Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 8.5e-93 343.6 165 100.0
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 2.2e-48 196.1 148 64.2
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 3.9e-45 185.3 174 55.2
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 6.6e-45 184.5 159 58.5
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 1.9e-44 183.0 133 66.2
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 2.9e-40 169.1 115 67.0
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 2.8e-35 152.5 119 58.0
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 2.8e-35 152.5 130 53.8
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 1.1e-34 150.6 117 58.1
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 1.1e-34 150.6 117 58.1
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 1.4e-34 150.2 130 53.1
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.4e-34 150.2 130 53.1
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.8e-34 149.8 130 53.8
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 2.4e-34 149.4 129 51.9
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 2.4e-34 149.4 117 59.0
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 5.2e-34 148.3 136 50.0
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 5.2e-34 148.3 136 50.0
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.2e-34 148.3 131 53.4
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 1.2e-33 147.1 117 59.8
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 1.5e-33 146.7 131 52.7
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 1.5e-33 146.7 121 53.7
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 1.5e-33 146.7 117 58.1
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.5e-33 146.7 131 52.7
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 2.0e-33 146.4 119 56.3
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 2.0e-33 146.4 115 59.1
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 2.0e-33 146.4 136 50.7
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 2.6e-33 146.0 119 55.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.6e-33 146.0 122 55.7
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 3.4e-33 145.6 131 51.1
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 4.4e-33 145.2 121 52.1
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 5.8e-33 144.8 121 52.9
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 5.8e-33 144.8 115 56.5
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 1.3e-32 143.7 119 53.8
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 1.3e-32 143.7 131 50.4
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 2.2e-32 142.9 128 53.9
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 2.2e-32 142.9 118 55.9
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 3.8e-32 142.1 117 53.8
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 3.8e-32 142.1 128 52.3
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 3.8e-32 142.1 119 55.5
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 3.8e-32 142.1 127 52.0
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 3.8e-32 142.1 123 51.2
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 4.9e-32 141.7 131 49.6
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.9e-32 141.7 119 52.1
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.9e-32 141.7 119 52.1
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 4.9e-32 141.7 118 58.5
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 6.4e-32 141.4 120 54.2
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 6.4e-32 141.4 121 50.4
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 6.4e-32 141.4 120 53.3
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 6.4e-32 141.4 124 55.6
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 8.4e-32 141.0 119 54.6
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 1.1e-31 140.6 130 49.2
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 1.1e-31 140.6 117 53.8
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 1.1e-31 140.6 117 53.8
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 1.1e-31 140.6 118 57.6
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 1.4e-31 140.2 117 59.8
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.4e-31 140.2 119 52.9
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.4e-31 140.2 131 49.6
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 1.4e-31 140.2 120 55.8
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 1.9e-31 139.8 118 55.9
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 1.9e-31 139.8 118 55.9
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 1.9e-31 139.8 118 55.9
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 1.9e-31 139.8 119 53.8
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.9e-31 139.8 119 53.8
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.9e-31 139.8 119 53.8
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 1.9e-31 139.8 121 52.9
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 2.4e-31 139.4 119 53.8
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 2.4e-31 139.4 132 49.2
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 3.2e-31 139.0 119 52.1
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 3.2e-31 139.0 117 54.7
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 3.2e-31 139.0 118 55.1
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 4.2e-31 138.7 117 55.6
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 5.4e-31 138.3 117 55.6
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 5.4e-31 138.3 123 54.5
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 9.3e-31 137.5 132 47.7
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 1.2e-30 137.1 117 53.8
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 1.6e-30 136.7 120 52.5
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.6e-30 136.7 110 56.4
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 1.6e-30 136.7 133 48.1
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 2.1e-30 136.3 117 53.8
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 2.7e-30 136.0 118 51.7
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 2.7e-30 136.0 116 52.6
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 2.7e-30 136.0 117 55.6
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 2.7e-30 136.0 133 48.1
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 2.7e-30 136.0 129 46.5
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 7.8e-30 134.4 115 52.2
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 1.0e-29 134.0 115 56.5
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 1.0e-29 134.0 110 55.5
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 1.0e-29 134.0 117 53.0
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 1.3e-29 133.7 113 54.9
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 1.7e-29 133.3 118 51.7
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 2.3e-29 132.9 120 52.5
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 3.0e-29 132.5 115 53.9
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 5.1e-29 131.7 120 51.7
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 5.1e-29 131.7 122 51.6
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 6.6e-29 131.3 122 51.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 6.6e-29 131.3 122 51.6
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 6.6e-29 131.3 122 50.8
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 8.7e-29 131.0 121 52.1
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 8.7e-29 131.0 139 48.9
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 1.9e-28 129.8 118 53.4
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 1.9e-28 129.8 130 46.2
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 2.5e-28 129.4 116 52.6
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 4.3e-28 128.6 119 49.6
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 4.3e-28 128.6 129 50.4
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 5.6e-28 128.3 123 48.8
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 9.6e-28 127.5 110 56.4
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 9.6e-28 127.5 119 51.3
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 9.6e-28 127.5 112 52.7
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 1.6e-27 126.7 116 50.9
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.1e-27 126.3 101 58.4
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 4.8e-27 125.2 122 50.0
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 8.1e-27 124.4 120 50.8
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 1.8e-26 123.2 136 45.6
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 5.3e-26 121.7 130 46.9
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 5.3e-26 121.7 113 48.7
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.2e-25 120.6 117 50.4
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 1.2e-25 120.6 78 62.8
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 4.5e-25 118.6 85 62.4
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 1.7e-24 116.7 80 63.8
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 1.9e-23 113.2 116 49.1
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 2.4e-23 112.8 94 53.2
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 3.2e-23 112.5 117 45.3
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.6e-22 110.2 119 42.9
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 4.6e-22 108.6 91 54.9
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 6.7e-21 104.8 89 55.1
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 6.7e-21 104.8 98 50.0
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 5.8e-17 91.7 85 48.2
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 1.7e-16 90.1 67 59.7
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 2.8e-11 72.8 49 59.2
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 3.7e-11 72.4 75 41.3
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 1.9e-07 60.1 51 54.9


User provided reference genes

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