Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.2e-38 161.8 79 100.0
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.2e-23 112.8 75 77.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 7.3e-18 93.6 71 60.6
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.3e-14 82.8 75 53.3
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 4.9e-14 80.9 75 54.7
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 2.4e-13 78.6 75 52.0
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 2.4e-13 78.6 75 50.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 3.2e-13 78.2 69 52.2
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 3.2e-13 78.2 75 54.7
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 5.4e-13 77.4 71 52.1
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 7.1e-13 77.0 75 53.3
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 9.3e-13 76.6 69 53.6
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 9.3e-13 76.6 69 53.6
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 9.3e-13 76.6 75 56.0
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 1.2e-12 76.3 75 52.0
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 1.6e-12 75.9 69 50.7
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 1.6e-12 75.9 75 53.3
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 2.7e-12 75.1 75 50.7
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 3.5e-12 74.7 69 50.7
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 3.5e-12 74.7 69 49.3
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 3.5e-12 74.7 69 52.2
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 4.6e-12 74.3 69 49.3
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 6.0e-12 73.9 68 51.5
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 6.0e-12 73.9 69 50.7
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 6.0e-12 73.9 69 50.7
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 6.0e-12 73.9 69 47.8
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 6.0e-12 73.9 69 49.3
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 7.9e-12 73.6 69 49.3
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 7.9e-12 73.6 69 50.7
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 7.9e-12 73.6 69 50.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 1.0e-11 73.2 69 49.3
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 1.0e-11 73.2 75 48.0
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 1.0e-11 73.2 68 50.0
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 1.0e-11 73.2 69 50.7
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 52.2
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 52.2
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 1.3e-11 72.8 69 49.3
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 1.8e-11 72.4 69 50.7
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 1.8e-11 72.4 69 50.7
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 1.8e-11 72.4 69 49.3
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.8e-11 72.4 69 52.2
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 1.8e-11 72.4 69 52.2
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.8e-11 72.4 76 47.4
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 1.8e-11 72.4 68 51.5
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 47.8
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 49.3
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 46.4
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 50.7
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 49.3
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 49.3
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 2.3e-11 72.0 69 50.7
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 3.0e-11 71.6 69 50.7
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 3.0e-11 71.6 69 50.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 3.0e-11 71.6 69 50.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 3.0e-11 71.6 69 46.4
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 3.0e-11 71.6 69 49.3
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 3.0e-11 71.6 76 50.0
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 47.8
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 47.8
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 49.3
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 49.3
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 49.3
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 47.8
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 3.9e-11 71.2 69 50.7
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 5.1e-11 70.9 69 47.8
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 5.1e-11 70.9 69 47.8
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 5.1e-11 70.9 69 47.8
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 6.7e-11 70.5 69 49.3
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 6.7e-11 70.5 68 48.5
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.7e-11 70.5 69 47.8
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 6.7e-11 70.5 69 49.3
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 8.7e-11 70.1 69 47.8
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 8.7e-11 70.1 69 47.8
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 8.7e-11 70.1 69 47.8
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 1.1e-10 69.7 69 49.3
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 1.1e-10 69.7 69 49.3
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 1.5e-10 69.3 69 43.5
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 1.5e-10 69.3 69 44.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 1.5e-10 69.3 77 49.4
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 1.5e-10 69.3 77 49.4
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 1.5e-10 69.3 69 46.4
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.5e-10 69.3 42 78.6
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 1.9e-10 68.9 69 42.0
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-10 68.9 69 46.4
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.9e-10 68.9 69 46.4
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 1.9e-10 68.9 69 46.4
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 2.5e-10 68.6 69 44.9
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 2.5e-10 68.6 69 44.9
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 2.5e-10 68.6 68 47.1
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 2.5e-10 68.6 69 49.3
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.3e-10 68.2 69 46.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 3.3e-10 68.2 69 46.4
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 3.3e-10 68.2 68 48.5
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 3.3e-10 68.2 69 43.5
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 4.3e-10 67.8 68 48.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 4.3e-10 67.8 69 50.7
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 4.3e-10 67.8 68 48.5
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 4.3e-10 67.8 69 46.4
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 9.6e-10 66.6 69 47.8
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 1.3e-09 66.2 69 42.0
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 1.3e-09 66.2 69 44.9
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 1.6e-09 65.9 69 44.9
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 2.1e-09 65.5 69 40.6
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 2.1e-09 65.5 69 46.4
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 3.7e-09 64.7 69 42.0
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 4.8e-09 64.3 69 47.8
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 4.8e-09 64.3 68 39.7
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 6.2e-09 63.9 74 44.6
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 6.2e-09 63.9 74 44.6
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 6.2e-09 63.9 68 44.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.4e-08 62.8 69 40.6
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 5.8e-07 57.4 62 41.9


User provided reference genes

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