Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 8.0e-129 463.8 235 100.0
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 1.1e-42 177.6 128 65.6
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 7.2e-37 158.3 130 59.2
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 3.0e-35 152.9 130 55.4
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 1.1e-32 144.4 132 53.0
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 1.4e-32 144.1 140 51.4
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 1.8e-32 143.7 127 56.7
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 3.1e-32 142.9 115 59.1
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 4.1e-32 142.5 133 51.1
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 5.4e-32 142.1 133 52.6
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 7.0e-32 141.7 141 51.8
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 9.1e-32 141.4 140 50.7
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 1.2e-31 141.0 128 52.3
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 1.2e-31 141.0 115 57.4
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 1.2e-31 141.0 115 57.4
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 1.2e-31 141.0 115 57.4
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 1.2e-31 141.0 128 57.8
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.6e-31 140.6 133 53.4
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 1.6e-31 140.6 133 55.6
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 2.0e-31 140.2 133 53.4
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 2.0e-31 140.2 115 55.7
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 2.0e-31 140.2 112 62.5
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 2.0e-31 140.2 114 57.0
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 2.7e-31 139.8 132 54.5
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 2.7e-31 139.8 112 57.1
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 3.5e-31 139.4 148 48.6
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 5.9e-31 138.7 129 51.2
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 7.7e-31 138.3 127 53.5
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 1.0e-30 137.9 128 51.6
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.0e-30 137.9 128 54.7
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 1.0e-30 137.9 128 54.7
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 1.3e-30 137.5 113 54.9
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 1.3e-30 137.5 128 54.7
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 1.3e-30 137.5 139 50.4
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.3e-30 137.5 132 53.0
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.7e-30 137.1 112 59.8
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 1.7e-30 137.1 132 50.8
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 1.7e-30 137.1 115 58.3
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 1.7e-30 137.1 115 59.1
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 1.7e-30 137.1 120 55.0
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 1.7e-30 137.1 110 60.0
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 1.7e-30 137.1 112 58.9
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 2.2e-30 136.7 113 59.3
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 2.2e-30 136.7 125 53.6
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 2.2e-30 136.7 139 48.9
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 3.8e-30 136.0 129 50.4
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 3.8e-30 136.0 125 53.6
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 3.8e-30 136.0 139 48.2
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 5.0e-30 135.6 113 54.9
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 5.0e-30 135.6 107 58.9
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 5.0e-30 135.6 125 53.6
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 6.5e-30 135.2 130 53.8
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 6.5e-30 135.2 112 57.1
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 6.5e-30 135.2 130 53.1
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 8.5e-30 134.8 120 54.2
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 8.5e-30 134.8 125 52.8
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 8.5e-30 134.8 113 55.8
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 8.5e-30 134.8 112 57.1
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 1.1e-29 134.4 146 46.6
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 1.5e-29 134.0 146 47.3
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 1.9e-29 133.7 131 52.7
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 1.9e-29 133.7 111 54.1
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.9e-29 133.7 139 48.9
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 1.9e-29 133.7 112 58.0
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 1.9e-29 133.7 107 60.7
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 2.5e-29 133.3 110 59.1
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 2.5e-29 133.3 110 56.4
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 2.5e-29 133.3 158 44.9
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 3.2e-29 132.9 114 57.9
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 4.2e-29 132.5 138 48.6
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 4.2e-29 132.5 150 46.0
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 4.2e-29 132.5 113 55.8
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 4.2e-29 132.5 142 45.8
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 5.5e-29 132.1 131 50.4
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 5.5e-29 132.1 98 64.3
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 7.2e-29 131.7 148 45.3
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 7.2e-29 131.7 131 51.9
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 7.2e-29 131.7 131 51.9
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 7.2e-29 131.7 113 56.6
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 9.5e-29 131.3 131 51.1
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 9.5e-29 131.3 121 52.9
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 1.2e-28 131.0 107 59.8
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 1.6e-28 130.6 112 55.4
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.6e-28 130.6 143 49.7
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 1.6e-28 130.6 139 48.9
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 2.1e-28 130.2 129 53.5
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 2.7e-28 129.8 112 57.1
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 3.6e-28 129.4 145 49.0
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 3.6e-28 129.4 145 49.0
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 3.6e-28 129.4 113 55.8
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 4.7e-28 129.0 112 56.2
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 4.7e-28 129.0 112 56.2
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 4.7e-28 129.0 133 50.4
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 4.7e-28 129.0 113 56.6
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 6.1e-28 128.6 128 50.0
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 8.0e-28 128.3 112 56.2
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 8.0e-28 128.3 128 50.0
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 1.0e-27 127.9 149 47.0
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 1.0e-27 127.9 131 48.9
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 1.4e-27 127.5 112 55.4
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 2.3e-27 126.7 112 55.4
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 2.3e-27 126.7 126 50.0
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 2.3e-27 126.7 143 48.3
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 2.3e-27 126.7 143 48.3
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 2.3e-27 126.7 113 54.9
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 3.0e-27 126.3 131 48.9
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 3.0e-27 126.3 131 48.9
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 3.0e-27 126.3 137 48.2
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 3.0e-27 126.3 110 55.5
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 3.0e-27 126.3 113 54.9
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 3.0e-27 126.3 113 54.9
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 4.0e-27 125.9 112 56.2
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 1.2e-26 124.4 94 63.8
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 1.5e-26 124.0 156 43.6
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 1.5e-26 124.0 130 47.7
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 2.0e-26 123.6 104 60.6
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 2.6e-26 123.2 125 51.2
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 2.6e-26 123.2 121 53.7
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 3.4e-26 122.9 91 63.7
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 4.4e-26 122.5 145 48.3
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 5.7e-26 122.1 101 62.4
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 1.7e-25 120.6 148 48.6
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 1.7e-25 120.6 108 54.6
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 3.7e-25 119.4 117 49.6
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 3.7e-25 119.4 121 48.8
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 4.9e-25 119.0 110 51.8
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 4.9e-25 119.0 108 53.7
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 8.3e-25 118.2 107 55.1
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 4.1e-24 115.9 113 53.1
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 1.2e-23 114.4 87 62.1
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 1.2e-23 114.4 92 58.7
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 2.0e-23 113.6 99 54.5
Cre07.g349600 Chlamydomonas reinhardtii HOM05D005004 ORTHO05D006097 7.7e-23 111.7 144 41.7
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 2.9e-22 109.8 77 66.2
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 1.1e-21 107.8 72 69.4
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.9e-21 107.1 89 58.4
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 3.3e-21 106.3 81 64.2
PRCOL_00000026 Prasinoderma coloniale HOM05D005004 ORTHO05D006097 3.3e-21 106.3 139 41.7
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.2e-20 104.4 107 47.7
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 3.6e-20 102.8 92 54.3
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 8.9e-19 98.2 64 68.8
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 8.9e-19 98.2 69 63.8
Pp3s30_920 Physcomitrium patens HOM05D002293 ORTHO05D006850 3.2e-16 89.7 108 41.7
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 2.7e-15 86.7 76 57.9
Haze_27657 Corylus avellana HOM05D005004 ORTHO05D006097 3.0e-14 83.2 122 37.7
Aqoxy6G00443 Aquilegia oxysepala HOM05D002293 ORTHO05D006850 1.9e-13 80.5 129 34.9
MELO3C007469.2 Cucumis melo HOM05D002293 ORTHO05D006850 2.5e-13 80.1 122 36.9
CDE06G1065 Ceratophyllum demersum HOM05D002293 ORTHO05D006850 3.3e-13 79.7 121 36.4
ECA246G2776 Erigeron canadensis HOM05D002293 ORTHO05D006850 4.3e-13 79.3 129 36.4
SEGI_15698 Sequoiadendron giganteum HOM05D002293 ORTHO05D006850 5.6e-13 79.0 127 39.4
PSO675G5492 Papaver somniferum HOM05D002293 ORTHO05D006850 7.3e-13 78.6 132 37.1
TPR.G2175 Trifolium pratense HOM05D002293 ORTHO05D006850 7.3e-13 78.6 133 34.6
Ca_17690_v3 Cicer arietinum L. HOM05D002293 ORTHO05D006850 1.6e-12 77.4 123 37.4
CsaV3_6G042270 Cucumis sativus L. HOM05D002293 ORTHO05D006850 1.6e-12 77.4 123 37.4
Psat7g050640 Pisum sativum HOM05D002293 ORTHO05D006850 2.1e-12 77.0 133 35.3
Medtr8g092030 Medicago truncatula HOM05D002293 ORTHO05D006850 2.8e-12 76.6 130 35.4
Pp3c2_12660 Physcomitrium patens HOM05D002293 ORTHO05D006850 2.8e-12 76.6 127 37.8
Cc07_g16420 Coffea canephora HOM05D002293 ORTHO05D006850 8.0e-12 75.1 148 31.8
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 8.0e-12 75.1 60 56.7
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 1.0e-11 74.7 105 42.9
PSO541G6313 Papaver somniferum HOM05D002293 ORTHO05D006850 1.0e-11 74.7 132 35.6
Peaxi162Scf00167g00513 Petunia axillaris HOM05D002293 ORTHO05D006850 1.4e-11 74.3 116 36.2
CBR_g72684 Chara braunii HOM05D002293 ORTHO05D006850 3.1e-11 73.2 125 36.0
Mapoly0063s0067 Marchantia polymorpha HOM05D002293 ORTHO05D006850 3.1e-11 73.2 140 34.3
Pp3c1_29460 Physcomitrium patens HOM05D002293 ORTHO05D006850 5.2e-11 72.4 115 36.5
SMO144G0175 Selaginella moellendorffii HOM05D002293 ORTHO05D006850 1.2e-10 71.2 131 32.8
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.0e-10 70.5 107 36.4
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 2.6e-10 70.1 55 58.2
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 3.4e-10 69.7 107 34.6
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 3.4e-10 69.7 107 34.6
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 5.8e-10 68.9 131 33.6
Pp3c14_20400 Physcomitrium patens HOM05D002293 ORTHO05D006850 7.5e-10 68.6 100 40.0
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 9.8e-10 68.2 107 33.6
MSTRG.5844 Avicennia marina HOM05D005004 ORTHO05D006097 1.7e-09 67.4 56 53.6
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 2.2e-09 67.0 107 33.6
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 2.9e-09 66.6 127 34.6
Haze_26850 Corylus avellana HOM05D003456 ORTHO05D004082 3.2e-08 63.2 106 36.8
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.6e-07 60.8 116 32.8
Hma1.2p1_0160F.1_g071250 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 2.3e-06 57.0 62 48.4


User provided reference genes

Program Settings