Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 2.4e-192 675.2 320 100.0
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 2.3e-126 456.1 306 68.3
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 7.3e-125 451.1 305 67.2
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 9.6e-125 450.7 306 68.0
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 2.1e-124 449.5 306 67.0
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 4.8e-124 448.4 308 65.9
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 4.8e-124 448.4 306 67.6
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 6.2e-124 448.0 306 69.0
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 5.3e-123 444.9 302 66.9
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 9.0e-123 444.1 305 66.6
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 1.2e-122 443.7 306 66.3
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 1.5e-122 443.4 306 66.0
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 2.6e-122 442.6 310 65.8
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 7.6e-122 441.0 306 66.0
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 7.6e-122 441.0 306 67.6
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 9.9e-122 440.7 303 67.3
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 9.9e-122 440.7 305 65.6
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 1.3e-121 440.3 320 64.4
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 1.7e-121 439.9 306 64.4
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 2.2e-121 439.5 302 65.6
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 2.2e-121 439.5 306 65.4
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 2.2e-121 439.5 306 66.0
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 2.2e-121 439.5 306 66.0
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 2.2e-121 439.5 302 67.2
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 2.9e-121 439.1 306 66.3
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 3.8e-121 438.7 305 65.9
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 4.9e-121 438.3 306 65.7
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 4.9e-121 438.3 306 65.4
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 4.9e-121 438.3 303 66.7
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 8.4e-121 437.6 306 64.1
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 8.4e-121 437.6 306 65.4
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 1.1e-120 437.2 302 65.2
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 1.1e-120 437.2 306 65.0
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 1.4e-120 436.8 308 65.3
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 3.2e-120 435.6 306 63.7
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 3.2e-120 435.6 302 65.2
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 3.2e-120 435.6 302 65.6
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 4.2e-120 435.3 303 66.3
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 5.4e-120 434.9 304 64.8
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 7.1e-120 434.5 310 65.2
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 9.3e-120 434.1 308 66.6
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 1.6e-119 433.3 306 65.7
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 2.1e-119 433.0 306 66.0
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 2.7e-119 432.6 306 64.4
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 3.5e-119 432.2 306 64.1
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 7.9e-119 431.0 306 64.7
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 1.3e-118 430.3 306 67.0
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 1.8e-118 429.9 306 63.4
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 2.3e-118 429.5 306 64.7
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 3.0e-118 429.1 308 65.6
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 3.0e-118 429.1 307 64.5
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 3.9e-118 428.7 307 65.1
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 5.1e-118 428.3 306 63.7
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 1.1e-117 427.2 305 63.6
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 1.9e-117 426.4 305 62.6
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 2.5e-117 426.0 303 64.7
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 3.3e-117 425.6 306 63.7
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 5.6e-117 424.9 308 64.6
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 5.6e-117 424.9 305 64.6
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 9.6e-117 424.1 304 65.8
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 9.6e-117 424.1 308 64.3
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 1.3e-116 423.7 306 63.1
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 1.3e-116 423.7 308 64.6
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 3.6e-116 422.2 311 62.7
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 1.8e-115 419.9 305 64.9
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 3.1e-115 419.1 308 63.3
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 3.1e-115 419.1 309 63.8
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 4.0e-115 418.7 324 62.0
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 4.0e-115 418.7 324 62.0
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 5.3e-115 418.3 321 62.6
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 6.9e-115 417.9 306 63.7
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 1.5e-114 416.8 315 61.6
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 1.5e-114 416.8 315 61.9
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 2.6e-114 416.0 307 61.9
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 1.3e-113 413.7 307 61.2
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 1.3e-113 413.7 307 61.6
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 2.2e-113 412.9 292 64.7
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 2.9e-113 412.5 308 62.0
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 3.8e-113 412.1 308 62.0
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 3.2e-112 409.1 307 60.9
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 2.7e-111 406.0 310 60.6
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 3.9e-110 402.1 306 61.8
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 8.7e-110 401.0 296 63.5
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 1.9e-109 399.8 306 62.1
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 2.5e-109 399.4 286 62.9
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 2.5e-109 399.4 306 60.1
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 4.3e-109 398.7 288 63.5
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 5.6e-109 398.3 304 60.5
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 3.7e-108 395.6 319 58.0
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 8.1e-108 394.4 303 60.1
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 7.1e-104 381.3 306 60.5
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 6.0e-103 378.3 306 61.1
QL09p034368 Quercus lobata HOM05D006264 ORTHO05D007739 6.3e-100 368.2 253 65.2
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 3.4e-98 362.5 290 58.3
THA.LOC104801868 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.3e-97 360.5 255 64.7
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 1.3e-97 360.5 316 56.3
Thhalv10008543m.g Eutrema salsugineum HOM05D006264 ORTHO05D007739 2.2e-97 359.8 256 65.6
AL1G34960 Arabidopsis lyrata HOM05D006264 ORTHO05D007739 2.5e-96 356.3 254 65.0
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 1.1e-93 347.4 306 53.9
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 3.1e-91 339.3 312 54.2
DCAR_028205 Daucus carota HOM05D006264 ORTHO05D007739 9.1e-91 337.8 254 61.4
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 7.7e-90 334.7 306 55.9
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 4.2e-88 328.9 253 59.7
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 1.8e-78 297.0 217 62.2
Atru.chr13.1491 Acer truncatum HOM05D006264 ORTHO05D007739 2.2e-76 290.0 218 62.8
Sopen11g007570 Solanum pennellii HOM05D006264 ORTHO05D007739 4.8e-76 288.9 198 66.7
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 2.7e-58 229.9 145 68.3
MCO07G330 Micromonas commoda HOM05D006264 ORTHO05D007739 2.7e-50 203.4 315 39.7
PRCOL_00004228 Prasinoderma coloniale HOM05D006264 ORTHO05D007739 5.0e-49 199.1 311 40.2
Cpa.g.c35582 Carica papaya HOM05D006264 ORTHO05D007739 3.6e-47 193.0 144 63.2
Psat5g086240 Pisum sativum HOM05D006264 ORTHO05D007739 9.8e-45 184.9 132 65.2
Cre06.g254450 Chlamydomonas reinhardtii HOM05D006264 ORTHO05D007739 4.9e-44 182.6 307 35.8
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 1.5e-37 161.0 123 57.7
SEGI_39749 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 7.3e-32 142.1 111 66.7
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 8.3e-28 128.6 87 65.5
Cpa.g.c45459 Carica papaya HOM05D006264 ORTHO05D007739 5.1e-25 119.4 78 67.9
Zm00001eb082740 Zea mays HOM05D006264 ORTHO05D007739 2.5e-24 117.1 133 46.6
SEGI_38549 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 5.8e-21 105.9 68 64.7
arahy.Tifrunner.gnm1.ann1.XAL0CN Arachis hypogaea HOM05D003584 ORTHO05D004148 1.9e-19 100.9 104 46.2
Migut.B01582 Erythranthe guttata HOM05D006264 ORTHO05D007739 1.9e-19 100.9 58 77.6
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 9.6e-16 88.6 62 62.9
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 7.1e-11 72.4 54 61.1
Rhsim11G0069000 Rhododendron simsii HOM05D006264 ORTHO05D007739 3.9e-09 66.6 60 50.0
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 1.1e-06 58.5 49 59.2


User provided reference genes

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