46.7
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 7.2e-29 133.3 602 26.2
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 2.2e-25 121.7 201 44.3
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 4.8e-25 120.6 679 23.4
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.3e-22 112.5 93 66.7
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 1.2e-15 89.4 707 24.3
Cre04.g223900 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 7.7e-15 86.7 758 19.8
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.6e-12 79.0 109 45.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 3.6e-12 77.8 82 53.7
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 2.4e-08 65.1 82 48.8
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 7.7e-07 60.1 71 49.3
Pp3c16_23710 Physcomitrium patens HOM05D004837 ORTHO05D311744 6.5e-06 57.0 340 25.9


User provided reference genes

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