Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_36800 Physcomitrium patens HOM05D000361 ORTHO05D004243 0.0e+00 1460.3 754 100.0
Pp3c12_23510 Physcomitrium patens HOM05D000361 ORTHO05D004243 3.6e-311 1071.2 786 71.4
Mapoly0167s0022 Marchantia polymorpha HOM05D000361 ORTHO05D004243 3.5e-194 682.6 798 48.1
SMO116G0335 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 1.3e-180 637.5 765 47.2
SMO195G0031 Selaginella moellendorffii HOM05D000361 ORTHO05D004243 3.8e-180 636.0 761 47.2
Eucgr.H00929 Eucalyptus grandis HOM05D000361 ORTHO05D004243 1.3e-151 541.2 772 40.7
Duzib133G0716 Durio zibethinus HOM05D000361 ORTHO05D004243 6.3e-151 538.9 744 42.2
PSO017G2448 Papaver somniferum HOM05D000361 ORTHO05D004243 8.2e-151 538.5 765 40.8
ATR0796G177 Amborella trichopoda HOM05D000361 ORTHO05D004243 1.8e-150 537.3 771 40.2
Ciclev10018936m.g Citrus clementina HOM05D000361 ORTHO05D004243 2.4e-150 537.0 781 41.1
Sopen06g004290 Solanum pennellii HOM05D000361 ORTHO05D004243 2.4e-150 537.0 781 40.8
Thecc.01G313200 Theobroma cacao HOM05D000361 ORTHO05D004243 2.4e-150 537.0 772 40.7
Nitab4.5_0006144g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.1e-150 536.2 771 41.1
PGR119G2139 Punica granatum HOM05D000361 ORTHO05D004243 1.2e-149 534.6 764 41.1
Solyc06g009650.3 Solanum lycopersicum HOM05D000361 ORTHO05D004243 1.2e-149 534.6 781 40.8
PSO063G6259 Papaver somniferum HOM05D000361 ORTHO05D004243 2.6e-149 533.5 764 40.3
AUR62011807 Chenopodium quinoa HOM05D000361 ORTHO05D004243 1.7e-148 530.8 785 40.6
Gohir.D12G128800 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.2e-148 530.4 777 40.5
Gorai.008G139800 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.2e-148 530.4 777 40.4
CAN.G1280.26 Capsicum annuum HOM05D000361 ORTHO05D004243 2.9e-148 530.0 781 41.0
MELO3C023707.2 Cucumis melo HOM05D000361 ORTHO05D004243 6.5e-148 528.9 783 39.8
AUR62024653 Chenopodium quinoa HOM05D000361 ORTHO05D004243 8.5e-148 528.5 784 40.3
COL.COLO4_23233 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.5e-147 527.7 756 41.3
CsaV3_7G025080 Cucumis sativus L. HOM05D000361 ORTHO05D004243 1.5e-147 527.7 783 40.2
MSTRG.21685 Avicennia marina HOM05D000361 ORTHO05D004243 1.9e-147 527.3 783 40.1
Duzib138G1700 Durio zibethinus HOM05D000361 ORTHO05D004243 2.5e-147 526.9 779 40.3
Sed0012026 Sechium edule HOM05D000361 ORTHO05D004243 2.5e-147 526.9 776 40.3
TWI36G0074 Tripterygium wilfordii HOM05D000361 ORTHO05D004243 2.5e-147 526.9 769 40.7
Gohir.A12G125100 Gossypium hirsutum HOM05D000361 ORTHO05D004243 7.2e-147 525.4 777 39.6
GSVIVG01028119001 Vitis vinifera HOM05D000361 ORTHO05D004243 9.4e-147 525.0 772 40.0
Nitab4.5_0000363g0270 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.2e-146 524.6 798 39.8
QL12p019966 Quercus lobata HOM05D000361 ORTHO05D004243 1.2e-146 524.6 783 40.4
CiPaw.07G117400 Carya illinoinensis HOM05D000361 ORTHO05D004243 1.6e-146 524.2 783 40.1
Aqoxy3G02976 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 6.1e-146 522.3 780 39.9
CANSAT25G2078 Cannabis sativa HOM05D000361 ORTHO05D004243 6.1e-146 522.3 769 40.2
Actinidia20995 Actinidia chinensis HOM05D000361 ORTHO05D004243 8.0e-146 521.9 785 39.9
Sopen01g031260 Solanum pennellii HOM05D000361 ORTHO05D004243 1.0e-145 521.5 771 40.2
Actinidia25847 Actinidia chinensis HOM05D000361 ORTHO05D004243 1.4e-145 521.2 786 40.1
Hma1.2p1_0486F.1_g163260 Hydrangea macrophylla HOM05D000361 ORTHO05D004243 1.4e-145 521.2 780 40.3
Sp6g01910 Schrenkiella parvula HOM05D000361 ORTHO05D004243 1.4e-145 521.2 772 39.2
Cc01_g21390 Coffea canephora HOM05D000361 ORTHO05D004243 3.0e-145 520.0 779 39.9
Solyc01g079490.2 Solanum lycopersicum HOM05D000361 ORTHO05D004243 4.0e-145 519.6 772 40.5
Prupe.5G007800 Prunus persica HOM05D000361 ORTHO05D004243 6.8e-145 518.8 777 40.0
MD03G1295300 Malus domestica HOM05D000361 ORTHO05D004243 8.8e-145 518.5 780 39.7
Haze_05039 Corylus avellana HOM05D000361 ORTHO05D004243 2.0e-144 517.3 775 39.9
Carub.0006s3520 Capsella rubella HOM05D000361 ORTHO05D004243 4.4e-144 516.2 773 38.8
Nn4g25601 Nelumbo nucifera HOM05D000361 ORTHO05D004243 5.7e-144 515.8 768 39.2
Ciclev10010795m.g Citrus clementina HOM05D000361 ORTHO05D004243 9.7e-144 515.0 776 40.2
AagrBONN_evm.TU.Sc2ySwM_228.3730 Anthoceros agrestis HOM05D000361 ORTHO05D004243 1.3e-143 514.6 624 45.5
Migut.N00925 Erythranthe guttata HOM05D000361 ORTHO05D004243 1.7e-143 514.2 783 38.4
AL6G51220 Arabidopsis lyrata HOM05D000361 ORTHO05D004243 2.8e-143 513.5 771 38.5
CARHR249640 Cardamine hirsuta HOM05D000361 ORTHO05D004243 3.7e-143 513.1 773 38.2
Thhalv10028443m.g Eutrema salsugineum HOM05D000361 ORTHO05D004243 3.7e-143 513.1 772 38.5
Manes.01G227700 Manihot esculenta HOM05D000361 ORTHO05D004243 3.7e-143 513.1 773 39.3
Peaxi162Scf00058g02630 Petunia axillaris HOM05D000361 ORTHO05D004243 1.1e-142 511.5 805 38.8
Potri.002G196300 Populus trichocarpa HOM05D000361 ORTHO05D004243 1.8e-142 510.8 781 39.9
Rhsim01G0290600 Rhododendron simsii HOM05D000361 ORTHO05D004243 1.8e-142 510.8 785 39.2
THA.LOC104799236 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 1.8e-142 510.8 775 38.8
AT4G02030 Arabidopsis thaliana HOM05D000361 ORTHO05D004243 3.1e-142 510.0 771 38.7
Aqoxy3G01218 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 7.0e-142 508.8 778 38.8
CSS0010179 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 2.0e-141 507.3 775 38.8
vmacro15111 Vaccinium macrocarpon HOM05D000361 ORTHO05D004243 2.0e-141 507.3 792 39.5
CDE11G0331 Ceratophyllum demersum HOM05D000361 ORTHO05D004243 5.9e-141 505.8 774 39.4
BcaC04g24028 Brassica carinata HOM05D000361 ORTHO05D004243 1.0e-140 505.0 772 38.3
BcaB01g02087 Brassica carinata HOM05D000361 ORTHO05D004243 1.3e-140 504.6 772 38.5
A09p01480 Brassica napus HOM05D000361 ORTHO05D004243 1.9e-139 500.7 773 38.3
Glyma.02G012800 Glycine max HOM05D000361 ORTHO05D004243 1.9e-139 500.7 767 40.0
FvH4_5g39210 Fragaria vesca HOM05D000361 ORTHO05D004243 3.2e-139 500.0 777 38.9
Medtr1g087100 Medicago truncatula HOM05D000361 ORTHO05D004243 4.2e-139 499.6 769 39.9
CSS0030911 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.2e-138 498.0 779 38.6
C09p01600 Brassica napus HOM05D000361 ORTHO05D004243 1.6e-138 497.7 773 38.2
Ca_10285_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 1.6e-138 497.7 772 39.4
TPR.G19758 Trifolium pratense HOM05D000361 ORTHO05D004243 2.1e-138 497.3 768 39.7
Psat6g161800 Pisum sativum HOM05D000361 ORTHO05D004243 2.7e-138 496.9 770 39.2
Glyma.10G013400 Glycine max HOM05D000361 ORTHO05D004243 3.6e-138 496.5 763 40.0
Peaxi162Scf00691g00222 Petunia axillaris HOM05D000361 ORTHO05D004243 4.7e-138 496.1 776 38.8
Potri.014G120900 Populus trichocarpa HOM05D000361 ORTHO05D004243 1.4e-137 494.6 783 39.2
CSS0012467 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D004243 1.8e-137 494.2 750 39.6
Cfa005802 Carpinus fangiana HOM05D000361 ORTHO05D005006 1.8e-137 494.2 742 39.5
THA.LOC104801306 Tarenaya hassleriana HOM05D000361 ORTHO05D004243 2.3e-137 493.8 775 37.9
arahy.Tifrunner.gnm1.ann1.G7NAMC Arachis hypogaea HOM05D000361 ORTHO05D004243 4.0e-137 493.0 793 38.6
HanXRQChr15g0464131 Helianthus annuus HOM05D000361 ORTHO05D004243 1.2e-136 491.5 778 38.9
Gohir.A11G109900 Gossypium hirsutum HOM05D000361 ORTHO05D004243 2.6e-136 490.3 783 38.1
RcHm_v2.0_Chr7g0241471 Rosa chinensis HOM05D000361 ORTHO05D004243 2.6e-136 490.3 780 38.2
Gorai.007G122900 Gossypium raimondii HOM05D000361 ORTHO05D004243 4.4e-136 489.6 772 38.6
EL10As5g23529 Beta vulgaris HOM05D000361 ORTHO05D004243 7.5e-136 488.8 774 39.3
Phvul.007G214400 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 7.5e-136 488.8 760 39.2
VMungo0720G0598 Vigna mungo HOM05D000361 ORTHO05D004243 7.5e-136 488.8 756 39.2
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 3.7e-135 486.5 766 39.2
SGA_v2.0_scaffold36G14324 Striga asiatica HOM05D000361 ORTHO05D004243 8.3e-135 485.3 807 37.4
Dinv33114 Davidia involucrata HOM05D000361 ORTHO05D004243 1.1e-134 485.0 771 38.8
arahy.Tifrunner.gnm1.ann1.N0EKR1 Arachis hypogaea HOM05D000361 ORTHO05D004243 4.1e-134 483.0 805 37.9
CBR_g48220 Chara braunii HOM05D000361 ORTHO05D004243 4.1e-134 483.0 1022 34.4
Aa31LG5G1680 Aethionema arabicum HOM05D000361 ORTHO05D004243 2.0e-133 480.7 790 37.3
ECA236G0422 Erigeron canadensis HOM05D000361 ORTHO05D005006 3.5e-133 479.9 767 38.1
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 1.3e-132 478.0 719 39.5
Oeu008471.2 Olea europaea HOM05D000361 ORTHO05D004243 2.3e-132 477.2 820 37.3
DCAR_012354 Daucus carota HOM05D000361 ORTHO05D004243 9.5e-131 471.9 780 37.7
Nitab4.5_0001301g0010 Nicotiana tabacum HOM05D000361 ORTHO05D004243 1.4e-129 468.0 755 39.3
Hund09630 Selenicereus undatus HOM05D000361 ORTHO05D004243 3.0e-129 466.8 772 37.6
FAN18G4464 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.6e-128 463.8 762 37.5
BraA09t35809Z Brassica rapa HOM05D000361 ORTHO05D004243 7.5e-128 462.2 789 37.0
Lalb_Chr06g0166851 Lupinus albus HOM05D000361 ORTHO05D004243 3.7e-127 459.9 763 38.4
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.3e-127 458.8 779 37.5
BolC9t53093H Brassica oleracea HOM05D000361 ORTHO05D004243 3.5e-125 453.4 793 36.6
ClCG07G000710 Citrullus lanatus HOM05D000361 ORTHO05D004243 5.6e-123 446.0 776 37.4
Sabra14G0089600 Salix brachista HOM05D000361 ORTHO05D005006 7.3e-123 445.7 885 35.4
Lj1g0012423 Lotus japonicus HOM05D000361 ORTHO05D004243 2.0e-120 437.6 712 37.8
VMungo1383G3239 Vigna mungo HOM05D000361 ORTHO05D004243 4.1e-118 429.9 772 36.1
Ah.10g031040 Amaranthus hybridus HOM05D000361 ORTHO05D004243 7.0e-118 429.1 686 39.2
Aqoxy328s001 Aquilegia oxysepala HOM05D000361 ORTHO05D004243 1.3e-116 424.9 715 37.8
Psat3g020160 Pisum sativum HOM05D000361 ORTHO05D004243 2.3e-116 424.1 760 37.2
Manes.05G003200 Manihot esculenta HOM05D000361 ORTHO05D004243 3.0e-116 423.7 677 37.8
arahy.Tifrunner.gnm1.ann1.KULZ0F Arachis hypogaea HOM05D000361 ORTHO05D004243 8.0e-114 415.6 758 36.4
TPR.G4118 Trifolium pratense HOM05D000361 ORTHO05D004243 2.0e-112 411.0 776 35.2
Sabra02G0160700 Salix brachista HOM05D000361 ORTHO05D004243 2.4e-110 404.1 977 30.5
SalBow2G3626 Salvia bowleyana HOM05D000361 ORTHO05D004243 7.1e-110 402.5 797 35.6
arahy.Tifrunner.gnm1.ann1.66RZQ8 Arachis hypogaea HOM05D000361 ORTHO05D004243 6.0e-109 399.4 758 35.5
Sc05g0000420 Simmondsia chinensis HOM05D000361 ORTHO05D004243 1.3e-108 398.3 606 39.8
HPP92_004593 Vanilla planifolia HOM05D000361 ORTHO05D004243 7.3e-107 392.5 678 36.6
FAN04G1824 Fragaria x ananassa HOM05D000361 ORTHO05D004243 2.1e-106 391.0 772 35.4
Lsat_1_v5_gn_1_35460 Lactuca sativa HOM05D000361 ORTHO05D004243 2.0e-104 384.4 941 30.6
Cpa.g.sc18.42 Carica papaya HOM05D000361 ORTHO05D004243 1.1e-86 325.5 495 38.6
Atru.chr5.1003 Acer truncatum HOM05D000361 ORTHO05D004243 2.8e-82 310.8 483 38.1
Phvul.001G212700 Phaseolus vulgaris HOM05D000361 ORTHO05D004243 3.8e-79 300.4 569 35.3
Nitab4.5_0011075g0020 Nicotiana tabacum HOM05D000361 ORTHO05D004243 4.9e-79 300.1 593 33.2
TAR633G1939 Trochodendron aralioides HOM05D000361 ORTHO05D004243 2.5e-75 287.7 479 38.8
Dinv10097 Davidia involucrata HOM05D000361 ORTHO05D004243 6.2e-74 283.1 558 36.2
ClCG10G006350 Citrullus lanatus HOM05D000361 ORTHO05D004243 1.8e-73 281.6 560 34.3
Lj2A1205T44 Lonicera japonica HOM05D000361 ORTHO05D004243 4.9e-71 273.5 792 29.5
Gohir.D11G114600 Gossypium hirsutum HOM05D000361 ORTHO05D004243 3.5e-69 267.3 372 40.3
Oeu049914.1 Olea europaea HOM05D000361 ORTHO05D004243 5.1e-68 263.5 806 27.5
SEGI_20894 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 6.7e-68 263.1 330 47.3
MCO10G287 Micromonas commoda HOM05D000361 ORTHO05D004243 1.2e-61 242.3 827 26.1
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 1.0e-60 239.2 434 37.1
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 4.8e-58 230.3 945 26.0
PRCOL_00004542 Prasinoderma coloniale HOM05D000361 ORTHO05D004243 5.9e-56 223.4 797 25.5
CAN.G777.12 Capsicum annuum HOM05D000361 ORTHO05D004243 7.7e-56 223.0 359 39.8
unitig_736.g22938 Utricularia gibba HOM05D000361 ORTHO05D004243 1.0e-52 212.6 357 35.9
Lalb_Chr15g0078161 Lupinus albus HOM05D000361 ORTHO05D004243 9.7e-51 206.1 441 31.7
unitig_736.g22937 Utricularia gibba HOM05D000361 ORTHO05D004243 9.1e-49 199.5 378 36.8
Atru.chr5.1002 Acer truncatum HOM05D000361 ORTHO05D004243 1.1e-46 192.6 183 52.5
Oeu041216.1 Olea europaea HOM05D000361 ORTHO05D004243 2.7e-45 188.0 259 40.9
arahy.Tifrunner.gnm1.ann1.Z1FAFN Arachis hypogaea HOM05D000361 ORTHO05D004243 1.4e-44 185.7 252 42.5
DCAR_005759 Daucus carota HOM05D000361 ORTHO05D004243 2.6e-43 181.4 451 31.5
arahy.Tifrunner.gnm1.ann1.3FW809 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.8e-41 175.3 250 42.8
arahy.Tifrunner.gnm1.ann1.1JN5P4 Arachis hypogaea HOM05D000361 ORTHO05D004243 3.1e-41 174.5 145 57.9
DCAR_005760 Daucus carota HOM05D000361 ORTHO05D004243 2.9e-39 167.9 214 43.5
arahy.Tifrunner.gnm1.ann1.99VT9P Arachis hypogaea HOM05D000361 ORTHO05D004243 1.2e-37 162.5 205 44.9
Zm00001eb056500 Zea mays HOM05D000361 ORTHO05D004243 2.7e-37 161.4 290 35.9
Ca_09209_v3 Cicer arietinum L. HOM05D000361 ORTHO05D004243 6.1e-37 160.2 430 29.3
SEGI_09541 Sequoiadendron giganteum HOM05D000361 ORTHO05D004243 8.8e-36 156.4 167 47.9
Cc05_g04720 Coffea canephora HOM05D000361 ORTHO05D004243 7.0e-33 146.7 191 40.8
Cc02_g33820 Coffea canephora HOM05D000361 ORTHO05D004243 2.7e-32 144.8 196 39.8
Lalb_Chr15g0078171 Lupinus albus HOM05D000361 ORTHO05D004243 2.9e-31 141.4 162 48.1
Cc04_g08620 Coffea canephora HOM05D000361 ORTHO05D004243 1.5e-30 139.0 188 40.4
Cc02_g26000 Coffea canephora HOM05D000361 ORTHO05D004243 7.2e-30 136.7 188 39.9
Cc11_g04100 Coffea canephora HOM05D000361 ORTHO05D004243 2.7e-29 134.8 191 39.8
BcaC04g24029 Brassica carinata HOM05D000361 ORTHO05D004243 1.7e-26 125.6 222 34.2
Lalb_Chr15g0078151 Lupinus albus HOM05D000361 ORTHO05D004243 5.0e-23 114.0 120 50.8
Dinv10095 Davidia involucrata HOM05D000361 ORTHO05D004243 1.6e-21 109.0 104 54.8
CDE05G1119 Ceratophyllum demersum HOM05D001444 ORTHO05D003766 1.0e-20 106.3 177 37.3
Cc03_g12210 Coffea canephora HOM05D000361 ORTHO05D004243 1.2e-19 102.8 109 44.0
COL.COLO4_26725 Corchorus olitorius HOM05D000361 ORTHO05D004243 1.1e-17 96.3 244 27.5
Gorai.008G140000 Gossypium raimondii HOM05D000361 ORTHO05D004243 2.0e-16 92.0 90 50.0
Cc00_g34370 Coffea canephora HOM05D000361 ORTHO05D004243 5.0e-15 87.4 123 36.6
SHI15042 Sapria himalayana HOM05D000361 ORTHO05D004243 5.0e-15 87.4 145 38.6
Actinidia04687 Actinidia chinensis HOM05D000361 ORTHO05D004243 2.5e-14 85.1 219 28.8
Oeu049910.1 Olea europaea HOM05D000361 ORTHO05D004243 1.6e-13 82.4 147 35.4
Glyma.19G216151 Glycine max HOM05D000361 ORTHO05D004243 2.8e-13 81.6 122 44.3
Actinidia27762 Actinidia chinensis HOM05D000361 ORTHO05D004243 6.1e-13 80.5 207 29.0
Actinidia04728 Actinidia chinensis HOM05D000361 ORTHO05D004243 4.0e-12 77.8 219 27.4
CAN.G777.11 Capsicum annuum HOM05D000361 ORTHO05D004243 4.0e-12 77.8 169 30.8
Glyma.14G155300 Glycine max HOM05D000361 ORTHO05D004243 1.2e-11 76.3 84 44.0
MD11G1314200 Malus domestica HOM05D000361 ORTHO05D004243 3.7e-10 71.2 118 39.8
arahy.Tifrunner.gnm1.ann1.3YE891 Arachis hypogaea HOM05D000361 ORTHO05D004243 1.1e-09 69.7 65 49.2
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 1.4e-09 69.3 135 37.8
Lj2A1205T45 Lonicera japonica HOM05D000361 ORTHO05D004243 1.4e-09 69.3 45 73.3


User provided reference genes

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