Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.4e-56 220.7 107 100.0
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.7e-46 189.1 101 88.1
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 2.3e-46 188.7 105 85.7
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 6.6e-38 160.6 103 67.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 5.8e-34 147.5 93 69.9
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 4.9e-33 144.4 105 64.8
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 6.4e-33 144.1 105 63.8
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 8.4e-33 143.7 105 61.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.1e-32 143.3 98 65.3
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.9e-32 142.5 94 67.0
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 3.2e-32 141.7 107 62.6
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 7.1e-32 140.6 103 64.1
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 7.1e-32 140.6 103 62.1
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 9.3e-32 140.2 102 63.7
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 9.3e-32 140.2 103 63.1
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.6e-31 139.4 103 66.0
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 1.6e-31 139.4 94 64.9
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 1.6e-31 139.4 103 64.1
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.7e-31 138.7 105 61.0
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 2.7e-31 138.7 103 62.1
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.7e-31 138.7 94 66.0
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.5e-31 138.3 94 64.9
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 3.5e-31 138.3 104 63.5
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 3.5e-31 138.3 105 63.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.6e-31 137.9 103 62.1
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 4.6e-31 137.9 94 63.8
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 4.6e-31 137.9 103 62.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 4.6e-31 137.9 94 63.8
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.6e-31 137.9 94 63.8
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 4.6e-31 137.9 107 58.9
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 4.6e-31 137.9 94 64.9
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 6.0e-31 137.5 103 64.1
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 6.0e-31 137.5 105 61.9
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 6.0e-31 137.5 103 63.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 6.0e-31 137.5 103 63.1
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 6.0e-31 137.5 103 62.1
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 7.8e-31 137.1 103 63.1
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 7.8e-31 137.1 105 61.9
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.8e-31 137.1 94 64.9
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.0e-30 136.7 94 64.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-30 136.3 103 62.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.3e-30 136.3 103 63.1
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.3e-30 136.3 105 61.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.3e-30 136.3 105 61.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.7e-30 136.0 103 61.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 2.3e-30 135.6 105 60.0
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 2.3e-30 135.6 102 60.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 2.3e-30 135.6 94 62.8
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 3.9e-30 134.8 105 61.0
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.1e-30 134.4 94 63.8
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.1e-30 134.4 95 63.2
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 5.1e-30 134.4 95 63.2
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 5.1e-30 134.4 103 63.1
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 5.1e-30 134.4 103 63.1
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.1e-30 134.4 94 63.8
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 5.1e-30 134.4 105 60.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 5.1e-30 134.4 105 60.0
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 6.6e-30 134.0 94 63.8
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 6.6e-30 134.0 94 63.8
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.6e-30 134.0 103 60.2
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 6.6e-30 134.0 103 61.2
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 8.7e-30 133.7 94 63.8
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 8.7e-30 133.7 94 63.8
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 8.7e-30 133.7 94 63.8
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 8.7e-30 133.7 105 60.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 8.7e-30 133.7 105 59.0
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 8.7e-30 133.7 105 59.0
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 8.7e-30 133.7 101 61.4
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 103 59.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 1.1e-29 133.3 103 63.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 1.1e-29 133.3 105 59.0
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.1e-29 133.3 94 63.8
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 1.5e-29 132.9 94 63.8
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 1.5e-29 132.9 94 63.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.5e-29 132.9 103 60.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.5e-29 132.9 103 59.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.5e-29 132.9 113 57.5
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-29 132.5 102 60.8
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.9e-29 132.5 102 60.8
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.5e-29 132.1 102 60.8
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.5e-29 132.1 94 62.8
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 3.3e-29 131.7 94 62.8
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 3.3e-29 131.7 94 63.8
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 3.3e-29 131.7 94 61.7
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 3.3e-29 131.7 103 61.2
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 3.3e-29 131.7 103 61.2
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 4.3e-29 131.3 103 60.2
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 5.6e-29 131.0 94 62.8
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 5.6e-29 131.0 107 57.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 7.3e-29 130.6 103 59.2
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.3e-29 130.6 103 59.2
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 9.6e-29 130.2 93 60.2
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 9.6e-29 130.2 94 61.7
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 9.6e-29 130.2 94 60.6
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.6e-28 129.4 94 62.8
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.6e-28 129.4 92 64.1
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.6e-28 129.4 92 64.1
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 2.8e-28 128.6 106 58.5
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.8e-28 128.6 86 64.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 3.6e-28 128.3 103 56.3
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 3.6e-28 128.3 105 55.2
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.6e-28 128.3 102 59.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 3.6e-28 128.3 103 59.2
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 3.6e-28 128.3 103 58.3
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 4.8e-28 127.9 103 59.2
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 6.2e-28 127.5 102 58.8
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 6.2e-28 127.5 103 58.3
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 6.2e-28 127.5 102 57.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 6.2e-28 127.5 102 57.8
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 8.1e-28 127.1 102 58.8
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 8.1e-28 127.1 103 58.3
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 8.1e-28 127.1 102 57.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.1e-27 126.7 94 59.6
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.1e-27 126.7 94 59.6
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 1.8e-27 125.9 102 58.8
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.8e-27 125.9 103 58.3
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.8e-27 125.9 103 58.3
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.8e-27 125.9 103 58.3
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 1.8e-27 125.9 86 62.8
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 2.4e-27 125.6 102 57.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.4e-27 125.6 102 57.8
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 2.4e-27 125.6 106 56.6
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 4.0e-27 124.8 102 57.8
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.0e-27 124.8 103 57.3
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 4.0e-27 124.8 103 57.3
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 9.0e-27 123.6 94 57.4
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 9.0e-27 123.6 94 58.5
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 9.0e-27 123.6 101 54.5
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 9.0e-27 123.6 94 58.5
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 9.0e-27 123.6 103 57.3
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.2e-26 123.2 103 56.3
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 1.5e-26 122.9 103 56.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.5e-26 122.9 103 55.3
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.5e-26 122.9 103 55.3
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.5e-26 122.9 101 55.4
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 2.0e-26 122.5 103 56.3
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.6e-26 122.1 103 55.3
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 3.4e-26 121.7 96 53.1
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 4.5e-26 121.3 94 56.4
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 9.9e-26 120.2 103 54.4
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.9e-25 118.6 103 54.4
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 9.3e-24 113.6 165 39.4
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 1.0e-22 110.2 96 53.1
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 8.7e-22 107.1 73 61.6
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 1.5e-21 106.3 86 60.5
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 3.3e-21 105.1 81 61.7
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 3.3e-21 105.1 97 47.4
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 6.2e-20 100.9 89 51.7
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.8e-18 94.4 77 57.1
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 1.7e-17 92.8 90 44.4
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 4.2e-16 88.2 66 68.2
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 7.9e-15 84.0 62 69.4
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.3e-14 83.2 70 55.7
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 3.9e-14 81.6 74 55.4
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 3.9e-14 81.6 60 71.7
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 5.6e-13 77.8 61 65.6
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 9.6e-13 77.0 62 59.7
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 1.3e-12 76.6 62 62.9
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 2.1e-12 75.9 62 61.3
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 2.8e-12 75.5 67 58.2
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 5.3e-11 71.2 56 62.5
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 2.6e-10 68.9 53 64.2
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 4.5e-10 68.2 58 53.4
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 2.2e-09 65.9 55 58.2
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.8e-09 65.1 54 51.9
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.9e-08 62.8 52 48.1
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 6.0e-07 57.8 41 53.7


User provided reference genes

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