Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 1.6e-311 1072.0 573 100.0
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 5.2e-113 412.5 470 49.6
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 7.5e-112 408.7 532 46.1
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 6.8e-97 359.0 544 42.1
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 3.2e-94 350.1 527 41.6
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 7.0e-94 349.0 522 42.7
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 3.5e-93 346.7 521 41.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.6e-93 346.3 537 40.6
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 7.8e-93 345.5 523 41.7
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 1.1e-91 341.7 524 39.9
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 1.5e-91 341.3 524 39.9
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 1.9e-91 340.9 518 42.1
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 1.9e-91 340.9 520 40.6
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 4.3e-91 339.7 524 41.0
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.6e-90 337.8 518 41.1
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 2.1e-90 337.4 518 40.3
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 2.8e-90 337.0 529 42.2
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 3.6e-90 336.7 522 41.6
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 4.7e-90 336.3 520 41.0
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 4.7e-90 336.3 518 40.3
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 1.4e-89 334.7 526 39.7
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.4e-89 334.7 517 39.8
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 1.8e-89 334.3 547 39.5
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.3e-89 334.0 517 40.0
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 2.3e-89 334.0 528 40.3
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 1.2e-88 331.6 472 43.0
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 2.0e-88 330.9 520 39.6
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 2.6e-88 330.5 518 39.6
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 4.4e-88 329.7 529 40.3
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 5.8e-88 329.3 461 44.0
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 7.5e-88 328.9 521 41.1
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 7.5e-88 328.9 521 39.9
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 9.8e-88 328.6 540 40.4
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 9.8e-88 328.6 528 40.3
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 4.9e-87 326.2 524 39.9
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 4.9e-87 326.2 528 40.2
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 4.9e-87 326.2 475 41.7
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 8.3e-87 325.5 548 39.4
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 8.3e-87 325.5 524 40.3
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 8.3e-87 325.5 529 39.7
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 1.1e-86 325.1 528 39.6
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 1.9e-86 324.3 535 39.8
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 2.4e-86 323.9 477 41.9
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 3.2e-86 323.6 521 40.5
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 4.1e-86 323.2 519 40.1
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 5.4e-86 322.8 519 40.7
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 5.4e-86 322.8 538 38.3
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 7.0e-86 322.4 525 39.2
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 9.2e-86 322.0 523 38.8
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 9.2e-86 322.0 522 39.3
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.1e-85 320.9 454 42.5
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 2.7e-85 320.5 517 40.2
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 2.7e-85 320.5 535 39.6
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 3.5e-85 320.1 520 41.3
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 6.0e-85 319.3 471 43.1
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 7.8e-85 318.9 523 38.6
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 7.8e-85 318.9 468 42.1
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 1.0e-84 318.5 530 38.1
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 1.7e-84 317.8 529 41.2
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 2.3e-84 317.4 541 38.6
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 3.9e-84 316.6 525 38.9
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 3.9e-84 316.6 521 39.3
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 5.1e-84 316.2 458 42.8
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 5.1e-84 316.2 519 40.7
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 6.6e-84 315.8 529 39.9
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.9e-83 314.3 514 40.7
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 2.5e-83 313.9 463 42.3
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 3.3e-83 313.5 460 42.2
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 3.3e-83 313.5 533 38.8
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 4.3e-83 313.2 531 39.5
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 5.6e-83 312.8 517 40.6
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 9.5e-83 312.0 516 39.5
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 1.6e-82 311.2 462 41.8
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 3.6e-82 310.1 525 39.0
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 6.2e-82 309.3 522 38.5
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 6.2e-82 309.3 523 39.0
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 1.1e-81 308.5 523 39.8
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 2.3e-81 307.4 533 38.3
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 4.0e-81 306.6 471 41.8
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 5.2e-81 306.2 453 41.9
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 5.2e-81 306.2 453 41.9
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 5.2e-81 306.2 522 38.9
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 8.9e-81 305.4 468 40.8
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 1.5e-80 304.7 535 37.4
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 4.4e-80 303.1 505 40.2
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 2.2e-79 300.8 524 38.4
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 2.9e-79 300.4 541 38.8
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 3.2e-78 297.0 525 39.2
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 3.2e-78 297.0 442 42.1
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 3.2e-78 297.0 521 40.1
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 1.6e-77 294.7 531 37.7
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 2.1e-77 294.3 536 37.5
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 1.0e-76 292.0 433 42.5
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 9.5e-75 285.4 532 36.7
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 2.8e-74 283.9 486 39.1
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 2.4e-73 280.8 532 37.4
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 5.2e-73 279.6 511 37.8
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 2.4e-70 270.8 434 39.6
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 1.2e-64 251.9 499 34.7
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.1e-62 245.4 420 39.3
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 2.1e-61 241.1 293 46.4
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 1.3e-60 238.4 447 35.1
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.4e-57 228.4 440 37.0
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 3.4e-56 223.8 512 32.8
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 9.0e-49 199.1 349 36.4
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 6.7e-44 183.0 308 38.0
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.9e-43 181.4 238 45.0
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 8.4e-39 166.0 230 42.6
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.3e-36 157.9 235 42.1
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 1.5e-35 155.2 236 39.0
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 3.3e-35 154.1 576 27.6
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 3.8e-07 60.8 161 34.2


User provided reference genes

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