Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 0.0e+00 2254.9 1169 100.0
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 5.0e-248 862.1 1129 46.5
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 1.2e-209 734.6 1093 42.1
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 2.5e-194 683.7 1156 39.1
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 2.5e-183 647.1 1234 35.0
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 3.1e-181 640.2 1110 37.4
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 4.1e-181 639.8 1107 38.1
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 1.5e-180 637.9 1153 36.9
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 7.7e-180 635.6 1131 37.0
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.9e-178 630.9 1145 37.7
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 2.7e-177 627.1 1144 37.5
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 7.9e-177 625.5 1125 37.7
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 8.2e-174 615.5 1092 36.9
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.1e-173 615.1 1171 35.3
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 1.8e-173 614.4 1155 35.6
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 4.1e-173 613.2 1152 36.4
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.3e-173 612.8 1126 36.6
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 7.0e-173 612.5 1126 36.1
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 9.1e-173 612.1 1125 35.6
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 9.1e-173 612.1 1123 36.1
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 5.0e-171 606.3 1142 36.5
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 1.9e-170 604.4 1144 35.8
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.0e-168 598.6 1123 36.1
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 5.2e-168 596.3 1146 35.3
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 6.7e-168 595.9 1130 35.3
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 8.8e-168 595.5 1159 34.6
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.4e-165 588.2 1151 34.7
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 1.8e-165 587.8 1150 35.2
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 5.3e-165 586.3 1144 35.1
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 5.3e-165 586.3 1144 35.1
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.6e-164 584.7 1053 37.9
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 2.6e-164 583.9 994 38.3
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 3.5e-164 583.6 994 38.3
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.3e-163 581.6 1104 36.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.7e-163 581.3 1096 36.2
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 3.8e-163 580.1 1150 35.2
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 7.2e-162 575.9 1131 34.9
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.1e-161 574.3 1126 34.8
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 4.7e-161 573.2 998 38.0
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 4.7e-161 573.2 1099 34.8
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 8.0e-161 572.4 1157 35.2
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 3.4e-159 567.0 1146 35.0
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 9.8e-159 565.5 1156 34.6
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 6.3e-158 562.8 1127 34.7
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 3.1e-157 560.5 1155 35.1
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 4.1e-157 560.1 1132 34.7
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 4.1e-157 560.1 1108 33.9
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.2e-156 558.5 1127 33.7
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 2.0e-156 557.8 1117 33.8
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 5.9e-156 556.2 1143 34.2
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 1.7e-155 554.7 1125 33.3
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 1.7e-155 554.7 1125 33.3
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 2.2e-155 554.3 1138 34.7
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.2e-155 554.3 1130 33.6
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 2.9e-155 553.9 1091 34.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.9e-155 553.9 1144 33.2
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.2e-153 548.5 970 37.8
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 8.0e-153 545.8 1139 34.7
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 2.3e-152 544.3 1126 33.6
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 5.2e-152 543.1 997 37.3
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 2.0e-151 541.2 1131 33.1
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.0e-151 541.2 921 36.8
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.0e-151 541.2 1115 34.6
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 5.7e-151 539.7 1135 33.0
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 7.5e-151 539.3 1130 33.2
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.3e-150 538.5 1137 33.3
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.7e-150 538.1 817 40.3
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 1.7e-150 538.1 1075 34.3
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 9.5e-146 522.3 1145 34.2
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 6.1e-145 519.6 1231 32.5
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 8.3e-142 509.2 1269 31.7
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 9.2e-141 505.8 1138 33.0
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.1e-138 498.8 1000 35.7
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 7.3e-138 496.1 948 35.3
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.3e-134 485.3 1131 32.5
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 5.0e-131 473.4 1150 32.3
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 5.2e-128 463.4 742 38.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 5.1e-123 446.8 833 36.3
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 3.1e-120 437.6 907 35.1
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 7.8e-116 422.9 1120 28.9
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 3.1e-112 411.0 804 35.9
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.4e-109 402.1 1217 28.7
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 2.4e-109 401.4 822 35.0
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 2.5e-98 364.8 858 31.5
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 2.1e-97 361.7 597 37.5
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 1.3e-89 335.9 1123 29.5
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.8e-87 327.0 979 29.3
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.8e-87 327.0 757 32.6
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.3e-86 325.9 495 39.4
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 2.5e-85 321.6 503 38.2
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 9.3e-85 319.7 525 37.5
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.7e-84 318.2 623 36.0
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-78 298.9 392 46.4
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.3e-75 288.5 441 39.7
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 2.3e-75 288.5 604 35.9
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 3.0e-75 288.1 545 34.5
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.1e-58 233.0 578 30.1
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 2.0e-55 222.2 592 31.4
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.2e-52 213.0 267 47.9
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 8.0e-52 210.3 531 30.7
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 7.5e-50 203.8 482 33.0
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 2.5e-45 188.7 1162 23.4
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 5.0e-38 164.5 254 39.4
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.1e-32 144.8 161 47.8
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 3.3e-29 135.2 327 30.3
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.2e-26 126.7 240 36.7
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 4.6e-23 114.8 447 27.7
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 4.3e-21 108.2 125 48.8
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 1.2e-20 106.7 110 50.0
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 1.6e-20 106.3 108 54.6
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.4e-19 103.2 121 46.3
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 2.9e-17 95.5 409 25.7
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.9e-17 94.7 236 30.5
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.4e-16 92.4 139 41.0
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 4.1e-16 91.7 112 48.2
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 1.6e-12 79.7 59 64.4
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 3.6e-12 78.6 75 60.0
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.1e-12 77.4 104 41.3
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.4e-11 76.6 168 28.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 9.8e-10 70.5 98 38.8
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 2.9e-09 68.9 71 46.5
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.2e-08 65.5 68 47.1
MBI04_g04803_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.1e-08 64.3 68 57.4
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.0e-07 61.2 211 28.0
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.0e-06 60.5 65 50.8
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.9e-06 58.5 220 27.3


User provided reference genes

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