Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 8.7e-196 686.8 352 100.0
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 7.9e-96 354.8 319 60.8
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 2.5e-94 349.7 318 58.2
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 4.3e-94 349.0 326 55.5
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 7.4e-94 348.2 328 55.8
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 7.4e-94 348.2 319 57.4
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 9.6e-94 347.8 329 56.2
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 2.8e-93 346.3 313 57.2
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 2.8e-93 346.3 318 56.0
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.8e-93 346.3 337 55.5
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.8e-93 346.3 340 55.3
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 3.7e-93 345.9 320 57.2
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 3.7e-93 345.9 324 55.9
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 4.8e-93 345.5 324 55.9
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 4.8e-93 345.5 318 56.9
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 4.8e-93 345.5 319 57.1
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 6.2e-93 345.1 321 56.4
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.1e-92 344.4 337 54.9
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.1e-92 344.4 337 54.9
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.4e-92 344.0 329 55.6
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 1.4e-92 344.0 347 55.0
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 2.4e-92 343.2 315 55.9
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 3.1e-92 342.8 324 55.9
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 4.0e-92 342.4 317 57.4
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 6.9e-92 341.7 325 55.4
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 6.9e-92 341.7 321 55.8
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 9.0e-92 341.3 323 55.7
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 9.0e-92 341.3 316 57.6
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 1.2e-91 340.9 316 57.9
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 1.2e-91 340.9 318 55.3
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 2.6e-91 339.7 316 55.1
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 2.6e-91 339.7 336 52.7
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 3.4e-91 339.3 349 53.0
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 3.4e-91 339.3 319 56.4
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 4.5e-91 339.0 318 56.6
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 4.5e-91 339.0 320 55.3
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 5.8e-91 338.6 326 56.4
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 5.8e-91 338.6 316 56.6
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 7.6e-91 338.2 318 56.0
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 7.6e-91 338.2 325 56.3
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 1.0e-90 337.8 328 57.3
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 1.3e-90 337.4 319 55.5
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 1.7e-90 337.0 317 56.8
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 1.7e-90 337.0 316 55.1
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 1.7e-90 337.0 316 57.3
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 1.7e-90 337.0 327 54.7
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 2.2e-90 336.7 316 54.7
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 3.8e-90 335.9 324 55.2
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 4.9e-90 335.5 340 54.4
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 4.9e-90 335.5 318 56.3
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 6.5e-90 335.1 332 53.6
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 6.5e-90 335.1 321 56.1
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 8.4e-90 334.7 315 56.2
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 8.4e-90 334.7 319 55.2
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 8.4e-90 334.7 318 55.3
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 8.4e-90 334.7 324 56.5
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 1.4e-89 334.0 325 54.5
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 1.4e-89 334.0 316 54.4
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 2.5e-89 333.2 318 55.7
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 2.5e-89 333.2 318 56.0
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 3.2e-89 332.8 315 55.6
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 3.2e-89 332.8 320 56.9
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 4.2e-89 332.4 316 54.1
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 7.1e-89 331.6 338 55.6
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 9.3e-89 331.3 317 55.2
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 2.1e-88 330.1 320 55.0
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 2.1e-88 330.1 332 53.9
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 4.6e-88 328.9 327 53.2
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 4.6e-88 328.9 316 53.8
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 4.6e-88 328.9 336 50.9
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 6.0e-88 328.6 307 56.0
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 1.3e-87 327.4 327 54.4
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 3.3e-86 322.8 330 53.9
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 4.3e-86 322.4 334 53.3
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 5.7e-86 322.0 309 55.7
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 2.1e-85 320.1 329 53.5
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 3.7e-85 319.3 334 53.3
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 8.2e-85 318.2 206 78.2
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 2.5e-81 306.6 273 58.2
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 9.3e-81 304.7 313 53.4
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 2.1e-80 303.5 348 47.4
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 2.7e-80 303.1 274 55.1
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 1.3e-79 300.8 320 53.1
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 5.1e-79 298.9 319 52.0
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 2.5e-78 296.6 318 51.6
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 5.7e-78 295.4 313 51.4
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 9.7e-78 294.7 319 51.1
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 4.5e-75 285.8 267 59.6
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 8.5e-74 281.6 317 49.8
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 1.4e-73 280.8 381 44.6
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 2.1e-72 276.9 271 55.4
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 2.3e-71 273.5 418 41.1
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 2.5e-70 270.0 318 50.0
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 4.1e-68 262.7 359 45.7
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 9.4e-65 251.5 355 43.9
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 4.7e-64 249.2 224 58.5
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 9.7e-62 241.5 332 42.5
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 5.3e-60 235.7 314 45.2
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 3.5e-59 233.0 315 44.1
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 2.0e-54 217.2 205 54.6
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 2.3e-39 167.2 119 62.2
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 2.8e-37 160.2 273 38.5
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 9.2e-36 155.2 183 50.8
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 7.5e-30 135.6 125 54.4
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 7.0e-28 129.0 158 44.3
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 5.6e-25 119.4 109 56.0
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 8.9e-23 112.1 225 34.7
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 1.6e-08 64.7 52 55.8
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 4.0e-07 60.1 85 47.1


User provided reference genes

Program Settings