Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 0.0e+00 5206.0 2639 100.0
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 0.0e+00 1169.8 2327 35.1
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 0.0e+00 1105.1 2766 30.9
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1102.4 2696 30.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 0.0e+00 1094.3 2698 30.8
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 0.0e+00 1082.8 2762 30.1
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 0.0e+00 1080.5 2754 30.6
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 0.0e+00 1078.2 2783 30.9
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 4.7e-310 1069.3 2751 30.2
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 3.0e-309 1066.6 2762 30.2
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 1.2e-308 1064.7 2767 30.2
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 3.4e-308 1063.1 2760 30.1
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 4.4e-308 1062.8 2770 30.4
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 4.4e-308 1062.8 2801 30.3
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 6.3e-307 1058.9 2806 30.3
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 3.1e-306 1056.6 2753 30.2
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 9.2e-306 1055.0 2785 29.9
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 2.0e-305 1053.9 2741 30.6
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 3.5e-305 1053.1 2823 29.2
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 5.9e-305 1052.4 2794 30.6
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 3.8e-304 1049.7 2791 30.2
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 1.9e-303 1047.3 2750 29.9
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.6e-302 1044.3 2796 30.0
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-302 1044.3 2801 30.0
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 3.6e-302 1043.1 2778 29.7
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 3.0e-301 1040.0 2781 30.0
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 4.0e-301 1039.6 2770 30.1
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 5.2e-301 1039.3 2775 30.1
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 8.9e-301 1038.5 2797 30.0
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.2e-300 1038.1 2797 30.0
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 5.7e-300 1035.8 2736 29.8
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.7e-300 1035.8 2792 29.7
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 1.7e-299 1034.2 2798 29.2
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 2.2e-299 1033.9 2725 30.0
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 4.9e-299 1032.7 2732 30.9
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.8e-297 1025.4 2825 29.6
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 1.7e-296 1024.2 2752 28.9
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 1.1e-295 1021.5 2778 29.3
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.3e-295 1020.0 2764 29.9
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 2.1e-294 1017.3 2757 29.0
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 2.1e-294 1017.3 2723 30.1
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.3e-293 1013.8 2746 29.4
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.2e-292 1011.5 2732 29.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 1.3e-291 1008.1 2623 30.1
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 2.9e-291 1006.9 2720 29.5
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 2.9e-291 1006.9 2739 29.9
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 4.1e-290 1003.0 2703 29.7
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 2.0e-289 1000.7 2743 30.3
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 6.0e-289 999.2 2707 29.7
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 1.0e-288 998.4 2745 29.4
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 1.5e-287 994.6 2706 28.9
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 1.5e-287 994.6 2744 28.9
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 7.3e-287 992.3 2783 29.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 1.2e-286 991.5 2788 28.9
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 2.8e-286 990.3 2758 29.8
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 1.1e-285 988.4 2716 29.8
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 1.8e-285 987.6 2708 29.7
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 2.3e-285 987.3 2741 29.4
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 3.4e-284 983.4 2767 28.7
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 8.3e-283 978.8 2843 28.1
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 3.2e-282 976.9 2738 29.1
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 1.6e-281 974.5 2759 29.2
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 2.1e-281 974.2 2740 29.2
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 7.8e-281 972.2 1787 36.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 1.7e-280 971.1 2768 28.9
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 2.3e-280 970.7 2764 29.7
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 6.6e-280 969.1 2760 29.2
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 1.1e-279 968.4 2745 29.1
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 1.6e-278 964.5 2742 29.4
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 5.2e-277 959.5 2768 28.9
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 5.4e-274 949.5 2738 28.2
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 1.0e-272 945.3 2770 28.9
ClCG05G000720 Citrullus lanatus HOM05D004435 ORTHO05D005103 1.1e-271 941.8 2755 28.7
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 1.9e-271 941.0 2717 29.3
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 6.9e-269 932.6 2593 29.0
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 1.2e-268 931.8 2812 28.9
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 2.1e-265 921.0 2535 29.7
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 6.9e-253 879.4 2677 27.9
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 3.3e-247 860.5 2714 27.5
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 4.2e-242 843.6 2760 27.1
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 5.5e-234 816.6 2755 27.8
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 6.3e-230 803.1 2014 31.5
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 2.6e-228 797.7 3572 25.9
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 7.4e-223 779.6 2708 27.5
CDE10G1324 Ceratophyllum demersum HOM05D004435 ORTHO05D005103 1.2e-220 772.3 2738 26.6
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 1.5e-215 755.4 1971 30.6
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 3.1e-205 721.1 1968 29.0
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 9.8e-199 699.5 1521 32.8
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 7.0e-197 693.3 1684 31.9
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 1.6e-196 692.2 1527 32.2
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.3e-171 609.4 1470 31.2
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 6.6e-171 607.1 2001 27.0
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.1e-168 598.2 1937 28.0
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-157 562.8 1444 28.8
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 2.5e-146 525.4 1417 28.9
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 2.8e-145 521.9 1452 29.4
Lj7C498G9 Lonicera japonica HOM05D004435 ORTHO05D005103 3.2e-133 481.9 1498 27.3
MBI06_g46370_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.7e-124 452.2 492 47.8
ATR0605G027 Amborella trichopoda HOM05D004435 ORTHO05D005103 1.3e-123 449.9 505 46.9
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.8e-120 439.5 1182 30.0
TAR374G0936 Trochodendron aralioides HOM05D004435 ORTHO05D005103 1.2e-119 436.8 1191 29.6
SMO203G0146 Selaginella moellendorffii HOM05D004435 ORTHO05D005103 1.3e-118 433.3 452 50.9
Nitab4.5_0007244g0020 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.4e-117 429.9 493 45.6
Lj7A498G38 Lonicera japonica HOM05D004435 ORTHO05D005103 1.9e-117 429.5 1183 28.7
Os01g0551900 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 5.5e-117 427.9 537 44.1
DCAR_008666 Daucus carota HOM05D004435 ORTHO05D005103 1.1e-114 420.2 472 46.0
DCAR_008667 Daucus carota HOM05D004435 ORTHO05D005103 1.1e-114 420.2 472 46.0
SEGI_19519 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 3.4e-111 408.7 964 30.9
HPP92_020188 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.5e-93 348.2 1252 26.9
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.6e-84 320.1 607 33.8
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 1.8e-83 316.6 520 37.1
CARHR141910 Cardamine hirsuta HOM05D004435 ORTHO05D005103 8.8e-83 314.3 979 28.3
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 2.0e-79 303.1 469 38.0
Hma1.2p1_0101F.1_g049290 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 7.7e-79 301.2 382 43.5
DCAR_008669 Daucus carota HOM05D004435 ORTHO05D005103 2.8e-76 292.7 1253 23.8
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 2.3e-67 263.1 297 46.8
TPR.G20227 Trifolium pratense HOM05D004435 ORTHO05D005103 3.7e-57 229.2 453 32.2
Cpa.g.sc96.43 Carica papaya HOM05D004435 ORTHO05D005103 1.1e-56 227.6 227 51.1
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 4.6e-55 222.2 239 48.1
Hma1.2p1_0101F.1_g049270 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.2e-49 203.4 648 27.6
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.4e-48 200.7 408 32.6
Aa31LG1G27950 Aethionema arabicum HOM05D004435 ORTHO05D005103 1.1e-45 191.0 680 26.8
FAN01G0536 Fragaria x ananassa HOM05D004435 ORTHO05D005103 5.6e-45 188.7 194 46.4
PGSC0003DMG400000235 Solanum tuberosum HOM05D004435 ORTHO05D005103 7.3e-45 188.3 174 51.7
AagrBONN_evm.TU.Sc2ySwM_228.2860 Anthoceros agrestis HOM05D004435 ORTHO05D005103 1.2e-44 187.6 278 39.9
SEGI_02021 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 5.6e-37 162.2 136 56.6
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 2.4e-35 156.8 588 28.9
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 1.4e-32 147.5 300 32.0
Atru.chr5.691 Acer truncatum HOM05D004435 ORTHO05D005103 3.5e-31 142.9 120 52.5
MapolyY_B0006 Marchantia polymorpha HOM05D004435 ORTHO05D005103 9.6e-29 134.8 211 37.9
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 4.0e-27 129.4 314 30.9
Aa31LG1G27960 Aethionema arabicum HOM05D004435 ORTHO05D005103 7.9e-23 115.2 199 35.7
BcaC02g12668 Brassica carinata HOM05D004435 ORTHO05D005103 8.7e-22 111.7 193 35.8
HanXRQChr10g0310771 Helianthus annuus HOM05D004435 ORTHO05D005103 1.5e-21 110.9 115 47.0
Peaxi162Scf00345g00113 Petunia axillaris HOM05D002646 ORTHO05D002782 7.4e-21 108.6 207 31.4
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.3e-20 107.8 88 60.2
Ca_26677_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 2.4e-19 103.6 74 62.2
Actinidia20096 Actinidia chinensis HOM05D004435 ORTHO05D005103 5.3e-19 102.4 268 29.5
Os01g0552000 Oryza sativa ssp. japonica HOM05D004435 ORTHO05D005103 4.9e-17 95.9 297 25.3
HanXRQChr03g0082981 Helianthus annuus HOM05D004435 ORTHO05D005103 1.4e-11 77.8 116 38.8
Cpa.g.sc96.46 Carica papaya HOM05D004435 ORTHO05D005103 1.8e-11 77.4 182 29.7
SEGI_36456 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 4.1e-11 76.3 128 35.2
Actinidia20091 Actinidia chinensis HOM05D004435 ORTHO05D005103 1.2e-10 74.7 105 37.1
Hma1.2p1_0101F.1_g049260 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 9.3e-08 65.1 96 43.8
FAN10G3206 Fragaria x ananassa HOM05D004435 ORTHO05D005103 7.9e-07 62.0 112 36.6


User provided reference genes

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