Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.1e-206 723.0 354 100.0
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 6.8e-140 501.1 371 68.7
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 7.2e-97 358.2 372 51.1
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 2.1e-96 356.7 373 49.1
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 2.1e-96 356.7 372 51.1
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 3.6e-96 355.9 371 50.9
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 3.6e-96 355.9 371 50.9
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 7.9e-96 354.8 373 49.3
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 1.8e-95 353.6 372 49.5
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 3.9e-95 352.4 372 49.5
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 3.9e-95 352.4 372 49.7
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 3.9e-95 352.4 372 50.0
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 6.7e-95 351.7 372 49.5
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 8.8e-95 351.3 368 49.5
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 1.9e-94 350.1 373 48.5
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 2.5e-94 349.7 372 49.2
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 2.5e-94 349.7 372 49.2
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 2.5e-94 349.7 372 49.2
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 2.5e-94 349.7 372 49.5
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 3.3e-94 349.4 372 49.2
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 3.3e-94 349.4 372 49.5
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 7.4e-94 348.2 372 49.7
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 9.7e-94 347.8 372 49.2
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 9.7e-94 347.8 372 48.1
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 1.3e-93 347.4 372 49.5
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 1.3e-93 347.4 372 48.9
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 1.3e-93 347.4 372 49.7
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 1.7e-93 347.1 372 48.9
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 1.7e-93 347.1 372 49.7
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 1.7e-93 347.1 372 49.2
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 1.7e-93 347.1 375 49.1
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 2.2e-93 346.7 372 48.9
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 2.2e-93 346.7 372 49.2
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 2.2e-93 346.7 375 49.1
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 2.8e-93 346.3 372 48.1
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 2.8e-93 346.3 372 48.1
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 3.7e-93 345.9 372 48.7
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 3.7e-93 345.9 372 49.7
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 3.7e-93 345.9 372 50.0
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 3.7e-93 345.9 372 47.8
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 6.3e-93 345.1 372 48.9
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 6.3e-93 345.1 372 49.5
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 6.3e-93 345.1 372 47.3
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 8.2e-93 344.7 372 47.3
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 8.2e-93 344.7 372 48.7
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 8.2e-93 344.7 372 48.9
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 1.1e-92 344.4 372 48.4
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 1.1e-92 344.4 372 48.9
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 1.1e-92 344.4 372 48.4
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 1.4e-92 344.0 372 48.9
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 1.4e-92 344.0 372 49.2
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.4e-92 344.0 372 49.2
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.4e-92 344.0 372 49.2
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.7
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.7
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.7
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.7
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.7
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 49.2
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 1.8e-92 343.6 372 48.4
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 2.4e-92 343.2 372 48.7
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 2.4e-92 343.2 372 48.7
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 2.4e-92 343.2 372 47.8
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 2.4e-92 343.2 372 48.1
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 4.1e-92 342.4 372 48.9
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 5.3e-92 342.0 373 49.1
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 6.9e-92 341.7 372 48.4
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 6.9e-92 341.7 372 48.7
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 6.9e-92 341.7 373 49.1
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 6.9e-92 341.7 372 47.3
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 9.1e-92 341.3 372 48.7
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 1.2e-91 340.9 385 48.6
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 1.2e-91 340.9 372 48.7
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 1.2e-91 340.9 372 48.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-91 340.5 372 48.7
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 1.5e-91 340.5 372 47.8
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 2.0e-91 340.1 372 47.8
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 2.6e-91 339.7 372 47.8
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 3.4e-91 339.3 372 47.6
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 3.4e-91 339.3 372 47.6
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 5.9e-91 338.6 377 48.5
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 1.0e-90 337.8 372 47.8
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 1.3e-90 337.4 372 47.6
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.7e-90 337.0 372 47.3
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 1.7e-90 337.0 372 47.3
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-90 337.0 373 46.9
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 6.5e-90 335.1 372 47.3
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 8.5e-90 334.7 372 48.4
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 7.2e-89 331.6 372 46.8
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 1.2e-88 330.9 372 46.8
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 1.6e-88 330.5 372 47.3
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 2.1e-88 330.1 372 46.5
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 2.7e-88 329.7 372 47.8
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 1.0e-87 327.8 372 47.0
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.5e-86 323.9 380 45.5
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 1.5e-86 323.9 435 42.1
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 2.0e-86 323.6 371 45.3
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 4.4e-86 322.4 372 45.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 8.2e-85 318.2 372 47.8
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 1.8e-84 317.0 398 43.7
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 4.1e-84 315.8 369 46.1
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 1.2e-83 314.3 372 45.7
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 9.4e-81 304.7 324 50.0
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 2.7e-80 303.1 372 42.5
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 7.2e-73 278.5 280 51.8
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 2.1e-72 276.9 308 46.4
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 2.7e-72 276.6 356 42.7
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 6.1e-72 275.4 295 47.5
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 1.1e-60 238.0 324 42.3
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 3.8e-58 229.6 203 55.7
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 4.7e-48 196.1 228 43.9
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 5.4e-44 182.6 174 51.7
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 1.5e-41 174.5 205 45.4
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 1.2e-38 164.9 150 57.3
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 2.1e-35 154.1 239 40.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 3.9e-34 149.8 147 49.0
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 3.3e-33 146.7 139 58.3
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.2e-32 142.5 185 43.2
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 1.7e-26 124.4 186 40.9
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 3.0e-26 123.6 134 46.3
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 1.6e-24 117.9 167 38.9
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 8.1e-24 115.5 164 40.2
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.0e-22 110.9 134 41.8
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 2.0e-22 110.9 81 55.6
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 6.4e-21 105.9 134 43.3
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 8.1e-16 89.0 65 53.8
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 1.8e-15 87.8 82 59.8
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-12 78.6 78 56.4
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 9.3e-12 75.5 84 51.2
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 3.5e-11 73.6 91 46.2
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.7e-10 71.2 42 78.6
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-09 68.6 78 47.4
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 2.4e-07 60.8 46 54.3
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.6e-06 57.4 65 40.0


User provided reference genes

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