Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 0.0e+00 2214.1 1114 100.0
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 0.0e+00 1689.9 1133 74.8
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 0.0e+00 1162.1 1132 54.1
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 3.5e-291 1005.4 1167 48.8
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 4.6e-291 1005.0 1142 47.5
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 1.7e-290 1003.0 1123 48.2
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 5.1e-290 1001.5 1132 48.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 2.5e-289 999.2 1120 47.4
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 7.3e-289 997.7 1134 48.0
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 9.6e-289 997.3 1131 47.8
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 9.6e-289 997.3 1130 47.8
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 2.0e-286 989.6 1124 47.9
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 3.4e-286 988.8 1132 47.3
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 5.4e-284 981.5 1143 46.7
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 1.2e-283 980.3 1164 47.0
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 1.7e-282 976.5 1138 45.7
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-282 975.7 1136 46.4
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 3.9e-282 975.3 1204 46.3
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 3.9e-282 975.3 1146 46.9
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 9.6e-281 970.7 1146 47.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 2.1e-280 969.5 1087 47.7
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 4.8e-280 968.4 1121 46.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 4.0e-279 965.3 1186 44.8
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 4.0e-279 965.3 1117 45.9
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 1.2e-278 963.8 1134 47.0
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 2.0e-278 963.0 1131 46.2
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.6e-278 962.6 1129 47.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 4.5e-278 961.8 1114 46.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 7.6e-278 961.1 1117 46.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 7.6e-278 961.1 1131 46.6
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 9.9e-278 960.7 1128 47.4
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 9.9e-278 960.7 1125 47.2
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 9.9e-278 960.7 1115 45.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 1.3e-277 960.3 1131 46.6
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 4.9e-277 958.4 1131 45.9
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 2.4e-276 956.1 1190 44.9
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.2e-275 953.7 1005 51.4
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 6.0e-275 951.4 1140 46.2
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 7.9e-275 951.0 1141 46.2
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 2.3e-274 949.5 1131 45.3
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 5.1e-274 948.3 1118 47.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 7.4e-273 944.5 1121 46.7
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 9.6e-273 944.1 1122 45.5
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 1.3e-272 943.7 1130 45.6
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 1.4e-271 940.3 1127 46.5
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 3.1e-271 939.1 1120 46.0
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 5.3e-271 938.3 1113 46.1
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 9.0e-271 937.6 1133 44.6
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 2.6e-270 936.0 1133 44.6
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 2.6e-270 936.0 1131 46.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 9.9e-270 934.1 1114 46.1
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 2.9e-269 932.6 1188 44.4
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 4.9e-269 931.8 1137 46.4
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 8.4e-269 931.0 1103 46.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 1.1e-268 930.6 1122 46.3
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 1.1e-268 930.6 1100 46.6
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 1.1e-268 930.6 1096 46.9
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 1.9e-268 929.9 1071 47.5
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 5.5e-268 928.3 1117 45.3
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 9.3e-268 927.5 1100 46.8
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 2.1e-267 926.4 1133 44.9
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 3.5e-267 925.6 1120 45.0
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 3.5e-267 925.6 1121 45.5
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 3.5e-267 925.6 1128 46.1
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 4.6e-267 925.2 1114 46.1
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 4.6e-267 925.2 1114 46.1
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 6.0e-267 924.9 1090 46.1
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 1.3e-266 923.7 1105 46.5
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 3.9e-266 922.2 1103 46.8
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 1.1e-265 920.6 1100 46.5
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.1e-265 920.6 940 51.1
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 5.6e-265 918.3 1126 45.0
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.3e-264 917.1 1102 46.3
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 1.3e-264 917.1 1109 45.9
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 8.2e-264 914.4 1102 46.2
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 8.2e-264 914.4 1133 44.4
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 2.4e-263 912.9 1089 45.9
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 3.1e-263 912.5 1089 45.9
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 9.0e-263 911.0 1101 45.9
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 2.6e-262 909.4 1090 45.9
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 5.8e-262 908.3 1128 44.3
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 7.6e-262 907.9 1128 44.2
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 1.3e-261 907.1 1121 45.2
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 1.7e-261 906.7 1146 44.6
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.4e-260 903.7 1137 43.9
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 4.2e-260 902.1 1128 44.1
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.6e-259 900.2 1106 45.3
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 2.1e-259 899.8 1089 45.4
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.0e-258 897.5 1128 44.1
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.3e-258 897.1 1112 44.6
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 1.3e-258 897.1 1141 43.6
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 1.3e-256 890.6 1177 42.4
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 4.8e-256 888.6 1117 45.4
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 8.2e-256 887.9 1094 45.3
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 1.4e-255 887.1 1098 44.4
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 6.9e-255 884.8 931 50.7
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 2.6e-254 882.9 1137 44.4
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.1e-249 867.5 1020 45.9
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 1.1e-249 867.5 1016 46.9
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 9.7e-249 864.4 1149 44.0
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 3.9e-242 842.4 1192 41.4
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 2.6e-241 839.7 1171 42.6
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 2.0e-238 830.1 1137 42.0
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 4.5e-238 828.9 850 49.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 7.7e-238 828.2 1000 46.2
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.9e-236 823.5 800 52.8
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 3.2e-236 822.8 1096 43.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 1.6e-235 820.5 969 45.9
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 4.4e-233 812.4 971 45.8
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 8.2e-232 808.1 968 45.8
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 5.0e-221 772.3 795 49.6
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.8e-218 763.8 960 44.5
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 6.3e-216 755.4 1018 43.0
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.7e-208 730.7 914 44.3
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.6e-198 697.6 652 54.0
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 3.9e-173 613.2 808 42.5
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 8.4e-168 595.5 826 41.2
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 5.0e-120 436.8 466 48.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 9.4e-119 432.6 638 40.0
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 4.0e-109 400.6 1271 27.7
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.5e-108 398.7 391 52.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 3.0e-101 374.4 536 41.8
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.0e-100 371.7 332 54.8
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 9.8e-100 369.4 659 36.1
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 8.6e-80 303.1 302 52.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.8e-69 268.9 367 45.8
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.9e-58 232.3 507 34.5
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.0e-53 214.5 231 49.8
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.2e-49 203.0 358 36.0
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 2.1e-41 175.6 358 33.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.7e-38 164.9 253 37.5
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.9e-35 154.5 234 38.0
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 4.3e-31 141.4 368 31.5
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.1e-30 139.0 204 41.7
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.7e-30 138.3 223 36.3
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.8e-30 137.9 223 36.3
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.8e-30 137.9 223 36.3
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.8e-30 137.9 223 36.3
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 6.3e-30 137.5 207 38.2
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.1e-29 134.8 223 35.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 6.5e-27 127.5 146 46.6
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 4.2e-26 124.8 235 35.7
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 8.7e-24 117.1 239 32.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.5e-23 115.5 223 32.3
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 4.3e-23 114.8 103 55.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.1e-21 108.6 407 25.6
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 5.3e-21 107.8 166 39.2
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 2.5e-15 89.0 275 28.4
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 4.3e-15 88.2 275 28.0
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 8.2e-14 84.0 276 27.2
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-12 80.1 241 26.6
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 6.5e-11 74.3 52 63.5
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.5e-10 71.2 74 44.6
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.8e-08 66.2 58 48.3
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 2.6e-07 62.4 134 31.3


User provided reference genes

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